Wall clock time and date at job start Fri Apr 10 2020 14:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47037 * 2 1 4 4 H 1.08998 * 109.46739 * 305.46688 * 3 2 1 5 5 N 1.46901 * 109.47004 * 65.46796 * 3 2 1 6 6 C 1.46897 * 110.99762 * 205.73807 * 5 3 2 7 7 H 1.09002 * 109.47377 * 322.90392 * 6 5 3 8 8 C 1.53006 * 109.47038 * 82.90576 * 6 5 3 9 9 C 1.53003 * 109.46981 * 202.90034 * 6 5 3 10 10 C 1.50698 * 109.46624 * 65.00312 * 9 6 5 11 11 H 1.07997 * 120.00466 * 359.97438 * 10 9 6 12 12 C 1.37884 * 119.99950 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99527 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00269 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47583 * 59.99945 * 14 12 10 16 16 H 1.48501 * 109.47280 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47032 * 299.99736 * 14 12 10 18 18 C 1.50702 * 109.46809 * 185.46608 * 3 2 1 19 19 C 1.38243 * 119.98686 * 279.72475 * 18 3 2 20 20 C 1.38209 * 120.01185 * 179.73056 * 19 18 3 21 21 C 1.38353 * 119.98394 * 0.54823 * 20 19 18 22 22 Cl 1.73609 * 120.01227 * 179.70612 * 21 20 19 23 23 C 1.38349 * 119.97846 * 359.72506 * 21 20 19 24 24 C 1.38223 * 119.98265 * 0.02562 * 23 21 20 25 25 H 1.08993 * 109.47755 * 304.63578 * 1 2 3 26 26 H 1.09004 * 109.46598 * 64.64263 * 1 2 3 27 27 H 1.09002 * 109.46721 * 184.63207 * 1 2 3 28 28 H 1.08995 * 109.47392 * 239.99562 * 2 1 3 29 29 H 1.09001 * 109.46765 * 119.99587 * 2 1 3 30 30 H 1.00892 * 111.00086 * 81.78055 * 5 3 2 31 31 H 1.09001 * 109.47315 * 64.66297 * 8 6 5 32 32 H 1.09002 * 109.46956 * 184.66399 * 8 6 5 33 33 H 1.09002 * 109.46983 * 304.65942 * 8 6 5 34 34 H 1.09003 * 109.47021 * 184.99642 * 9 6 5 35 35 H 1.08996 * 109.47226 * 304.99965 * 9 6 5 36 36 H 0.97004 * 119.99512 * 179.97438 * 13 12 10 37 37 H 1.08004 * 119.99035 * 0.02562 * 19 18 3 38 38 H 1.07994 * 120.00842 * 180.27399 * 20 19 18 39 39 H 1.07999 * 120.01257 * 179.97438 * 23 21 20 40 40 H 1.07994 * 119.99197 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5989 1.9838 -0.8370 5 7 1.6610 2.0959 1.2600 6 6 1.5639 3.5517 1.0896 7 1 2.3441 3.8907 0.4081 8 6 0.1923 3.9071 0.5119 9 6 1.7388 4.2368 2.4465 10 6 3.1339 3.9876 2.9587 11 1 3.8264 3.3991 2.3752 12 6 3.5264 4.5109 4.1725 13 7 2.6829 5.2271 4.8834 14 14 5.2559 4.2027 4.8072 15 1 6.2424 4.7532 3.8434 16 1 5.4258 4.8675 6.1242 17 1 5.4745 2.7417 4.9590 18 6 3.5409 1.4447 -0.1353 19 6 4.3348 1.2060 0.9710 20 6 5.7112 1.2023 0.8463 21 6 6.2948 1.4487 -0.3837 22 17 8.0239 1.4518 -0.5395 23 6 5.4999 1.6931 -1.4894 24 6 4.1234 1.6914 -1.3645 25 1 -0.3634 0.5840 0.8455 26 1 -0.3633 0.4401 -0.9287 27 1 -0.3633 -1.0243 0.0830 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3075 1.8605 1.9980 31 1 -0.5839 3.6432 1.2301 32 1 0.1502 4.9771 0.3081 33 1 0.0338 3.3544 -0.4141 34 1 1.5787 5.3092 2.3353 35 1 1.0144 3.8326 3.1536 36 1 2.9589 5.5949 5.7375 37 1 3.8791 1.0177 1.9319 38 1 6.3312 1.0114 1.7097 39 1 5.9549 1.8859 -2.4497 40 1 3.5028 1.8818 -2.2276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299691279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:14 Heat of formation + Delta-G solvation = -6.628619 kcal Electronic energy + Delta-G solvation = -20332.961743 eV Core-core repulsion = 17365.309076 eV Total energy + Delta-G solvation = -2967.652667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.65326 -37.19287 -36.12283 -34.08273 -32.24825 -30.97831 -30.75283 -28.69829 -27.40047 -25.09219 -23.07691 -22.73237 -21.98207 -19.98889 -19.39878 -17.24235 -16.31511 -15.70168 -15.38643 -14.76503 -14.55442 -14.27485 -13.89278 -13.66423 -13.35185 -13.29493 -12.77292 -12.31124 -12.20932 -11.88100 -11.69621 -11.40592 -11.38048 -11.25259 -11.18989 -10.97835 -10.80392 -10.73809 -10.60715 -10.40432 -10.36986 -10.24089 -9.26063 -9.07993 -8.83677 -8.43172 -8.36146 -7.72730 -6.02739 -4.05307 1.28791 1.45041 2.22311 3.29369 3.35262 3.37512 3.77713 4.42725 4.76671 4.82993 4.97762 4.99859 5.32615 5.39337 5.40554 5.50870 5.53566 5.70162 5.85052 5.85965 5.98347 6.07468 6.08574 6.17282 6.21975 6.27516 6.33887 6.39704 6.41992 6.53790 6.67478 6.71518 6.91519 6.93603 6.96105 7.51571 7.64605 7.96730 8.02730 8.22150 8.37557 9.01210 9.58945 11.08249 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.008112 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.490761 B = 3450.668129 C = 5574.437675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C 0.122 3.878 4 H 0.081 0.919 5 N -0.670 5.670 6 C 0.087 3.913 7 H 0.029 0.971 8 C -0.135 4.135 9 C 0.022 3.978 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.063 3.937 13 N -0.891 5.891 14 Si 0.882 3.118 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.096 4.096 19 C -0.088 4.088 20 C -0.105 4.105 21 C -0.039 4.039 22 Cl -0.084 7.084 23 C -0.114 4.114 24 C -0.105 4.105 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.355 0.645 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 -9.612 -12.062 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C 0.011 3.989 4 H 0.099 0.901 5 N -0.304 5.304 6 C -0.022 4.022 7 H 0.047 0.953 8 C -0.193 4.193 9 C -0.016 4.016 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.710 3.290 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.098 4.098 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.066 4.066 22 Cl -0.055 7.055 23 C -0.132 4.132 24 C -0.124 4.124 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.178 0.822 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.323 -9.600 -11.959 15.392 hybrid contribution 2.278 0.300 0.387 2.330 sum 3.602 -9.300 -11.572 15.277 Atomic orbital electron populations 1.21662 0.95257 1.00682 1.02402 1.21465 0.96519 0.94955 1.01259 1.20718 0.87202 0.95901 0.95084 0.90138 1.60793 1.54867 1.09628 1.05119 1.21620 0.94364 0.86589 0.99632 0.95278 1.21814 0.98449 0.99483 0.99559 1.19253 0.96929 0.95452 0.89926 1.21200 0.98030 1.33071 1.03857 0.92604 1.24958 0.96839 0.95179 0.96930 1.69951 1.34916 1.34705 1.13422 0.86808 0.85432 0.78557 0.78202 1.20253 1.21308 1.20106 1.20975 0.98227 0.97385 0.93228 1.21005 0.92497 0.98036 0.99087 1.21029 0.95341 1.00112 0.95916 1.20868 0.83897 1.06079 0.95734 1.98346 1.11771 1.97181 1.98185 1.20940 0.93531 1.01198 0.97563 1.20963 0.93732 1.00237 0.97451 0.90773 0.93708 0.93827 0.92630 0.91945 0.82181 0.92655 0.93498 0.94386 0.96190 0.95645 0.92954 0.84581 0.85213 0.85449 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.86 37.16 0.37 -1.36 16 2 C -0.10 -1.31 5.59 -26.73 -0.15 -1.46 16 3 C 0.12 1.77 2.02 -68.86 -0.14 1.63 16 4 H 0.08 1.15 6.81 -51.93 -0.35 0.80 16 5 N -0.67 -11.78 5.44 -100.95 -0.55 -12.33 16 6 C 0.09 1.73 2.42 -67.71 -0.16 1.56 16 7 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 8 C -0.14 -2.32 9.40 37.16 0.35 -1.97 16 9 C 0.02 0.54 4.59 -27.88 -0.13 0.41 16 10 C -0.52 -13.87 8.13 -34.44 -0.28 -14.15 16 11 H 0.06 1.42 6.35 -52.49 -0.33 1.09 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 14 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.10 -1.43 4.64 -104.62 -0.49 -1.92 16 19 C -0.09 -1.40 8.04 -39.59 -0.32 -1.72 16 20 C -0.11 -1.64 9.83 -39.55 -0.39 -2.02 16 21 C -0.04 -0.57 6.32 -39.50 -0.25 -0.82 16 22 Cl -0.08 -1.13 28.96 -51.86 -1.50 -2.63 16 23 C -0.11 -1.52 9.83 -39.55 -0.39 -1.91 16 24 C -0.10 -1.41 9.67 -39.59 -0.38 -1.80 16 25 H 0.07 1.03 7.65 -51.93 -0.40 0.63 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.35 6.83 4.79 -39.30 -0.19 6.64 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.57 7.23 -51.93 -0.38 0.19 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.14 2.22 6.50 -52.48 -0.34 1.88 16 38 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.13 1.41 8.04 -52.49 -0.42 0.99 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -28.03 338.92 -9.85 -37.88 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.17 Total: 5.06 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -2.46 Total: -23.88 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.19 Total: -37.76 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.03 -9.85 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299691279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.253 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds