Wall clock time and date at job start Fri Apr 10 2020 14:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.46864 * 2 1 4 4 H 1.09005 * 109.47739 * 54.25473 * 3 2 1 5 5 N 1.46905 * 109.47152 * 294.25132 * 3 2 1 6 6 C 1.46904 * 110.99715 * 152.72222 * 5 3 2 7 7 H 1.09000 * 109.47384 * 37.15105 * 6 5 3 8 8 C 1.53006 * 109.47031 * 277.15020 * 6 5 3 9 9 C 1.53004 * 109.46956 * 157.15280 * 6 5 3 10 10 C 1.50701 * 109.46734 * 294.99572 * 9 6 5 11 11 H 1.07991 * 120.00120 * 0.02562 * 10 9 6 12 12 C 1.37875 * 119.99480 * 179.97438 * 10 9 6 13 13 N 1.31525 * 119.99896 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00308 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47230 * 89.99732 * 14 12 10 16 16 H 1.48498 * 109.47219 * 209.99493 * 14 12 10 17 17 H 1.48498 * 109.47180 * 329.99376 * 14 12 10 18 18 C 1.50704 * 109.46972 * 174.25588 * 3 2 1 19 19 C 1.38239 * 119.98768 * 79.72633 * 18 3 2 20 20 C 1.38217 * 120.01325 * 179.72799 * 19 18 3 21 21 C 1.38347 * 119.98637 * 0.54228 * 20 19 18 22 22 Cl 1.73592 * 120.01436 * 179.74940 * 21 20 19 23 23 C 1.38356 * 119.97341 * 359.73060 * 21 20 19 24 24 C 1.38217 * 119.98403 * 359.97438 * 23 21 20 25 25 H 1.08991 * 109.47522 * 65.99366 * 1 2 3 26 26 H 1.09005 * 109.46781 * 185.99571 * 1 2 3 27 27 H 1.09000 * 109.47099 * 305.99040 * 1 2 3 28 28 H 1.09004 * 109.46498 * 240.00031 * 2 1 3 29 29 H 1.08995 * 109.47052 * 120.00137 * 2 1 3 30 30 H 1.00900 * 110.99752 * 28.77598 * 5 3 2 31 31 H 1.09001 * 109.46788 * 184.92658 * 8 6 5 32 32 H 1.09000 * 109.46931 * 304.92118 * 8 6 5 33 33 H 1.08998 * 109.47258 * 64.92868 * 8 6 5 34 34 H 1.08994 * 109.46808 * 174.99887 * 9 6 5 35 35 H 1.09001 * 109.46919 * 54.99695 * 9 6 5 36 36 H 0.97000 * 119.99731 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.99488 * 0.02562 * 19 18 3 38 38 H 1.08007 * 120.00375 * 180.27122 * 20 19 18 39 39 H 1.07992 * 120.00883 * 179.97438 * 23 21 20 40 40 H 1.08004 * 119.98884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5951 1.9852 0.8341 5 7 1.6668 2.0937 -1.2628 6 6 1.5332 3.5460 -1.0866 7 1 2.2946 3.8993 -0.3913 8 6 0.1450 3.8665 -0.5287 9 6 1.7132 4.2423 -2.4371 10 6 3.1217 4.0283 -2.9287 11 1 3.8184 3.4529 -2.3373 12 6 3.5203 4.5662 -4.1340 13 7 4.7493 4.3790 -4.5633 14 14 2.3148 5.5608 -5.1573 15 1 2.4023 6.9925 -4.7725 16 1 2.6485 5.4139 -6.5968 17 1 0.9354 5.0668 -4.9160 18 6 3.5403 1.4448 0.1422 19 6 4.3390 1.1932 -0.9577 20 6 5.7151 1.2009 -0.8291 21 6 6.2931 1.4493 0.4031 22 17 8.0212 1.4526 0.5668 23 6 5.4931 1.6955 1.5048 24 6 4.1172 1.6936 1.3736 25 1 -0.3634 0.4180 -0.9387 26 1 -0.3633 -1.0221 0.1074 27 1 -0.3633 0.6039 0.8315 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.8191 1.6956 -1.6383 31 1 0.0136 4.9475 -0.4802 32 1 -0.6163 3.4369 -1.1799 33 1 0.0487 3.4436 0.4712 34 1 1.5265 5.3100 -2.3231 35 1 1.0096 3.8252 -3.1576 36 1 5.0298 4.7578 -5.4111 37 1 3.8877 0.9954 -1.9187 38 1 6.3391 1.0086 -1.6895 39 1 5.9436 1.8891 2.4670 40 1 3.4926 1.8862 2.2334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299691274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:10 Heat of formation + Delta-G solvation = 1.544463 kcal Electronic energy + Delta-G solvation = -20267.409928 eV Core-core repulsion = 17300.111672 eV Total energy + Delta-G solvation = -2967.298256 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.36794 -37.29696 -36.01034 -34.16934 -32.15015 -30.69249 -30.62841 -29.00426 -27.65936 -25.20238 -22.71114 -22.44962 -21.94385 -19.92719 -19.71344 -16.79817 -16.50294 -15.76249 -15.18145 -14.90694 -14.47154 -14.00130 -13.72300 -13.54722 -13.13145 -13.09610 -12.81617 -12.59781 -12.36899 -12.14681 -12.09569 -11.73638 -11.51785 -11.23439 -11.14189 -10.89285 -10.84112 -10.59193 -10.57034 -10.38798 -10.24640 -9.67336 -9.55415 -9.01104 -8.53703 -8.38424 -8.14234 -7.69545 -5.86631 -3.80069 1.55323 1.75934 2.47068 3.37528 3.45658 3.47935 4.04798 4.57885 4.60957 4.97765 5.11745 5.18465 5.22744 5.27974 5.47400 5.49122 5.61816 5.69415 5.73484 5.76093 5.85539 5.90177 5.93379 5.96320 6.11956 6.17308 6.28904 6.37981 6.44677 6.47867 6.58871 6.77215 6.82954 7.03288 7.18050 7.28046 7.36635 7.80725 7.93697 8.08891 8.77099 9.26915 9.76891 11.26850 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.006827 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.702301 B = 4100.251691 C = 5926.639471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.126 3.874 4 H 0.047 0.953 5 N -0.657 5.657 6 C 0.099 3.901 7 H 0.070 0.930 8 C -0.183 4.183 9 C -0.004 4.004 10 C -0.489 4.489 11 H 0.084 0.916 12 C 0.061 3.939 13 N -0.907 5.907 14 Si 0.871 3.129 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.269 1.269 18 C -0.066 4.066 19 C -0.049 4.049 20 C -0.108 4.108 21 C -0.036 4.036 22 Cl -0.088 7.088 23 C -0.123 4.123 24 C -0.113 4.113 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.335 0.665 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.010 0.990 35 H 0.014 0.986 36 H 0.258 0.742 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -8.584 12.092 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.016 3.984 4 H 0.065 0.935 5 N -0.288 5.288 6 C -0.010 4.010 7 H 0.088 0.912 8 C -0.242 4.242 9 C -0.042 4.042 10 C -0.527 4.527 11 H 0.102 0.898 12 C -0.138 4.138 13 N -0.547 5.547 14 Si 0.699 3.301 15 H -0.208 1.208 16 H -0.218 1.218 17 H -0.194 1.194 18 C -0.067 4.067 19 C -0.068 4.068 20 C -0.126 4.126 21 C -0.063 4.063 22 Cl -0.060 7.060 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.555 -8.508 11.716 14.909 hybrid contribution -1.172 0.878 -0.198 1.478 sum -4.728 -7.629 11.518 14.602 Atomic orbital electron populations 1.21829 0.95957 1.01542 1.01831 1.21704 0.95436 0.96049 1.02846 1.20416 0.90982 0.94250 0.92770 0.93504 1.60492 1.39938 1.03861 1.24532 1.21570 0.93244 0.86939 0.99254 0.91194 1.22606 0.99860 1.01874 0.99835 1.19599 0.98607 0.93996 0.91982 1.21112 0.95157 1.31891 1.04523 0.89829 1.25001 0.94746 0.96406 0.97642 1.69914 1.16971 1.46595 1.21263 0.86936 0.82508 0.80881 0.79740 1.20827 1.21780 1.19407 1.19939 0.95638 0.98230 0.92893 1.21086 0.91526 0.94812 0.99346 1.21142 0.95798 1.00113 0.95571 1.20881 0.83568 1.06017 0.95826 1.98334 1.12315 1.97209 1.98118 1.20800 0.93344 1.02486 0.97500 1.20857 0.93807 1.01210 0.97320 0.92373 0.92646 0.93005 0.90716 0.91645 0.84508 0.92504 0.93157 0.94038 0.97190 0.96729 0.93214 0.83725 0.85226 0.85854 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.65 37.16 0.36 -1.18 16 2 C -0.12 -1.42 5.47 -26.73 -0.15 -1.56 16 3 C 0.13 1.78 2.03 -68.86 -0.14 1.63 16 4 H 0.05 0.64 6.86 -51.93 -0.36 0.29 16 5 N -0.66 -10.94 5.02 -100.94 -0.51 -11.45 16 6 C 0.10 1.84 2.35 -67.70 -0.16 1.68 16 7 H 0.07 1.41 7.74 -51.93 -0.40 1.01 16 8 C -0.18 -2.74 9.15 37.16 0.34 -2.40 16 9 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 10 C -0.49 -13.43 9.39 -34.44 -0.32 -13.75 16 11 H 0.08 2.46 7.09 -52.49 -0.37 2.09 16 12 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 13 N -0.91 -27.87 13.96 55.43 0.77 -27.09 16 14 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 18 C -0.07 -1.04 4.72 -104.62 -0.49 -1.53 16 19 C -0.05 -0.87 8.44 -39.59 -0.33 -1.21 16 20 C -0.11 -1.88 9.83 -39.55 -0.39 -2.27 16 21 C -0.04 -0.59 6.32 -39.50 -0.25 -0.84 16 22 Cl -0.09 -1.32 28.96 -51.86 -1.50 -2.82 16 23 C -0.12 -1.79 9.83 -39.55 -0.39 -2.18 16 24 C -0.11 -1.62 9.67 -39.59 -0.38 -2.01 16 25 H 0.06 0.60 6.67 -51.93 -0.35 0.25 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.33 5.11 6.31 -39.29 -0.25 4.86 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 33 H 0.04 0.54 7.37 -51.93 -0.38 0.16 16 34 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 35 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.15 2.78 7.72 -52.49 -0.41 2.37 16 38 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.12 1.43 8.04 -52.48 -0.42 1.00 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -29.76 337.98 -9.57 -39.33 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.25 Total: 3.91 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -2.51 Total: -24.13 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.27 Total: -38.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.76 -9.57 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299691274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.870 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds