Wall clock time and date at job start Fri Apr 10 2020 14:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47319 * 2 1 4 4 C 1.50701 * 109.47031 * 240.00313 * 2 1 3 5 5 H 1.08000 * 120.00105 * 240.00018 * 4 2 1 6 6 C 1.37875 * 120.00055 * 59.99740 * 4 2 1 7 7 N 1.31512 * 120.00502 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00170 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46807 * 60.00337 * 8 6 4 10 10 H 1.48489 * 109.47454 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47182 * 300.00848 * 8 6 4 12 12 C 1.52998 * 109.47401 * 120.00447 * 2 1 3 13 13 N 1.46499 * 109.46755 * 300.00005 * 12 2 1 14 14 C 1.34777 * 120.00043 * 180.02562 * 13 12 2 15 15 O 1.21589 * 119.99967 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00050 * 180.02562 * 14 13 12 17 17 C 1.39977 * 119.99778 * 184.66960 * 16 14 13 18 18 C 1.38904 * 120.47030 * 145.03240 * 17 16 14 19 19 N 1.31783 * 120.71496 * 179.97438 * 18 17 16 20 20 C 1.31862 * 121.82006 * 0.02562 * 19 18 17 21 21 C 1.38477 * 120.88455 * 359.97438 * 20 19 18 22 22 F 1.35099 * 120.40784 * 179.97438 * 21 20 19 23 23 C 1.38749 * 119.18161 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47327 * 300.00245 * 1 2 3 25 25 H 1.09005 * 109.47044 * 59.99672 * 1 2 3 26 26 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47213 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46894 * 300.00462 * 3 2 1 29 29 H 1.09000 * 109.46769 * 60.00296 * 3 2 1 30 30 H 0.97000 * 120.00523 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47381 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47284 * 59.99715 * 12 2 1 33 33 H 0.97003 * 120.00417 * 359.97438 * 13 12 2 34 34 H 0.96998 * 119.99980 * 4.66391 * 16 14 13 35 35 H 1.08003 * 119.64122 * 359.95890 * 18 17 16 36 36 H 1.07999 * 119.56002 * 179.97438 * 20 19 18 37 37 H 1.08004 * 120.82478 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6035 8 14 2.3224 -1.1194 -4.0081 9 1 1.8278 -2.5197 -4.0083 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4453 14 6 1.8777 -0.4909 3.6694 15 8 2.5768 -1.4795 3.7810 16 7 1.4280 0.1441 4.7699 17 6 1.8453 -0.2742 6.0389 18 6 2.0401 0.6508 7.0566 19 7 2.4324 0.2623 8.2532 20 6 2.6552 -1.0067 8.5339 21 6 2.4831 -1.9882 7.5723 22 9 2.7146 -3.2854 7.8702 23 6 2.0699 -1.6229 6.2992 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7094 1.1619 -3.4844 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.9943 0.7581 2.3564 34 1 0.8153 0.8909 4.6825 35 1 1.8685 1.6998 6.8651 36 1 2.9763 -1.2843 9.5270 37 1 1.9268 -2.3665 5.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459546024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:44 Heat of formation + Delta-G solvation = -57.995642 kcal Electronic energy + Delta-G solvation = -21487.945908 eV Core-core repulsion = 17986.189081 eV Total energy + Delta-G solvation = -3501.756827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.04000 -41.97202 -40.51956 -38.33166 -36.18821 -35.14034 -33.09057 -32.51880 -30.84652 -27.54732 -27.47897 -26.80710 -25.11875 -24.21026 -22.23153 -20.65389 -20.02623 -19.15851 -18.07739 -18.04086 -17.72422 -17.07915 -16.90333 -16.62656 -16.52657 -15.84135 -15.34922 -14.97996 -14.82387 -14.72756 -14.42820 -14.21527 -13.99975 -13.38922 -13.19883 -13.09122 -12.69459 -12.62725 -12.26685 -12.13821 -12.05232 -11.63292 -11.47889 -11.22241 -10.82578 -10.70837 -10.44846 -10.39022 -10.07639 -9.38273 -8.02505 -6.17944 -0.19148 -0.01352 1.43050 1.44342 1.47158 1.53095 1.94760 2.45745 2.59723 2.92607 3.18517 3.21629 3.49032 3.72032 3.79115 3.94763 4.38300 4.41610 4.52248 4.71334 4.78178 4.93351 4.98070 5.06966 5.09139 5.12349 5.21029 5.33835 5.55878 5.62997 5.67880 5.68665 5.85550 6.17159 6.22494 6.43868 6.71317 6.86340 6.93185 7.39517 7.50012 8.96058 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.037792 B = 0.003269 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.724104 B = 8563.419627 C = 9036.011814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.277 1.277 12 C 0.166 3.834 13 N -0.713 5.713 14 C 0.697 3.303 15 O -0.619 6.619 16 N -0.664 5.664 17 C 0.145 3.855 18 C 0.078 3.922 19 N -0.447 5.447 20 C 0.057 3.943 21 C 0.058 3.942 22 F -0.135 7.135 23 C -0.137 4.137 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.410 0.590 34 H 0.432 0.568 35 H 0.201 0.799 36 H 0.195 0.805 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 2.696 18.250 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.041 3.959 13 N -0.368 5.368 14 C 0.398 3.602 15 O -0.499 6.499 16 N -0.315 5.315 17 C 0.046 3.954 18 C -0.083 4.083 19 N -0.155 5.155 20 C -0.102 4.102 21 C 0.036 3.964 22 F -0.113 7.113 23 C -0.166 4.166 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.248 0.752 34 H 0.272 0.728 35 H 0.218 0.782 36 H 0.212 0.788 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.064 2.540 18.733 18.934 hybrid contribution -0.186 -1.042 -2.070 2.325 sum -1.249 1.498 16.663 16.776 Atomic orbital electron populations 1.21676 0.96975 0.98706 1.00536 1.18357 0.93339 0.93090 0.90046 1.21676 0.97930 0.97739 1.00543 1.21258 1.31814 1.12266 0.91604 0.93699 1.25410 0.95134 0.95568 1.00864 1.69886 1.36923 1.23191 1.23672 0.85864 0.78642 0.78845 0.79733 1.20321 1.20893 1.20304 1.21215 0.97006 0.94844 0.82798 1.45193 1.55107 1.33063 1.03435 1.16143 0.80142 0.82727 0.81235 1.90900 1.44295 1.28633 1.86110 1.42293 1.49983 1.37482 1.01707 1.18496 0.98651 0.92183 0.86056 1.23182 0.97197 1.00814 0.87099 1.67810 1.10361 1.17061 1.20238 1.23199 0.99493 0.87018 1.00467 1.18786 1.03141 0.79896 0.94555 1.91509 1.92142 1.34173 1.93509 1.21847 1.01016 0.97435 0.96275 0.94097 0.91983 0.96356 0.96363 0.91981 0.94073 0.93018 0.94220 0.94165 0.75182 0.72779 0.78250 0.78823 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.47 16 4 C -0.53 -27.24 8.01 25.60 0.21 -27.04 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -46.63 9.35 21.45 0.20 -46.43 16 8 Si 0.94 41.78 29.54 68.60 2.03 43.81 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 C 0.17 6.60 4.50 86.38 0.39 6.99 16 13 N -0.71 -21.85 4.96 -478.54 -2.37 -24.23 16 14 C 0.70 21.40 8.42 179.05 1.51 22.90 16 15 O -0.62 -24.43 13.82 -4.00 -0.06 -24.49 16 16 N -0.66 -13.83 5.36 -316.88 -1.70 -15.53 16 17 C 0.15 3.18 6.32 38.23 0.24 3.42 16 18 C 0.08 1.33 11.12 84.86 0.94 2.28 16 19 N -0.45 -8.60 10.35 -195.14 -2.02 -10.62 16 20 C 0.06 1.06 11.17 84.75 0.95 2.01 16 21 C 0.06 1.35 7.34 22.45 0.16 1.52 16 22 F -0.13 -3.31 17.28 44.97 0.78 -2.53 16 23 C -0.14 -3.62 8.80 22.62 0.20 -3.42 16 24 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 25 H 0.06 2.93 6.07 -2.38 -0.01 2.91 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 2.93 6.07 -2.38 -0.01 2.91 16 29 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 30 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.41 10.27 6.18 -92.71 -0.57 9.70 16 34 H 0.43 5.32 8.84 -92.71 -0.82 4.50 16 35 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.14 4.43 6.32 -2.91 -0.02 4.42 16 Total: -1.00 -62.54 311.41 2.76 -59.79 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.27 Total: 16.26 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.17 Total: 3.97 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -5.89 Total: -96.80 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -62.54 2.76 -59.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459546024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.791 kcal (2) G-P(sol) polarization free energy of solvation -62.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds