Wall clock time and date at job start Fri Apr 10 2020 14:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47394 * 2 1 4 4 H 1.09003 * 109.47489 * 305.27205 * 3 2 1 5 5 N 1.46901 * 109.47632 * 185.27018 * 3 2 1 6 6 C 1.46902 * 110.99768 * 84.56128 * 5 3 2 7 7 H 1.09001 * 109.47301 * 324.91134 * 6 5 3 8 8 C 1.53004 * 109.46898 * 84.90955 * 6 5 3 9 9 C 1.52998 * 109.47137 * 204.90651 * 6 5 3 10 10 C 1.50699 * 109.46835 * 65.00242 * 9 6 5 11 11 H 1.08004 * 120.00331 * 0.02562 * 10 9 6 12 12 C 1.37879 * 119.99946 * 180.02562 * 10 9 6 13 13 N 1.31516 * 120.00120 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00141 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47150 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47375 * 119.99672 * 14 12 10 17 17 H 1.48498 * 109.47046 * 240.00156 * 14 12 10 18 18 C 1.50701 * 109.47196 * 65.26806 * 3 2 1 19 19 C 1.38242 * 119.99179 * 260.00810 * 18 3 2 20 20 C 1.38217 * 120.01286 * 180.02562 * 19 18 3 21 21 C 1.38352 * 119.98705 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.00985 * 180.02562 * 21 20 19 23 23 C 1.38348 * 119.97407 * 0.27377 * 21 20 19 24 24 C 1.38213 * 119.98584 * 359.49139 * 23 21 20 25 25 H 1.09004 * 109.46612 * 63.13651 * 1 2 3 26 26 H 1.09003 * 109.47149 * 183.13406 * 1 2 3 27 27 H 1.08993 * 109.47364 * 303.13769 * 1 2 3 28 28 H 1.09005 * 109.47326 * 240.00147 * 2 1 3 29 29 H 1.09002 * 109.47184 * 120.00619 * 2 1 3 30 30 H 1.00900 * 111.00038 * 208.51911 * 5 3 2 31 31 H 1.09006 * 109.47007 * 59.99504 * 8 6 5 32 32 H 1.08997 * 109.47002 * 180.02562 * 8 6 5 33 33 H 1.09000 * 109.47276 * 300.00019 * 8 6 5 34 34 H 1.09000 * 109.46941 * 185.00416 * 9 6 5 35 35 H 1.08997 * 109.47383 * 305.00777 * 9 6 5 36 36 H 0.96996 * 120.00427 * 179.97438 * 13 12 10 37 37 H 1.08001 * 119.99281 * 359.97438 * 19 18 3 38 38 H 1.08002 * 120.00216 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00789 * 179.72791 * 23 21 20 40 40 H 1.08002 * 119.99416 * 180.23026 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6017 1.9829 -0.8390 5 7 3.5035 1.4445 -0.1272 6 6 3.9096 1.3571 -1.5363 7 1 3.2060 0.7255 -2.0787 8 6 3.9176 2.7575 -2.1525 9 6 5.3121 0.7523 -1.6264 10 6 5.2780 -0.6710 -1.1323 11 1 4.3488 -1.1014 -0.7888 12 6 6.4330 -1.4239 -1.1187 13 7 7.5643 -0.9001 -1.5374 14 14 6.3906 -3.1884 -0.5070 15 1 5.0069 -3.5365 -0.0955 16 1 6.8283 -4.1000 -1.5945 17 1 7.3030 -3.3311 0.6559 18 6 1.6471 2.1142 1.2905 19 6 0.5498 2.9543 1.3260 20 6 0.1893 3.5711 2.5093 21 6 0.9266 3.3472 3.6584 22 17 0.4740 4.1210 5.1450 23 6 2.0277 2.5104 3.6210 24 6 2.3843 1.8903 2.4384 25 1 -0.3633 0.4644 -0.9168 26 1 -0.3633 -1.0261 0.0562 27 1 -0.3634 0.5617 0.8605 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9038 2.2585 0.3147 31 1 4.6211 3.3891 -1.6100 32 1 4.2184 2.6926 -3.1981 33 1 2.9184 3.1884 -2.0883 34 1 5.6491 0.7692 -2.6628 35 1 5.9988 1.3339 -1.0114 36 1 8.3770 -1.4296 -1.5275 37 1 -0.0254 3.1294 0.4289 38 1 -0.6677 4.2277 2.5367 39 1 2.6062 2.3386 4.5167 40 1 3.2417 1.2341 2.4099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299690039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:06 Heat of formation + Delta-G solvation = -18.387987 kcal Electronic energy + Delta-G solvation = -19874.764857 eV Core-core repulsion = 16906.602265 eV Total energy + Delta-G solvation = -2968.162591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74799 -38.53139 -37.32549 -35.53339 -34.21664 -32.07870 -31.66587 -30.37873 -29.03111 -26.02123 -24.87988 -23.89455 -23.43499 -21.41609 -20.79425 -18.39222 -18.06178 -16.87030 -16.78415 -16.33377 -15.74939 -15.47149 -15.40186 -14.66133 -14.48952 -14.36883 -14.33009 -14.08396 -13.56891 -13.55573 -13.18840 -12.99865 -12.68141 -12.57323 -12.51229 -12.37013 -12.35531 -12.09711 -11.93529 -11.84433 -11.71886 -11.38425 -11.08776 -11.02907 -10.45877 -9.94555 -9.50790 -8.99098 -8.06359 -6.10013 0.17892 0.37972 1.17866 1.41716 1.43348 1.55372 2.49477 2.68036 3.24925 3.38196 3.74647 3.91108 4.00972 4.23605 4.29158 4.34465 4.45850 4.47078 4.52407 4.57370 4.69915 4.71158 4.77174 4.97621 5.00354 5.08698 5.22189 5.25176 5.26396 5.30269 5.31175 5.38536 5.51762 5.56428 5.62407 5.77041 5.88033 5.94631 6.38426 6.54136 6.74966 7.04997 7.55520 9.06180 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.004137 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.279209 B = 6766.309084 C = 7056.480594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C 0.133 3.867 4 H 0.058 0.942 5 N -0.672 5.672 6 C 0.101 3.899 7 H 0.062 0.938 8 C -0.170 4.170 9 C 0.039 3.961 10 C -0.490 4.490 11 H 0.060 0.940 12 C -0.007 4.007 13 N -0.943 5.943 14 Si 0.952 3.048 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.286 1.286 18 C -0.077 4.077 19 C -0.098 4.098 20 C -0.111 4.111 21 C -0.045 4.045 22 Cl -0.075 7.075 23 C -0.117 4.117 24 C -0.098 4.098 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.336 0.664 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.065 0.935 34 H -0.010 1.010 35 H -0.011 1.011 36 H 0.257 0.743 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.868 9.645 7.873 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C 0.024 3.976 4 H 0.076 0.924 5 N -0.303 5.303 6 C -0.009 4.009 7 H 0.080 0.920 8 C -0.229 4.229 9 C 0.001 3.999 10 C -0.529 4.529 11 H 0.079 0.921 12 C -0.202 4.202 13 N -0.585 5.585 14 Si 0.779 3.221 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.212 1.212 18 C -0.078 4.078 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.072 4.072 22 Cl -0.046 7.046 23 C -0.136 4.136 24 C -0.117 4.117 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.065 0.935 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.683 8.987 8.093 21.423 hybrid contribution 0.622 -0.125 0.061 0.637 sum -17.061 8.862 8.155 20.883 Atomic orbital electron populations 1.21747 0.94085 1.02012 1.02257 1.21480 0.96158 0.95393 1.01502 1.20459 0.88326 0.95480 0.93349 0.92448 1.60487 1.07496 1.46866 1.15462 1.21466 0.97283 0.94530 0.87579 0.91984 1.22423 1.01483 0.97617 1.01392 1.18982 0.91889 0.94921 0.94102 1.21539 0.94269 0.97890 1.39153 0.92133 1.25829 0.95573 1.02247 0.96592 1.70102 0.99886 1.38197 1.50362 0.85583 0.78173 0.80668 0.77698 1.18859 1.21026 1.21185 1.20075 0.95834 0.96841 0.95050 1.21199 0.96293 0.95695 0.98502 1.21221 1.00358 1.00633 0.90719 1.21051 0.98307 0.99640 0.88203 1.98359 1.92195 1.80106 1.33962 1.21180 0.96354 0.96848 0.99176 1.21107 0.99867 0.98994 0.91688 0.91850 0.92538 0.92097 0.93234 0.93162 0.84550 0.93162 0.92609 0.91592 0.99213 0.99296 0.93462 0.83211 0.83043 0.84420 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.71 71.98 0.70 -2.40 16 2 C -0.11 -3.08 5.61 30.59 0.17 -2.91 16 3 C 0.13 3.63 2.10 44.17 0.09 3.72 16 4 H 0.06 1.44 6.97 -2.39 -0.02 1.42 16 5 N -0.67 -23.16 5.15 -473.30 -2.44 -25.60 16 6 C 0.10 3.88 2.33 44.92 0.10 3.98 16 7 H 0.06 2.42 7.06 -2.39 -0.02 2.41 16 8 C -0.17 -5.33 9.15 71.98 0.66 -4.67 16 9 C 0.04 1.97 4.65 29.85 0.14 2.11 16 10 C -0.49 -27.37 8.84 25.60 0.23 -27.15 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 12 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 13 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 14 Si 0.95 45.46 29.54 68.60 2.03 47.49 16 15 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 C -0.08 -1.85 4.00 -19.86 -0.08 -1.93 16 19 C -0.10 -1.87 8.67 22.27 0.19 -1.68 16 20 C -0.11 -2.02 9.83 22.29 0.22 -1.80 16 21 C -0.05 -0.94 6.32 22.32 0.14 -0.80 16 22 Cl -0.08 -1.44 28.96 -2.72 -0.08 -1.52 16 23 C -0.12 -2.66 9.83 22.29 0.22 -2.44 16 24 C -0.10 -2.51 9.01 22.27 0.20 -2.31 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.22 6.58 -2.39 -0.02 1.20 16 28 H 0.05 1.65 7.34 -2.38 -0.02 1.63 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.34 11.18 7.75 -89.69 -0.69 10.48 16 31 H 0.05 1.57 8.13 -2.38 -0.02 1.56 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.69 7.41 -2.39 -0.02 1.67 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 37 H 0.15 2.17 8.04 -2.91 -0.02 2.15 16 38 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.13 3.71 7.72 -2.91 -0.02 3.69 16 Total: -1.00 -62.97 341.77 3.56 -59.40 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.32 Total: 16.20 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 3.45 Total: -38.20 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.15 Total: -83.37 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -62.97 3.56 -59.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299690039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.015 kcal (2) G-P(sol) polarization free energy of solvation -62.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds