Wall clock time and date at job start Fri Apr 10 2020 14:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47061 * 2 1 4 4 H 1.09003 * 109.47601 * 56.92712 * 3 2 1 5 5 C 1.50703 * 109.47277 * 296.93078 * 3 2 1 6 6 C 1.38237 * 119.98828 * 99.99953 * 5 3 2 7 7 C 1.38217 * 120.01197 * 179.97438 * 6 5 3 8 8 C 1.38348 * 119.98579 * 359.97438 * 7 6 5 9 9 Cl 1.73608 * 120.01224 * 180.02562 * 8 7 6 10 10 C 1.38347 * 119.97759 * 0.02562 * 8 7 6 11 11 C 1.38215 * 119.98654 * 359.97438 * 10 8 7 12 12 N 1.46898 * 109.47290 * 176.92949 * 3 2 1 13 13 C 1.46900 * 111.00607 * 181.96815 * 12 3 2 14 14 C 1.52993 * 109.47505 * 196.08072 * 13 12 3 15 15 C 1.46899 * 110.99919 * 305.92425 * 12 3 2 16 16 C 1.50699 * 109.47056 * 298.78799 * 15 12 3 17 17 H 1.07991 * 120.00232 * 3.80300 * 16 15 12 18 18 C 1.37876 * 119.99613 * 183.80487 * 16 15 12 19 19 N 1.31518 * 119.99733 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00385 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47200 * 90.00295 * 20 18 16 22 22 H 1.48506 * 109.47194 * 209.99934 * 20 18 16 23 23 H 1.48500 * 109.47391 * 330.00343 * 20 18 16 24 24 H 1.09003 * 109.47918 * 305.79068 * 1 2 3 25 25 H 1.09008 * 109.47152 * 65.78629 * 1 2 3 26 26 H 1.09006 * 109.47525 * 185.78433 * 1 2 3 27 27 H 1.08999 * 109.47209 * 239.99605 * 2 1 3 28 28 H 1.09000 * 109.46628 * 119.99393 * 2 1 3 29 29 H 1.07997 * 119.99304 * 0.25701 * 6 5 3 30 30 H 1.08003 * 120.00357 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.01114 * 179.97438 * 10 8 7 32 32 H 1.08001 * 119.99682 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.47025 * 316.08140 * 13 12 3 34 34 H 1.08998 * 109.46732 * 76.07560 * 13 12 3 35 35 H 1.08997 * 109.47116 * 180.60789 * 14 13 12 36 36 H 1.09005 * 109.46836 * 300.60461 * 14 13 12 37 37 H 1.08993 * 109.47381 * 60.60688 * 14 13 12 38 38 H 1.09004 * 109.47127 * 58.78734 * 15 12 3 39 39 H 1.09000 * 109.47306 * 178.78622 * 15 12 3 40 40 H 0.97004 * 120.00215 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6323 1.9720 0.8612 5 6 1.6007 2.1306 -1.2667 6 6 0.5031 2.9708 -1.2517 7 6 0.1001 3.6026 -2.4131 8 6 0.7958 3.3944 -3.5906 9 17 0.2907 4.1881 -5.0497 10 6 1.8942 2.5533 -3.6051 11 6 2.2963 1.9221 -2.4432 12 7 3.5070 1.4432 0.0742 13 6 4.0311 2.8146 0.1233 14 6 5.5262 2.8013 -0.2014 15 6 3.9764 0.6587 1.2241 16 6 3.4523 1.2712 2.4974 17 1 2.7830 2.1175 2.4540 18 6 3.8275 0.7508 3.7179 19 7 3.3698 1.2850 4.8291 20 14 4.9848 -0.7135 3.7931 21 1 6.3888 -0.2327 3.8462 22 1 4.6900 -1.5156 5.0077 23 1 4.7956 -1.5566 2.5853 24 1 -0.3635 0.6010 0.8336 25 1 -0.3634 0.4215 -0.9373 26 1 -0.3634 -1.0225 0.1036 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 -0.0369 3.1372 -0.3313 30 1 -0.7572 4.2594 -2.4011 31 1 2.4374 2.3901 -4.5242 32 1 3.1540 1.2658 -2.4542 33 1 3.5062 3.4305 -0.6069 34 1 3.8797 3.2258 1.1213 35 1 5.9172 3.8176 -0.1543 36 1 6.0496 2.1767 0.5225 37 1 5.6767 2.4001 -1.2036 38 1 3.6138 -0.3656 1.1375 39 1 5.0662 0.6580 1.2430 40 1 3.6334 0.9187 5.6878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348543589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:59 Heat of formation + Delta-G solvation = 12.142082 kcal Electronic energy + Delta-G solvation = -20456.004301 eV Core-core repulsion = 17489.165593 eV Total energy + Delta-G solvation = -2966.838708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68362 -37.44969 -36.24507 -33.52608 -32.46618 -30.89319 -30.35130 -29.68170 -27.23208 -24.61433 -23.22602 -22.66951 -21.74585 -20.44478 -18.97198 -17.24383 -16.61274 -15.66198 -15.45805 -14.68766 -14.45044 -14.19751 -14.05353 -13.49721 -13.31226 -13.14133 -12.81155 -12.62124 -12.26951 -12.01208 -11.78559 -11.54351 -11.36450 -11.33556 -11.06948 -10.89034 -10.72981 -10.65183 -10.51502 -10.35995 -10.24933 -9.96290 -9.74017 -9.50605 -8.86627 -8.61792 -8.33101 -7.25876 -6.14312 -4.13663 1.31476 1.46559 2.18866 3.23939 3.32516 3.35141 3.80962 4.35685 4.70928 4.98341 5.02330 5.09409 5.21620 5.55636 5.56676 5.61617 5.66228 5.79533 5.85231 5.90979 6.03971 6.06568 6.17794 6.25071 6.29207 6.36746 6.41380 6.44009 6.50599 6.68623 6.70410 6.80644 6.84556 6.90534 6.98679 7.02117 7.12820 7.53859 8.01156 8.06726 8.40428 8.87818 9.48815 10.98587 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027041 B = 0.004594 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.207805 B = 6092.805717 C = 6485.995641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.127 3.873 4 H 0.062 0.938 5 C -0.052 4.052 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.044 4.044 9 Cl -0.088 7.088 10 C -0.117 4.117 11 C -0.081 4.081 12 N -0.528 5.528 13 C 0.051 3.949 14 C -0.139 4.139 15 C 0.149 3.851 16 C -0.547 4.547 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.027 0.973 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 1.884 -15.026 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.018 3.982 4 H 0.080 0.920 5 C -0.052 4.052 6 C -0.125 4.125 7 C -0.133 4.133 8 C -0.071 4.071 9 Cl -0.059 7.059 10 C -0.136 4.136 11 C -0.100 4.100 12 N -0.251 5.251 13 C -0.078 4.078 14 C -0.196 4.196 15 C 0.023 3.977 16 C -0.586 4.586 17 H 0.092 0.908 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.139 1.713 -15.382 16.021 hybrid contribution 0.248 -0.178 0.917 0.966 sum -3.891 1.535 -14.465 15.057 Atomic orbital electron populations 1.21764 0.96410 1.01124 1.01287 1.21558 0.94820 0.95611 1.02905 1.20453 0.89792 0.95558 0.92382 0.92027 1.20228 0.93892 0.95064 0.96058 1.21069 0.97126 0.96605 0.97713 1.20928 1.00244 1.00930 0.91242 1.20857 0.98665 1.00035 0.87529 1.98342 1.90937 1.79626 1.37031 1.21050 0.95954 0.97282 0.99330 1.21096 0.99504 0.98670 0.90699 1.62487 1.06503 1.12686 1.43434 1.21945 0.94946 0.90402 1.00468 1.21676 0.96468 1.00346 1.01149 1.20281 0.95765 0.94123 0.87534 1.21621 1.29961 1.17054 0.89961 0.90820 1.24939 0.95691 0.96593 0.95654 1.69923 1.44694 1.41362 0.97661 0.86859 0.81631 0.83399 0.77903 1.20245 1.21365 1.18812 0.92681 0.93314 0.93188 0.92257 0.89864 0.85378 0.85531 0.85545 0.84234 0.92924 0.92988 0.93583 0.92471 0.93226 0.94885 0.95468 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.42 37.16 0.35 -1.79 16 2 C -0.11 -1.86 5.09 -26.74 -0.14 -2.00 16 3 C 0.13 2.23 1.37 -68.87 -0.09 2.13 16 4 H 0.06 1.25 6.54 -51.93 -0.34 0.91 16 5 C -0.05 -0.78 2.78 -104.62 -0.29 -1.07 16 6 C -0.11 -1.47 8.90 -39.59 -0.35 -1.82 16 7 C -0.11 -1.45 9.83 -39.55 -0.39 -1.84 16 8 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 9 Cl -0.09 -1.01 28.96 -51.86 -1.50 -2.52 16 10 C -0.12 -1.49 9.83 -39.55 -0.39 -1.88 16 11 C -0.08 -1.14 8.77 -39.59 -0.35 -1.49 16 12 N -0.53 -10.01 3.82 -229.48 -0.88 -10.89 16 13 C 0.05 0.94 5.25 -3.83 -0.02 0.92 16 14 C -0.14 -2.31 9.97 37.15 0.37 -1.93 16 15 C 0.15 3.33 3.56 -4.98 -0.02 3.31 16 16 C -0.55 -14.30 8.01 -34.44 -0.28 -14.57 16 17 H 0.07 2.11 6.19 -52.49 -0.32 1.79 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.47 13.96 55.43 0.77 -25.70 16 20 Si 0.87 20.69 27.39 -169.99 -4.66 16.03 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -5.96 6.65 56.52 0.38 -5.58 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.66 7.08 -51.92 -0.37 0.29 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.59 6.11 -51.93 -0.32 1.28 16 29 H 0.13 1.68 8.03 -52.49 -0.42 1.26 16 30 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.14 1.98 7.72 -52.49 -0.40 1.57 16 33 H 0.05 0.91 6.42 -51.93 -0.33 0.58 16 34 H 0.05 1.12 6.44 -51.93 -0.33 0.79 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.03 6.70 -51.93 -0.35 0.68 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.75 5.39 -51.93 -0.28 0.47 16 39 H 0.03 0.62 5.82 -51.93 -0.30 0.32 16 40 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -27.43 327.15 -9.16 -36.60 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.89 Total: 2.45 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.94 Total: -20.91 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.10 Total: -36.58 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.66 Total: 16.03 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.43 -9.16 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348543589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.739 kcal (2) G-P(sol) polarization free energy of solvation -27.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds