Wall clock time and date at job start Fri Apr 10 2020 14:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47319 * 2 1 4 4 C 1.50701 * 109.47031 * 240.00313 * 2 1 3 5 5 H 1.08000 * 120.00105 * 240.00018 * 4 2 1 6 6 C 1.37875 * 120.00055 * 59.99740 * 4 2 1 7 7 N 1.31512 * 120.00502 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00170 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46807 * 60.00337 * 8 6 4 10 10 H 1.48489 * 109.47454 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47182 * 300.00848 * 8 6 4 12 12 C 1.52998 * 109.47401 * 120.00447 * 2 1 3 13 13 N 1.46499 * 109.46755 * 300.00005 * 12 2 1 14 14 C 1.34777 * 120.00043 * 180.02562 * 13 12 2 15 15 O 1.21589 * 119.99967 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00050 * 180.02562 * 14 13 12 17 17 C 1.39977 * 119.99778 * 184.66960 * 16 14 13 18 18 C 1.38904 * 120.47030 * 145.03240 * 17 16 14 19 19 N 1.31783 * 120.71496 * 179.97438 * 18 17 16 20 20 C 1.31862 * 121.82006 * 0.02562 * 19 18 17 21 21 C 1.38477 * 120.88455 * 359.97438 * 20 19 18 22 22 F 1.35099 * 120.40784 * 179.97438 * 21 20 19 23 23 C 1.38749 * 119.18161 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47327 * 300.00245 * 1 2 3 25 25 H 1.09005 * 109.47044 * 59.99672 * 1 2 3 26 26 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47213 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46894 * 300.00462 * 3 2 1 29 29 H 1.09000 * 109.46769 * 60.00296 * 3 2 1 30 30 H 0.97000 * 120.00523 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47381 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47284 * 59.99715 * 12 2 1 33 33 H 0.97003 * 120.00417 * 359.97438 * 13 12 2 34 34 H 0.96998 * 119.99980 * 4.66391 * 16 14 13 35 35 H 1.08003 * 119.64122 * 359.95890 * 18 17 16 36 36 H 1.07999 * 119.56002 * 179.97438 * 20 19 18 37 37 H 1.08004 * 120.82478 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6035 8 14 2.3224 -1.1194 -4.0081 9 1 1.8278 -2.5197 -4.0083 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4453 14 6 1.8777 -0.4909 3.6694 15 8 2.5768 -1.4795 3.7810 16 7 1.4280 0.1441 4.7699 17 6 1.8453 -0.2742 6.0389 18 6 2.0401 0.6508 7.0566 19 7 2.4324 0.2623 8.2532 20 6 2.6552 -1.0067 8.5339 21 6 2.4831 -1.9882 7.5723 22 9 2.7146 -3.2854 7.8702 23 6 2.0699 -1.6229 6.2992 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7094 1.1619 -3.4844 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.9943 0.7581 2.3564 34 1 0.8153 0.8909 4.6825 35 1 1.8685 1.6998 6.8651 36 1 2.9763 -1.2843 9.5270 37 1 1.9268 -2.3665 5.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459546024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:45 Heat of formation + Delta-G solvation = -39.630196 kcal Electronic energy + Delta-G solvation = -21487.149522 eV Core-core repulsion = 17986.189081 eV Total energy + Delta-G solvation = -3500.960441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.09957 -40.90539 -39.40424 -36.73850 -35.03684 -33.55828 -31.90960 -31.04494 -29.80751 -25.81438 -25.79826 -25.12076 -24.11301 -23.20610 -20.99327 -18.99057 -18.85625 -18.04471 -17.19304 -17.02643 -16.02810 -15.98152 -15.83607 -15.27565 -14.80304 -14.55517 -14.06129 -13.89609 -13.62021 -13.30212 -13.06076 -12.96846 -12.48823 -12.28788 -11.53412 -11.27331 -11.07568 -10.88119 -10.78333 -10.46904 -10.40951 -10.23095 -9.85745 -9.72779 -9.46701 -9.40409 -8.88661 -8.77345 -8.46469 -8.32963 -6.08577 -4.19075 0.68329 0.93522 2.57266 3.14479 3.26445 3.31019 3.34717 3.51339 3.86555 4.23214 4.28858 4.38669 4.58808 4.71285 4.86583 5.18497 5.25203 5.61297 5.87325 6.03326 6.08289 6.22544 6.39052 6.55749 6.63305 6.72311 6.72560 6.86906 6.92895 6.99136 7.27016 7.47051 7.56914 7.62908 7.92886 8.00377 8.11656 8.30897 8.62852 8.81438 9.47252 10.92872 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.037792 B = 0.003269 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.724104 B = 8563.419627 C = 9036.011814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.721 5.721 14 C 0.695 3.305 15 O -0.580 6.580 16 N -0.686 5.686 17 C 0.159 3.841 18 C 0.059 3.941 19 N -0.438 5.438 20 C 0.044 3.956 21 C 0.071 3.929 22 F -0.128 7.128 23 C -0.119 4.119 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.397 0.603 34 H 0.412 0.588 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 1.277 16.565 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.025 3.975 13 N -0.375 5.375 14 C 0.396 3.604 15 O -0.457 6.457 16 N -0.335 5.335 17 C 0.060 3.940 18 C -0.102 4.102 19 N -0.145 5.145 20 C -0.115 4.115 21 C 0.048 3.952 22 F -0.107 7.107 23 C -0.148 4.148 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.248 0.752 35 H 0.182 0.818 36 H 0.184 0.816 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.684 1.080 17.011 17.059 hybrid contribution -0.300 -0.594 -1.635 1.766 sum -0.984 0.485 15.376 15.415 Atomic orbital electron populations 1.21836 0.97692 0.99246 1.00081 1.18369 0.92844 0.92810 0.90380 1.21838 0.98672 0.98272 1.00081 1.20927 1.31732 1.12236 0.89809 0.92397 1.24870 0.94773 0.94895 0.98878 1.69782 1.36541 1.22668 1.23450 0.86616 0.79279 0.79797 0.82082 1.20236 1.21301 1.20226 1.21728 0.98203 0.95584 0.82006 1.45573 1.54803 1.32837 1.04254 1.16090 0.80585 0.83117 0.80640 1.90909 1.42544 1.26789 1.85479 1.42669 1.50256 1.37579 1.02970 1.18381 0.97513 0.92417 0.85711 1.22683 0.99599 0.99678 0.88258 1.67669 1.09853 1.17020 1.19961 1.22773 1.01321 0.87614 0.99825 1.18682 1.02243 0.79700 0.94528 1.91529 1.91977 1.33685 1.93511 1.21897 0.99820 0.96925 0.96118 0.97589 0.89526 0.95363 0.95358 0.89525 0.97575 0.92873 0.92514 0.92520 0.76730 0.75209 0.81772 0.81638 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.15 0.30 -2.49 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.88 8.01 -34.44 -0.28 -13.16 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -22.94 9.35 55.43 0.52 -22.43 16 8 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 C 0.15 2.94 4.50 -4.04 -0.02 2.92 16 13 N -0.72 -11.60 4.96 -65.23 -0.32 -11.93 16 14 C 0.70 11.06 8.42 -86.92 -0.73 10.33 16 15 O -0.58 -11.34 13.82 5.29 0.07 -11.27 16 16 N -0.69 -7.92 5.36 -14.13 -0.08 -8.00 16 17 C 0.16 1.90 6.32 -83.54 -0.53 1.37 16 18 C 0.06 0.60 11.12 -17.33 -0.19 0.41 16 19 N -0.44 -4.90 10.35 -13.03 -0.13 -5.03 16 20 C 0.04 0.46 11.17 -17.45 -0.19 0.27 16 21 C 0.07 0.85 7.34 -39.30 -0.29 0.56 16 22 F -0.13 -1.59 17.28 2.25 0.04 -1.55 16 23 C -0.12 -1.59 8.80 -39.04 -0.34 -1.93 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.07 6.07 -51.93 -0.32 1.75 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.40 5.56 6.18 -40.82 -0.25 5.31 16 34 H 0.41 3.26 8.84 -40.82 -0.36 2.90 16 35 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.17 2.52 6.32 -52.48 -0.33 2.19 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -28.57 311.41 -6.74 -35.31 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.37 Total: 6.37 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.14 Total: -1.41 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.02 Total: -47.39 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.57 -6.74 -35.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459546024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.323 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds