Wall clock time and date at job start Fri Apr 10 2020 14:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47527 * 270.00311 * 3 2 1 5 5 H 1.48508 * 109.46996 * 30.00357 * 3 2 1 6 6 H 1.48505 * 109.47048 * 149.99856 * 3 2 1 7 7 C 1.40036 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00030 * 163.18657 * 7 2 1 9 9 C 1.40844 * 119.99774 * 343.19087 * 7 2 1 10 10 C 1.40767 * 120.33455 * 333.64026 * 9 7 2 11 11 C 1.36399 * 119.98917 * 180.30041 * 10 9 7 12 12 C 1.38967 * 120.70347 * 359.69850 * 11 10 9 13 13 C 1.38020 * 120.68063 * 0.02562 * 12 11 10 14 14 C 1.39247 * 119.98286 * 0.02562 * 13 12 11 15 15 C 1.47758 * 120.34739 * 179.97438 * 14 13 12 16 16 C 1.39746 * 120.12726 * 129.97685 * 15 14 13 17 17 C 1.37821 * 120.14060 * 180.08195 * 16 15 14 18 18 C 1.38940 * 120.25583 * 0.05742 * 17 16 15 19 19 C 1.39531 * 119.78433 * 359.78044 * 18 17 16 20 20 C 1.38210 * 120.30369 * 0.27340 * 19 18 17 21 21 N 1.40397 * 119.72513 * 180.54305 * 19 18 17 22 22 C 1.47318 * 117.68069 * 345.90979 * 21 19 18 23 23 C 1.53526 * 107.55744 * 42.15162 * 22 21 19 24 24 O 1.35892 * 119.50611 * 179.58425 * 18 17 16 25 25 H 0.97002 * 120.00327 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00312 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.64792 * 179.71922 * 11 10 9 28 28 H 1.07993 * 119.66071 * 180.02562 * 12 11 10 29 29 H 1.08005 * 120.01233 * 179.97438 * 13 12 11 30 30 H 1.08003 * 119.93147 * 0.10739 * 16 15 14 31 31 H 1.08002 * 119.86950 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.11309 * 179.82155 * 20 19 18 33 33 H 0.96997 * 121.14128 * 165.95574 * 21 19 18 34 34 H 1.09001 * 109.90026 * 282.61282 * 22 21 19 35 35 H 1.09002 * 109.85980 * 161.66685 * 22 21 19 36 36 H 1.09002 * 109.58113 * 181.92853 * 23 22 21 37 37 H 1.08996 * 109.58269 * 61.52824 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4894 2.0466 -1.4000 5 1 1.4393 2.6527 0.7002 6 1 3.5395 1.4402 0.7001 7 6 2.0082 -1.2127 -0.0005 8 1 3.0535 -1.2325 -0.2711 9 6 1.3491 -2.4066 0.3517 10 6 0.2289 -2.3756 1.2035 11 6 -0.4003 -3.5366 1.5450 12 6 0.0483 -4.7573 1.0554 13 6 1.1404 -4.8201 0.2137 14 6 1.8048 -3.6524 -0.1524 15 6 2.9752 -3.7103 -1.0525 16 6 3.0407 -2.8770 -2.1724 17 6 4.1314 -2.9320 -3.0131 18 6 5.1714 -3.8161 -2.7536 19 6 5.1114 -4.6474 -1.6346 20 6 4.0205 -4.5990 -0.7875 21 7 6.1683 -5.5322 -1.3674 22 6 7.1464 -5.7744 -2.4420 23 6 7.4541 -4.4226 -3.1015 24 8 6.2356 -3.8636 -3.5973 25 1 -0.4851 0.8400 0.0004 26 1 -0.1291 -1.4331 1.5909 27 1 -1.2566 -3.5068 2.2025 28 1 -0.4628 -5.6662 1.3363 29 1 1.4802 -5.7747 -0.1601 30 1 2.2350 -2.1881 -2.3794 31 1 4.1777 -2.2857 -3.8771 32 1 3.9760 -5.2459 0.0762 33 1 6.2508 -5.9692 -0.5053 34 1 6.7259 -6.4584 -3.1792 35 1 8.0593 -6.1980 -2.0232 36 1 8.1512 -4.5690 -3.9266 37 1 7.8925 -3.7485 -2.3656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241480798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:55 Heat of formation + Delta-G solvation = -6.221456 kcal Electronic energy + Delta-G solvation = -21159.026317 eV Core-core repulsion = 18057.991061 eV Total energy + Delta-G solvation = -3101.035256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44145 -39.68180 -37.86720 -36.15620 -35.54139 -32.95115 -31.65903 -31.24418 -29.79995 -27.77876 -27.09399 -24.93217 -23.87089 -22.57237 -22.28827 -20.64297 -19.19667 -18.73330 -18.20337 -17.48258 -17.01028 -16.33080 -16.18647 -15.72380 -15.30711 -15.08142 -14.94331 -14.56249 -14.54227 -14.35302 -14.22327 -13.55691 -13.39965 -13.13771 -12.80096 -12.71938 -12.47877 -12.39636 -12.13512 -11.85360 -11.56578 -11.34079 -11.22366 -11.02523 -10.83325 -9.58618 -9.27727 -8.88417 -8.60235 -8.13786 -6.24855 0.37599 0.70144 1.04281 1.28043 1.38073 1.48525 1.54818 2.21252 2.35405 2.62487 2.77220 3.03839 3.76636 3.81012 3.94859 4.19368 4.27409 4.31397 4.48497 4.52955 4.60452 4.63068 4.66976 4.81692 4.86840 4.90518 5.13580 5.20409 5.27776 5.34305 5.45101 5.52266 5.73514 5.83616 5.92474 6.11420 6.16097 6.22571 6.23762 6.43090 6.68131 6.73477 6.87149 6.97731 7.07917 8.33971 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.006013 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.250703 B = 4655.133725 C = 5998.508493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.041 3.959 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.470 4.470 8 H 0.074 0.926 9 C 0.100 3.900 10 C -0.186 4.186 11 C -0.108 4.108 12 C -0.243 4.243 13 C -0.080 4.080 14 C -0.190 4.190 15 C 0.008 3.992 16 C -0.125 4.125 17 C -0.117 4.117 18 C 0.028 3.972 19 C 0.138 3.862 20 C -0.166 4.166 21 N -0.756 5.756 22 C 0.089 3.911 23 C 0.034 3.966 24 O -0.332 6.332 25 H 0.288 0.712 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.144 0.856 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.601 -7.181 -3.618 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.500 4.500 8 H 0.092 0.908 9 C 0.097 3.903 10 C -0.205 4.205 11 C -0.127 4.127 12 C -0.262 4.262 13 C -0.098 4.098 14 C -0.192 4.192 15 C 0.007 3.993 16 C -0.145 4.145 17 C -0.136 4.136 18 C -0.020 4.020 19 C 0.037 3.963 20 C -0.189 4.189 21 N -0.393 5.393 22 C -0.036 4.036 23 C -0.042 4.042 24 O -0.247 6.247 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.162 0.838 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.523 -6.980 -3.971 14.877 hybrid contribution -0.136 0.696 0.641 0.955 sum 12.387 -6.285 -3.330 14.284 Atomic orbital electron populations 1.69854 1.08802 1.30484 1.35416 1.26637 0.95330 1.04024 0.91511 0.85414 0.79267 0.76845 0.79588 1.18685 1.18931 1.18686 1.19609 0.97738 0.91758 1.40845 0.90777 1.17879 0.91185 0.92238 0.88987 1.21013 1.00308 0.97183 1.01994 1.20747 0.99039 0.93174 0.99704 1.20632 1.01759 0.96937 1.06830 1.20887 0.95623 0.96186 0.97091 1.18936 1.01144 0.93751 1.05326 1.18558 0.93101 0.94390 0.93267 1.20881 0.98367 1.00340 0.94914 1.20386 0.93312 0.98716 1.01148 1.18464 0.90634 0.98857 0.94023 1.17685 0.90335 0.92674 0.95631 1.20629 0.93030 1.03407 1.01783 1.44633 1.27066 1.50433 1.17216 1.22364 0.93940 0.96649 0.90617 1.23566 0.84400 0.94655 1.01552 1.85953 1.19587 1.80275 1.38857 0.90132 0.88149 0.87343 0.86458 0.87018 0.87306 0.84800 0.85659 0.75070 0.91649 0.85378 0.83830 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.73 11.02 21.84 0.24 -42.49 16 2 C 0.04 2.04 5.14 85.28 0.44 2.48 16 3 Si 0.97 38.91 29.59 68.60 2.03 40.94 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.47 -25.21 7.12 23.34 0.17 -25.04 16 8 H 0.07 3.99 6.65 -2.91 -0.02 3.97 16 9 C 0.10 5.38 5.55 -21.11 -0.12 5.26 16 10 C -0.19 -9.83 8.62 22.46 0.19 -9.64 16 11 C -0.11 -5.08 9.96 22.02 0.22 -4.86 16 12 C -0.24 -10.62 10.03 22.39 0.22 -10.39 16 13 C -0.08 -3.59 9.51 22.46 0.21 -3.37 16 14 C -0.19 -9.38 5.52 -19.61 -0.11 -9.49 16 15 C 0.01 0.35 4.92 -20.03 -0.10 0.25 16 16 C -0.13 -5.52 8.00 22.54 0.18 -5.34 16 17 C -0.12 -4.50 9.95 22.34 0.22 -4.28 16 18 C 0.03 1.00 6.53 22.75 0.15 1.15 16 19 C 0.14 4.67 6.50 38.07 0.25 4.92 16 20 C -0.17 -6.37 9.40 22.63 0.21 -6.16 16 21 N -0.76 -18.46 5.93 -336.18 -1.99 -20.45 16 22 C 0.09 1.53 7.36 86.40 0.64 2.17 16 23 C 0.03 0.67 7.18 72.16 0.52 1.19 16 24 O -0.33 -10.11 10.32 -92.33 -0.95 -11.06 16 25 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 26 H 0.10 5.53 6.26 -2.91 -0.02 5.51 16 27 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.11 4.41 8.04 -2.91 -0.02 4.39 16 30 H 0.11 5.24 7.32 -2.91 -0.02 5.21 16 31 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 32 H 0.13 4.45 8.05 -2.91 -0.02 4.42 16 33 H 0.41 8.37 8.90 -92.71 -0.83 7.54 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -63.37 309.72 2.89 -60.47 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.27 Total: 33.74 kcal Atomic # 6 Polarization: -64.45 SS G_CDS: 3.30 Total: -61.16 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -1.75 Total: -62.94 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.95 Total: -11.06 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -63.37 2.89 -60.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241480798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.253 kcal (2) G-P(sol) polarization free energy of solvation -63.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds