Wall clock time and date at job start Fri Apr 10 2020 14:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.46864 * 2 1 4 4 H 1.09005 * 109.47739 * 54.25473 * 3 2 1 5 5 N 1.46905 * 109.47152 * 294.25132 * 3 2 1 6 6 C 1.46904 * 110.99715 * 152.72222 * 5 3 2 7 7 H 1.09000 * 109.47384 * 37.15105 * 6 5 3 8 8 C 1.53006 * 109.47031 * 277.15020 * 6 5 3 9 9 C 1.53004 * 109.46956 * 157.15280 * 6 5 3 10 10 C 1.50701 * 109.46734 * 294.99572 * 9 6 5 11 11 H 1.07991 * 120.00120 * 0.02562 * 10 9 6 12 12 C 1.37875 * 119.99480 * 179.97438 * 10 9 6 13 13 N 1.31525 * 119.99896 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00308 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47230 * 89.99732 * 14 12 10 16 16 H 1.48498 * 109.47219 * 209.99493 * 14 12 10 17 17 H 1.48498 * 109.47180 * 329.99376 * 14 12 10 18 18 C 1.50704 * 109.46972 * 174.25588 * 3 2 1 19 19 C 1.38239 * 119.98768 * 79.72633 * 18 3 2 20 20 C 1.38217 * 120.01325 * 179.72799 * 19 18 3 21 21 C 1.38347 * 119.98637 * 0.54228 * 20 19 18 22 22 Cl 1.73592 * 120.01436 * 179.74940 * 21 20 19 23 23 C 1.38356 * 119.97341 * 359.73060 * 21 20 19 24 24 C 1.38217 * 119.98403 * 359.97438 * 23 21 20 25 25 H 1.08991 * 109.47522 * 65.99366 * 1 2 3 26 26 H 1.09005 * 109.46781 * 185.99571 * 1 2 3 27 27 H 1.09000 * 109.47099 * 305.99040 * 1 2 3 28 28 H 1.09004 * 109.46498 * 240.00031 * 2 1 3 29 29 H 1.08995 * 109.47052 * 120.00137 * 2 1 3 30 30 H 1.00900 * 110.99752 * 28.77598 * 5 3 2 31 31 H 1.09001 * 109.46788 * 184.92658 * 8 6 5 32 32 H 1.09000 * 109.46931 * 304.92118 * 8 6 5 33 33 H 1.08998 * 109.47258 * 64.92868 * 8 6 5 34 34 H 1.08994 * 109.46808 * 174.99887 * 9 6 5 35 35 H 1.09001 * 109.46919 * 54.99695 * 9 6 5 36 36 H 0.97000 * 119.99731 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.99488 * 0.02562 * 19 18 3 38 38 H 1.08007 * 120.00375 * 180.27122 * 20 19 18 39 39 H 1.07992 * 120.00883 * 179.97438 * 23 21 20 40 40 H 1.08004 * 119.98884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5951 1.9852 0.8341 5 7 1.6668 2.0937 -1.2628 6 6 1.5332 3.5460 -1.0866 7 1 2.2946 3.8993 -0.3913 8 6 0.1450 3.8665 -0.5287 9 6 1.7132 4.2423 -2.4371 10 6 3.1217 4.0283 -2.9287 11 1 3.8184 3.4529 -2.3373 12 6 3.5203 4.5662 -4.1340 13 7 4.7493 4.3790 -4.5633 14 14 2.3148 5.5608 -5.1573 15 1 2.4023 6.9925 -4.7725 16 1 2.6485 5.4139 -6.5968 17 1 0.9354 5.0668 -4.9160 18 6 3.5403 1.4448 0.1422 19 6 4.3390 1.1932 -0.9577 20 6 5.7151 1.2009 -0.8291 21 6 6.2931 1.4493 0.4031 22 17 8.0212 1.4526 0.5668 23 6 5.4931 1.6955 1.5048 24 6 4.1172 1.6936 1.3736 25 1 -0.3634 0.4180 -0.9387 26 1 -0.3633 -1.0221 0.1074 27 1 -0.3633 0.6039 0.8315 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.8191 1.6956 -1.6383 31 1 0.0136 4.9475 -0.4802 32 1 -0.6163 3.4369 -1.1799 33 1 0.0487 3.4436 0.4712 34 1 1.5265 5.3100 -2.3231 35 1 1.0096 3.8252 -3.1576 36 1 5.0298 4.7578 -5.4111 37 1 3.8877 0.9954 -1.9187 38 1 6.3391 1.0086 -1.6895 39 1 5.9436 1.8891 2.4670 40 1 3.4926 1.8862 2.2334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299691274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:09 Heat of formation + Delta-G solvation = -14.569897 kcal Electronic energy + Delta-G solvation = -20268.108699 eV Core-core repulsion = 17300.111672 eV Total energy + Delta-G solvation = -2967.997027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59678 -38.58041 -37.27336 -35.59544 -34.10506 -31.89626 -31.77421 -30.58762 -29.17776 -26.30511 -24.54757 -23.70351 -23.04189 -21.28928 -21.09109 -18.68476 -17.99371 -16.99756 -16.50521 -16.38161 -15.69985 -15.66523 -15.02997 -14.73039 -14.58473 -14.33035 -14.24410 -13.99785 -13.77449 -13.47798 -13.30774 -13.21594 -12.91460 -12.49317 -12.37962 -12.33734 -12.19343 -11.93728 -11.73584 -11.68418 -11.55136 -11.52591 -11.29810 -11.01202 -10.60700 -9.83244 -9.38680 -8.96548 -8.09010 -6.06063 0.29358 0.49822 1.21830 1.38084 1.40198 1.50197 2.46791 2.78484 3.23315 3.43551 3.89953 3.99194 4.06299 4.16103 4.25813 4.33843 4.47446 4.50179 4.55111 4.60392 4.66643 4.78117 4.86945 4.98804 5.00499 5.15225 5.17617 5.20758 5.23845 5.27823 5.33237 5.38425 5.46400 5.51821 5.60325 5.78216 5.84503 6.00835 6.44702 6.61823 6.84230 7.05074 7.54009 9.07282 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.006827 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.702301 B = 4100.251691 C = 5926.639471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.131 3.869 4 H 0.063 0.937 5 N -0.676 5.676 6 C 0.107 3.893 7 H 0.050 0.950 8 C -0.172 4.172 9 C -0.005 4.005 10 C -0.482 4.482 11 H 0.051 0.949 12 C -0.004 4.004 13 N -0.957 5.957 14 Si 0.936 3.064 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.249 1.249 18 C -0.072 4.072 19 C -0.069 4.069 20 C -0.131 4.131 21 C -0.048 4.048 22 Cl -0.081 7.081 23 C -0.118 4.118 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.343 0.657 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.011 0.989 35 H 0.015 0.985 36 H 0.256 0.744 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.152 0.848 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 -8.397 14.273 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.081 0.919 5 N -0.309 5.309 6 C -0.003 4.003 7 H 0.068 0.932 8 C -0.230 4.230 9 C -0.042 4.042 10 C -0.521 4.521 11 H 0.070 0.930 12 C -0.198 4.198 13 N -0.600 5.600 14 Si 0.762 3.238 15 H -0.202 1.202 16 H -0.221 1.221 17 H -0.173 1.173 18 C -0.073 4.073 19 C -0.088 4.088 20 C -0.150 4.150 21 C -0.074 4.074 22 Cl -0.052 7.052 23 C -0.137 4.137 24 C -0.126 4.126 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.170 0.830 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.196 -8.331 13.914 17.360 hybrid contribution -0.269 0.763 -0.824 1.155 sum -6.465 -7.567 13.089 16.443 Atomic orbital electron populations 1.21796 0.94276 1.02663 1.01954 1.21650 0.96781 0.94135 1.02815 1.20471 0.89786 0.95717 0.91888 0.91876 1.60294 1.40747 1.03151 1.26678 1.21283 0.95146 0.87661 0.96168 0.93181 1.22455 0.97193 1.02244 1.01156 1.19585 0.95390 0.94646 0.94616 1.21446 0.96964 1.29896 1.03753 0.93040 1.25870 0.96427 0.98147 0.99362 1.70093 1.19315 1.48696 1.21895 0.85871 0.80997 0.79336 0.77558 1.20234 1.22149 1.17263 1.20225 0.96672 0.97554 0.92826 1.20915 0.91906 0.96754 0.99187 1.21133 0.95932 1.01750 0.96165 1.20995 0.84281 1.06356 0.95805 1.98328 1.11657 1.97196 1.98046 1.21177 0.93541 1.00967 0.97975 1.21242 0.94086 0.99627 0.97695 0.92888 0.91273 0.91981 0.92188 0.90292 0.83550 0.92374 0.92080 0.91550 0.97077 0.96648 0.93524 0.86521 0.86678 0.83049 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.65 71.98 0.69 -1.81 16 2 C -0.12 -2.44 5.47 30.59 0.17 -2.27 16 3 C 0.13 3.45 2.03 44.17 0.09 3.54 16 4 H 0.06 1.49 6.86 -2.38 -0.02 1.47 16 5 N -0.68 -21.91 5.02 -473.27 -2.38 -24.29 16 6 C 0.11 3.81 2.35 44.92 0.11 3.92 16 7 H 0.05 1.97 7.74 -2.39 -0.02 1.95 16 8 C -0.17 -4.54 9.15 71.98 0.66 -3.88 16 9 C 0.00 -0.21 3.72 29.85 0.11 -0.10 16 10 C -0.48 -27.12 9.39 25.60 0.24 -26.88 16 11 H 0.05 3.18 7.09 -2.92 -0.02 3.16 16 12 C 0.00 -0.22 5.47 84.65 0.46 0.24 16 13 N -0.96 -61.14 13.96 21.45 0.30 -60.84 16 14 Si 0.94 45.36 27.47 68.60 1.88 47.25 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 17 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 18 C -0.07 -2.22 4.72 -19.86 -0.09 -2.31 16 19 C -0.07 -2.58 8.44 22.26 0.19 -2.39 16 20 C -0.13 -4.88 9.83 22.29 0.22 -4.66 16 21 C -0.05 -1.56 6.32 22.32 0.14 -1.42 16 22 Cl -0.08 -2.42 28.96 -2.72 -0.08 -2.50 16 23 C -0.12 -3.25 9.83 22.29 0.22 -3.03 16 24 C -0.11 -2.86 9.67 22.26 0.22 -2.64 16 25 H 0.05 0.95 6.67 -2.39 -0.02 0.93 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.34 9.96 6.31 -89.69 -0.57 9.39 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 33 H 0.07 1.44 7.37 -2.39 -0.02 1.43 16 34 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 35 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.12 4.91 7.72 -2.91 -0.02 4.88 16 38 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.16 3.00 8.04 -2.91 -0.02 2.98 16 Total: -1.00 -66.55 337.98 3.54 -63.01 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.39 Total: 21.06 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 3.42 Total: -43.69 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.08 Total: -85.13 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.50 kcal Total: -66.55 3.54 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299691274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.438 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds