Wall clock time and date at job start Fri Apr 10 2020 14:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47476 * 2 1 4 4 C 1.50698 * 109.47223 * 239.99480 * 2 1 3 5 5 H 1.07999 * 120.00507 * 240.00058 * 4 2 1 6 6 C 1.37878 * 119.99679 * 60.00153 * 4 2 1 7 7 N 1.31512 * 120.00187 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00095 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47272 * 59.99904 * 8 6 4 10 10 H 1.48501 * 109.47240 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46769 * 299.99984 * 8 6 4 12 12 C 1.53009 * 109.47074 * 119.99740 * 2 1 3 13 13 N 1.46499 * 109.46958 * 299.99680 * 12 2 1 14 14 C 1.34772 * 119.99714 * 179.97438 * 13 12 2 15 15 O 1.21597 * 120.00084 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00108 * 180.02562 * 14 13 12 17 17 C 1.40093 * 119.99878 * 184.21071 * 16 14 13 18 18 C 1.39099 * 120.49712 * 325.89410 * 17 16 14 19 19 C 1.38637 * 118.39163 * 180.26420 * 18 17 16 20 20 C 1.38149 * 119.28517 * 359.46052 * 19 18 17 21 21 N 1.31944 * 120.94305 * 0.29938 * 20 19 18 22 22 C 1.31953 * 121.75934 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.69649 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.46984 * 300.00504 * 1 2 3 25 25 H 1.08996 * 109.47199 * 60.00440 * 1 2 3 26 26 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47766 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47182 * 300.00010 * 3 2 1 29 29 H 1.09001 * 109.47425 * 59.99766 * 3 2 1 30 30 H 0.97002 * 120.00519 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46590 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47010 * 60.00336 * 12 2 1 33 33 H 0.96993 * 119.99832 * 0.02562 * 13 12 2 34 34 H 0.97001 * 119.99568 * 4.20642 * 16 14 13 35 35 H 1.07996 * 120.80926 * 0.02562 * 18 17 16 36 36 H 1.07998 * 120.35431 * 179.73494 * 19 18 17 37 37 H 1.07996 * 119.53122 * 180.27877 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8259 -0.4208 -5.2204 11 1 3.8063 -1.1211 -4.0080 12 6 2.0400 -0.7212 1.2494 13 7 1.5517 -0.0305 2.4455 14 6 1.8769 -0.4912 3.6695 15 8 2.5759 -1.4799 3.7811 16 7 1.4273 0.1439 4.7700 17 6 1.8365 -0.2814 6.0405 18 6 2.0683 -1.6295 6.2929 19 6 2.4666 -2.0026 7.5674 20 6 2.6303 -1.0310 8.5357 21 7 2.4076 0.2410 8.2650 22 6 2.0223 0.6391 7.0674 23 9 1.8055 1.9525 6.8363 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7087 1.1611 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.9938 0.7579 2.3564 34 1 0.8204 0.8955 4.6822 35 1 1.9375 -2.3682 5.5161 36 1 2.6511 -3.0411 7.7994 37 1 2.9448 -1.3167 9.5286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832028892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:48 Heat of formation + Delta-G solvation = -52.907684 kcal Electronic energy + Delta-G solvation = -21671.317956 eV Core-core repulsion = 18169.781760 eV Total energy + Delta-G solvation = -3501.536196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.10124 -41.89533 -40.53665 -38.35259 -36.21687 -35.14170 -33.23045 -32.63854 -30.73117 -27.56616 -27.47994 -26.79126 -25.03274 -24.25528 -22.20709 -20.66219 -20.07148 -19.08383 -18.76848 -17.91861 -17.72526 -17.19074 -16.63444 -16.55990 -16.30137 -15.84305 -15.38169 -14.88097 -14.75176 -14.58722 -14.36612 -14.16022 -14.01286 -13.49043 -13.21720 -13.09769 -12.70073 -12.62376 -12.29277 -12.13762 -12.11953 -11.60149 -11.48880 -11.22466 -10.85046 -10.71760 -10.52144 -10.39765 -10.08402 -9.34251 -8.02135 -6.17976 -0.18702 0.07608 1.39687 1.45198 1.47226 1.53385 1.94541 2.44963 2.47604 2.62842 3.11841 3.21987 3.43265 3.84820 4.02089 4.23184 4.39003 4.52213 4.63449 4.70373 4.89045 4.96329 5.05347 5.06382 5.08867 5.15622 5.19733 5.33143 5.54432 5.65531 5.66986 5.67589 5.77278 6.14918 6.21381 6.43027 6.58744 6.85424 6.87039 7.35246 7.50037 8.96615 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.003415 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.159376 B = 8197.975040 C = 8638.414019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.166 3.834 13 N -0.716 5.716 14 C 0.702 3.298 15 O -0.611 6.611 16 N -0.672 5.672 17 C 0.092 3.908 18 C -0.070 4.070 19 C -0.144 4.144 20 C 0.115 3.885 21 N -0.515 5.515 22 C 0.259 3.741 23 F -0.119 7.119 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.408 0.592 34 H 0.423 0.577 35 H 0.150 0.850 36 H 0.183 0.817 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 -2.083 18.933 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.042 3.958 13 N -0.370 5.370 14 C 0.402 3.598 15 O -0.491 6.491 16 N -0.322 5.322 17 C -0.008 4.008 18 C -0.098 4.098 19 C -0.164 4.164 20 C -0.042 4.042 21 N -0.230 5.230 22 C 0.103 3.897 23 F -0.098 7.098 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.245 0.755 34 H 0.261 0.739 35 H 0.168 0.832 36 H 0.200 0.800 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.204 -2.137 19.374 19.493 hybrid contribution -0.361 0.134 -2.057 2.093 sum -0.565 -2.003 17.317 17.441 Atomic orbital electron populations 1.21674 0.97033 0.98808 1.00369 1.18362 0.93320 0.92942 0.90259 1.21685 0.97946 0.97991 1.00342 1.21250 1.31805 1.12291 0.91440 0.93406 1.25448 0.95124 0.95570 1.00997 1.69900 1.36953 1.23327 1.23669 0.85825 0.78627 0.78866 0.79541 1.20117 1.21033 1.20258 1.21248 0.97057 0.94968 0.82504 1.45250 1.55150 1.33050 1.03597 1.16021 0.80074 0.82797 0.80886 1.90862 1.43943 1.28284 1.86024 1.42320 1.50503 1.37175 1.02168 1.18374 1.03857 0.93845 0.84721 1.21933 0.95749 0.93507 0.98630 1.22552 0.98697 1.03704 0.91446 1.23197 0.94602 0.84718 1.01713 1.67070 1.14469 1.22534 1.18917 1.17994 1.02136 0.78536 0.90987 1.91586 1.92125 1.31962 1.94169 0.94468 0.91998 0.96061 0.96318 0.91953 0.94550 0.93052 0.94086 0.93620 0.75507 0.73905 0.83245 0.79963 0.77491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 4 C -0.53 -27.26 8.01 25.60 0.21 -27.05 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 6 C 0.03 1.47 5.15 84.66 0.44 1.91 16 7 N -0.90 -47.32 9.35 21.45 0.20 -47.12 16 8 Si 0.94 41.87 29.54 68.60 2.03 43.89 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 C 0.17 6.71 4.50 86.38 0.39 7.10 16 13 N -0.72 -23.35 4.96 -478.51 -2.37 -25.72 16 14 C 0.70 22.77 8.42 179.05 1.51 24.28 16 15 O -0.61 -23.60 13.78 -4.02 -0.06 -23.66 16 16 N -0.67 -17.17 5.25 -316.65 -1.66 -18.83 16 17 C 0.09 2.33 6.35 38.25 0.24 2.57 16 18 C -0.07 -1.62 8.81 22.57 0.20 -1.42 16 19 C -0.14 -2.20 10.10 22.34 0.23 -1.98 16 20 C 0.11 1.77 11.17 84.65 0.95 2.71 16 21 N -0.52 -11.84 10.37 -196.45 -2.04 -13.87 16 22 C 0.26 6.54 8.43 84.89 0.72 7.26 16 23 F -0.12 -3.07 16.99 44.97 0.76 -2.31 16 24 H 0.04 1.31 6.86 -2.39 -0.02 1.29 16 25 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 29 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 30 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 11.49 6.18 -92.71 -0.57 10.92 16 34 H 0.42 8.48 8.69 -92.71 -0.81 7.67 16 35 H 0.15 3.94 6.26 -2.91 -0.02 3.93 16 36 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -62.35 310.90 2.61 -59.74 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.26 Total: 19.52 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.00 Total: 8.37 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -5.87 Total: -105.55 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.06 Total: -23.66 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.76 Total: -2.31 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -62.35 2.61 -59.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832028892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.828 kcal (2) G-P(sol) polarization free energy of solvation -62.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds