Wall clock time and date at job start Fri Apr 10 2020 14:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47037 * 2 1 4 4 H 1.08998 * 109.46739 * 305.46688 * 3 2 1 5 5 N 1.46901 * 109.47004 * 65.46796 * 3 2 1 6 6 C 1.46897 * 110.99762 * 205.73807 * 5 3 2 7 7 H 1.09002 * 109.47377 * 322.90392 * 6 5 3 8 8 C 1.53006 * 109.47038 * 82.90576 * 6 5 3 9 9 C 1.53003 * 109.46981 * 202.90034 * 6 5 3 10 10 C 1.50698 * 109.46624 * 65.00312 * 9 6 5 11 11 H 1.07997 * 120.00466 * 359.97438 * 10 9 6 12 12 C 1.37884 * 119.99950 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99527 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00269 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47583 * 59.99945 * 14 12 10 16 16 H 1.48501 * 109.47280 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47032 * 299.99736 * 14 12 10 18 18 C 1.50702 * 109.46809 * 185.46608 * 3 2 1 19 19 C 1.38243 * 119.98686 * 279.72475 * 18 3 2 20 20 C 1.38209 * 120.01185 * 179.73056 * 19 18 3 21 21 C 1.38353 * 119.98394 * 0.54823 * 20 19 18 22 22 Cl 1.73609 * 120.01227 * 179.70612 * 21 20 19 23 23 C 1.38349 * 119.97846 * 359.72506 * 21 20 19 24 24 C 1.38223 * 119.98265 * 0.02562 * 23 21 20 25 25 H 1.08993 * 109.47755 * 304.63578 * 1 2 3 26 26 H 1.09004 * 109.46598 * 64.64263 * 1 2 3 27 27 H 1.09002 * 109.46721 * 184.63207 * 1 2 3 28 28 H 1.08995 * 109.47392 * 239.99562 * 2 1 3 29 29 H 1.09001 * 109.46765 * 119.99587 * 2 1 3 30 30 H 1.00892 * 111.00086 * 81.78055 * 5 3 2 31 31 H 1.09001 * 109.47315 * 64.66297 * 8 6 5 32 32 H 1.09002 * 109.46956 * 184.66399 * 8 6 5 33 33 H 1.09002 * 109.46983 * 304.65942 * 8 6 5 34 34 H 1.09003 * 109.47021 * 184.99642 * 9 6 5 35 35 H 1.08996 * 109.47226 * 304.99965 * 9 6 5 36 36 H 0.97004 * 119.99512 * 179.97438 * 13 12 10 37 37 H 1.08004 * 119.99035 * 0.02562 * 19 18 3 38 38 H 1.07994 * 120.00842 * 180.27399 * 20 19 18 39 39 H 1.07999 * 120.01257 * 179.97438 * 23 21 20 40 40 H 1.07994 * 119.99197 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5989 1.9838 -0.8370 5 7 1.6610 2.0959 1.2600 6 6 1.5639 3.5517 1.0896 7 1 2.3441 3.8907 0.4081 8 6 0.1923 3.9071 0.5119 9 6 1.7388 4.2368 2.4465 10 6 3.1339 3.9876 2.9587 11 1 3.8264 3.3991 2.3752 12 6 3.5264 4.5109 4.1725 13 7 2.6829 5.2271 4.8834 14 14 5.2559 4.2027 4.8072 15 1 6.2424 4.7532 3.8434 16 1 5.4258 4.8675 6.1242 17 1 5.4745 2.7417 4.9590 18 6 3.5409 1.4447 -0.1353 19 6 4.3348 1.2060 0.9710 20 6 5.7112 1.2023 0.8463 21 6 6.2948 1.4487 -0.3837 22 17 8.0239 1.4518 -0.5395 23 6 5.4999 1.6931 -1.4894 24 6 4.1234 1.6914 -1.3645 25 1 -0.3634 0.5840 0.8455 26 1 -0.3633 0.4401 -0.9287 27 1 -0.3633 -1.0243 0.0830 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3075 1.8605 1.9980 31 1 -0.5839 3.6432 1.2301 32 1 0.1502 4.9771 0.3081 33 1 0.0338 3.3544 -0.4141 34 1 1.5787 5.3092 2.3353 35 1 1.0144 3.8326 3.1536 36 1 2.9589 5.5949 5.7375 37 1 3.8791 1.0177 1.9319 38 1 6.3312 1.0114 1.7097 39 1 5.9549 1.8859 -2.4497 40 1 3.5028 1.8818 -2.2276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299691279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:13 Heat of formation + Delta-G solvation = -20.282861 kcal Electronic energy + Delta-G solvation = -20333.553835 eV Core-core repulsion = 17365.309076 eV Total energy + Delta-G solvation = -2968.244759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80735 -38.47426 -37.29792 -35.62354 -34.10658 -32.08789 -31.84391 -30.12657 -29.21052 -26.27973 -24.97212 -23.87949 -23.04329 -21.25188 -20.91395 -18.57245 -18.23349 -16.96551 -16.66506 -16.46340 -15.86868 -15.59793 -15.18285 -14.81844 -14.53718 -14.44855 -14.35010 -13.70890 -13.50153 -13.24637 -13.21825 -13.08908 -12.67574 -12.60871 -12.57996 -12.43132 -12.34736 -12.23493 -11.82258 -11.77862 -11.65786 -11.52668 -11.17391 -10.92550 -10.54923 -9.98197 -9.52601 -9.14421 -8.17085 -6.25072 0.16437 0.34079 1.13075 1.37193 1.38567 1.45292 2.39665 2.65694 3.15099 3.47811 3.73419 3.84580 3.94069 4.27621 4.30908 4.38254 4.46183 4.49686 4.62539 4.66431 4.75927 4.79301 4.85536 4.98345 5.06338 5.13345 5.23262 5.25304 5.27887 5.30305 5.38519 5.40204 5.46915 5.57879 5.67228 5.70172 5.85238 5.88842 6.26063 6.48238 6.69170 6.91006 7.43113 8.94623 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.008112 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.490761 B = 3450.668129 C = 5574.437675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C 0.125 3.875 4 H 0.091 0.909 5 N -0.670 5.670 6 C 0.100 3.900 7 H 0.021 0.979 8 C -0.127 4.127 9 C 0.028 3.972 10 C -0.525 4.525 11 H 0.065 0.935 12 C 0.008 3.992 13 N -0.931 5.931 14 Si 0.943 3.057 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.261 1.261 18 C -0.105 4.105 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.049 4.049 22 Cl -0.076 7.076 23 C -0.111 4.111 24 C -0.102 4.102 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.343 0.657 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.066 0.934 34 H -0.010 1.010 35 H -0.003 1.003 36 H 0.260 0.740 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.153 0.847 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -10.691 -14.284 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 C 0.015 3.985 4 H 0.109 0.891 5 N -0.303 5.303 6 C -0.010 4.010 7 H 0.039 0.961 8 C -0.185 4.185 9 C -0.009 4.009 10 C -0.563 4.563 11 H 0.083 0.917 12 C -0.190 4.190 13 N -0.571 5.571 14 Si 0.768 3.232 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.186 1.186 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.140 4.140 21 C -0.075 4.075 22 Cl -0.047 7.047 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.165 0.835 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.009 0.991 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.943 -10.697 -14.202 17.885 hybrid contribution 2.089 0.617 1.037 2.413 sum 4.032 -10.079 -13.165 17.064 Atomic orbital electron populations 1.21620 0.94710 1.01303 1.02010 1.21438 0.96876 0.93566 1.01779 1.20808 0.87326 0.96831 0.93562 0.89097 1.60819 1.54871 1.08097 1.06515 1.21363 0.95741 0.87635 0.96270 0.96142 1.21725 0.96318 1.00042 1.00433 1.19121 0.95527 0.93984 0.92317 1.21577 0.98840 1.32119 1.03747 0.91681 1.25765 1.00554 0.95184 0.97460 1.70085 1.36924 1.36216 1.13904 0.85834 0.80839 0.79120 0.77394 1.19994 1.21349 1.18601 1.21045 0.98193 0.97801 0.93667 1.20988 0.92963 0.99370 0.99111 1.21120 0.95328 1.00925 0.96640 1.21025 0.84564 1.06112 0.95848 1.98346 1.11082 1.97143 1.98137 1.21270 0.93544 0.99920 0.98187 1.21286 0.94151 0.98961 0.97668 0.92951 0.92548 0.92469 0.90639 0.92872 0.83487 0.93317 0.93309 0.91541 0.99144 0.98434 0.93073 0.85952 0.85234 0.82930 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.86 71.98 0.71 -2.32 16 2 C -0.10 -2.26 5.59 30.60 0.17 -2.09 16 3 C 0.13 3.39 2.02 44.17 0.09 3.47 16 4 H 0.09 2.29 6.81 -2.39 -0.02 2.28 16 5 N -0.67 -23.26 5.44 -473.28 -2.57 -25.83 16 6 C 0.10 3.92 2.42 44.92 0.11 4.03 16 7 H 0.02 0.84 7.68 -2.39 -0.02 0.82 16 8 C -0.13 -4.22 9.40 71.98 0.68 -3.54 16 9 C 0.03 1.42 4.59 29.85 0.14 1.56 16 10 C -0.52 -28.30 8.13 25.60 0.21 -28.09 16 11 H 0.07 3.33 6.35 -2.91 -0.02 3.32 16 12 C 0.01 0.47 5.46 84.66 0.46 0.93 16 13 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 14 Si 0.94 44.00 29.54 68.60 2.03 46.02 16 15 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 C -0.11 -2.95 4.64 -19.86 -0.09 -3.04 16 19 C -0.11 -3.31 8.04 22.26 0.18 -3.13 16 20 C -0.12 -3.68 9.83 22.29 0.22 -3.46 16 21 C -0.05 -1.34 6.32 22.32 0.14 -1.20 16 22 Cl -0.08 -1.91 28.96 -2.72 -0.08 -1.99 16 23 C -0.11 -2.64 9.83 22.29 0.22 -2.42 16 24 C -0.10 -2.43 9.67 22.27 0.22 -2.21 16 25 H 0.05 1.38 7.65 -2.39 -0.02 1.36 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.34 13.38 4.79 -89.70 -0.43 12.95 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.82 7.23 -2.39 -0.02 1.80 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.12 4.08 6.50 -2.91 -0.02 4.06 16 38 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 40 H 0.16 2.77 8.04 -2.91 -0.02 2.74 16 Total: -1.00 -60.81 338.92 3.69 -57.12 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.59 Total: 22.02 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 3.44 Total: -41.52 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -2.29 Total: -81.66 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -60.81 3.69 -57.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299691279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.838 kcal (2) G-P(sol) polarization free energy of solvation -60.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds