Wall clock time and date at job start Fri Apr 10 2020 14:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 H 1.08992 * 109.47146 * 54.99831 * 3 2 1 5 5 C 1.53002 * 109.46839 * 294.99796 * 3 2 1 6 6 C 1.53002 * 109.46934 * 174.99773 * 3 2 1 7 7 H 1.09002 * 109.46831 * 179.97438 * 6 3 2 8 8 N 1.46894 * 109.47143 * 299.99617 * 6 3 2 9 9 C 1.46894 * 111.00442 * 275.00163 * 8 6 3 10 10 C 1.50706 * 109.47461 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99528 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99856 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99947 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99673 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47299 * 89.99528 * 14 12 10 16 16 H 1.48498 * 109.46672 * 209.99624 * 14 12 10 17 17 H 1.48504 * 109.46948 * 329.99236 * 14 12 10 18 18 C 1.50696 * 109.46922 * 59.99852 * 6 3 2 19 19 C 1.38247 * 119.98658 * 100.00234 * 18 6 3 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 6 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98930 * 359.40143 * 23 21 20 25 25 H 1.09002 * 109.46819 * 60.00133 * 1 2 3 26 26 H 1.09008 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47539 * 300.00362 * 1 2 3 28 28 H 1.08999 * 109.47027 * 239.99755 * 2 1 3 29 29 H 1.09002 * 109.46819 * 119.99867 * 2 1 3 30 30 H 1.09002 * 109.47272 * 299.99955 * 5 3 2 31 31 H 1.08995 * 109.47533 * 59.99944 * 5 3 2 32 32 H 1.09005 * 109.46846 * 180.02562 * 5 3 2 33 33 H 1.00902 * 111.00177 * 38.96090 * 8 6 3 34 34 H 1.08996 * 109.47182 * 300.00166 * 9 8 6 35 35 H 1.08998 * 109.47006 * 59.99666 * 9 8 6 36 36 H 0.97005 * 119.99213 * 180.02562 * 13 12 10 37 37 H 1.08003 * 119.99321 * 359.97438 * 19 18 6 38 38 H 1.08002 * 120.00776 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 40 40 H 1.07997 * 119.99445 * 180.32231 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 1 3.9282 2.4719 0.1253 8 7 3.9534 0.7876 1.3810 9 6 3.9228 1.7357 2.5026 10 6 4.3269 1.0276 3.7702 11 1 4.5806 -0.0218 3.7450 12 6 4.3716 1.7194 4.9620 13 7 4.0621 2.9973 4.9925 14 14 4.8731 0.8419 6.5329 15 1 6.3446 0.9404 6.7068 16 1 4.1942 1.4752 7.6919 17 1 4.4791 -0.5874 6.4489 18 6 4.1657 0.6989 -1.0380 19 6 4.6815 1.3975 -2.1138 20 6 5.2332 0.7145 -3.1813 21 6 5.2687 -0.6686 -3.1733 22 17 5.9621 -1.5271 -4.5134 23 6 4.7467 -1.3672 -2.0994 24 6 4.2011 -0.6830 -1.0295 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5874 -2.1492 31 1 0.5490 2.1252 -1.3971 32 1 1.9990 3.1540 -1.3076 33 1 3.3670 -0.0121 1.5674 34 1 4.6166 2.5530 2.3065 35 1 2.9144 2.1341 2.6142 36 1 4.0939 3.4840 5.8310 37 1 4.6533 2.4771 -2.1201 38 1 5.6364 1.2603 -4.0214 39 1 4.7700 -2.4470 -2.0947 40 1 3.7983 -1.2282 -0.1887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411476610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:32 Heat of formation + Delta-G solvation = -2.278824 kcal Electronic energy + Delta-G solvation = -20015.044825 eV Core-core repulsion = 17047.580779 eV Total energy + Delta-G solvation = -2967.464046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86450 -37.45352 -36.17607 -33.98903 -32.38144 -31.15575 -30.65141 -29.27511 -26.98236 -24.59670 -23.86273 -22.61077 -21.50815 -21.26112 -19.16987 -17.05655 -16.40266 -15.49727 -15.22762 -15.08101 -14.82046 -14.53326 -13.84318 -13.53281 -13.45191 -13.20101 -13.04790 -12.55642 -12.38701 -12.02416 -11.90932 -11.65215 -11.52224 -11.34743 -11.31275 -11.17659 -10.85306 -10.69490 -10.68265 -10.46061 -10.25956 -10.16827 -9.91605 -9.23076 -8.86590 -8.52197 -8.33571 -7.33781 -6.05941 -4.07817 1.31617 1.44510 2.18810 3.30689 3.36734 3.39967 3.78675 4.40724 4.81120 4.95074 4.98114 5.06816 5.13763 5.19160 5.29800 5.32444 5.51026 5.56568 5.66771 5.70432 5.77050 5.79719 5.92098 5.96110 6.09239 6.11725 6.16943 6.26298 6.32006 6.33443 6.39984 6.51709 6.63342 6.82713 6.96849 7.20641 7.39110 7.74881 8.08906 8.32950 8.55408 9.00981 9.57285 11.05002 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.004352 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.080294 B = 6431.661212 C = 7217.192742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.116 4.116 4 H 0.078 0.922 5 C -0.145 4.145 6 C 0.123 3.877 7 H 0.082 0.918 8 N -0.681 5.681 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.038 4.038 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.045 4.045 22 Cl -0.087 7.087 23 C -0.115 4.115 24 C -0.085 4.085 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.330 0.670 34 H 0.027 0.973 35 H -0.011 1.011 36 H 0.261 0.739 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -5.267 -16.517 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.136 4.136 4 H 0.096 0.904 5 C -0.203 4.203 6 C 0.012 3.988 7 H 0.100 0.900 8 N -0.312 5.312 9 C 0.069 3.931 10 C -0.553 4.553 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.039 4.039 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.071 4.071 22 Cl -0.059 7.059 23 C -0.133 4.133 24 C -0.103 4.103 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.045 0.955 35 H 0.007 0.993 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.514 -5.113 -16.583 17.534 hybrid contribution -0.534 -0.268 0.967 1.137 sum -3.049 -5.381 -15.615 16.796 Atomic orbital electron populations 1.21794 0.96181 1.01136 1.01663 1.21730 0.95681 0.96743 1.02129 1.21795 0.96571 0.96546 0.98726 0.90411 1.21866 1.00857 1.00188 0.97352 1.20568 0.91424 0.97462 0.89393 0.89955 1.60860 1.57200 1.10972 1.02164 1.19577 0.95306 0.91262 0.86962 1.21161 1.45512 0.96758 0.91852 0.92031 1.24965 0.95424 0.94883 0.99161 1.69959 1.48937 1.07982 1.26783 0.86505 0.78674 0.79682 0.82585 1.20615 1.21319 1.19855 1.20075 0.95356 0.93829 0.94669 1.20988 0.98481 1.00026 0.93110 1.20919 1.00874 0.91975 0.99476 1.20828 1.03006 0.92476 0.90832 1.98342 1.83599 1.77573 1.46359 1.21019 0.99249 1.00144 0.92925 1.21006 0.98121 0.94042 0.97148 0.92874 0.93152 0.92767 0.91567 0.91526 0.92615 0.92906 0.92921 0.84997 0.95464 0.99310 0.92916 0.85477 0.85535 0.85474 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 37.16 0.36 -1.41 16 2 C -0.13 -1.64 3.98 -26.73 -0.11 -1.75 16 3 C -0.12 -1.67 2.29 -90.62 -0.21 -1.88 16 4 H 0.08 1.29 7.45 -51.93 -0.39 0.90 16 5 C -0.14 -1.76 8.54 37.16 0.32 -1.45 16 6 C 0.12 2.00 2.15 -68.87 -0.15 1.85 16 7 H 0.08 1.44 7.66 -51.93 -0.40 1.04 16 8 N -0.68 -13.61 5.69 -109.23 -0.62 -14.23 16 9 C 0.20 4.89 5.24 -4.98 -0.03 4.87 16 10 C -0.51 -14.19 9.32 -34.44 -0.32 -14.51 16 11 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.04 -0.55 3.80 -104.62 -0.40 -0.95 16 19 C -0.11 -1.39 8.70 -39.59 -0.34 -1.74 16 20 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 21 C -0.04 -0.57 6.32 -39.50 -0.25 -0.82 16 22 Cl -0.09 -1.00 28.96 -51.86 -1.50 -2.50 16 23 C -0.11 -1.46 9.83 -39.55 -0.39 -1.85 16 24 C -0.08 -1.17 7.17 -39.59 -0.28 -1.46 16 25 H 0.05 0.58 6.56 -51.93 -0.34 0.23 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.83 6.02 -51.93 -0.31 0.51 16 29 H 0.07 0.95 5.92 -51.93 -0.31 0.64 16 30 H 0.05 0.66 6.64 -51.93 -0.34 0.32 16 31 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.33 6.28 5.54 -39.29 -0.22 6.06 16 34 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 35 H -0.01 -0.29 7.44 -51.93 -0.39 -0.67 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.13 1.47 8.04 -52.48 -0.42 1.04 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.13 1.81 6.36 -52.49 -0.33 1.48 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -28.61 330.01 -9.59 -38.20 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.87 Total: 4.10 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.28 Total: -21.36 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.11 Total: -39.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.61 -9.59 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411476610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.920 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds