Wall clock time and date at job start Fri Apr 10 2020 14:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47529 * 2 1 4 4 H 1.09000 * 109.46917 * 305.97834 * 3 2 1 5 5 C 1.50698 * 109.47313 * 185.97472 * 3 2 1 6 6 H 1.07999 * 120.00405 * 245.44116 * 5 3 2 7 7 C 1.37884 * 120.00083 * 65.44241 * 5 3 2 8 8 N 1.31509 * 120.00250 * 190.88140 * 7 5 3 9 9 Si 1.86802 * 119.99691 * 10.87831 * 7 5 3 10 10 H 1.48498 * 109.47064 * 91.23639 * 9 7 5 11 11 H 1.48502 * 109.46836 * 211.23429 * 9 7 5 12 12 H 1.48501 * 109.47191 * 331.23524 * 9 7 5 13 13 N 1.46502 * 109.46934 * 65.97595 * 3 2 1 14 14 C 1.38737 * 120.00069 * 267.01276 * 13 3 2 15 15 C 1.40072 * 118.82372 * 355.06604 * 14 13 3 16 16 C 1.38805 * 119.42771 * 179.97438 * 15 14 13 17 17 C 1.43201 * 121.34257 * 179.97438 * 16 15 14 18 18 N 6.32067 * 45.19572 * 336.30282 * 2 1 3 19 19 C 1.46437 * 117.31021 * 359.97438 * 16 15 14 20 20 C 1.39877 * 121.51480 * 179.97438 * 19 16 15 21 21 C 1.36371 * 119.59098 * 180.02562 * 20 19 16 22 22 C 1.39252 * 120.78915 * 0.02562 * 21 20 19 23 23 C 1.36149 * 121.06362 * 359.97438 * 22 21 20 24 24 C 1.40594 * 119.73447 * 359.97438 * 23 22 21 25 25 N 1.31458 * 118.82854 * 175.03970 * 14 13 3 26 26 H 1.09000 * 109.46782 * 301.55885 * 1 2 3 27 27 H 1.09002 * 109.47257 * 61.55360 * 1 2 3 28 28 H 1.09003 * 109.47359 * 181.55330 * 1 2 3 29 29 H 1.09003 * 109.47171 * 239.99772 * 2 1 3 30 30 H 1.09002 * 109.47200 * 120.00300 * 2 1 3 31 31 H 0.97001 * 120.00379 * 179.97438 * 8 7 5 32 32 H 0.96996 * 119.99783 * 87.02085 * 13 3 2 33 33 H 1.07999 * 120.28262 * 359.97438 * 15 14 13 34 34 H 1.07999 * 120.20866 * 0.02562 * 20 19 16 35 35 H 1.08009 * 119.60678 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.47403 * 179.69763 * 22 21 20 37 37 H 1.08002 * 120.13754 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5920 1.9862 -0.8316 5 6 3.5398 1.4449 -0.1479 6 1 4.1614 1.8048 0.6586 7 6 4.1184 0.9878 -1.3130 8 7 5.4170 0.7875 -1.3676 9 14 3.0577 0.6529 -2.8137 10 1 2.9868 1.8761 -3.6527 11 1 3.6529 -0.4551 -3.6032 12 1 1.6902 0.2715 -2.3782 13 7 1.6727 2.0903 1.2616 14 6 0.4932 2.8152 1.3514 15 6 -0.2757 2.9999 0.1953 16 6 -1.4582 3.7227 0.2709 17 6 -2.2756 3.9370 -0.8853 18 7 -2.9241 4.1065 -1.8024 19 6 -1.8363 4.2573 1.5808 20 6 -3.0092 4.9988 1.7571 21 6 -3.3230 5.4786 2.9944 22 6 -2.4895 5.2397 4.0840 23 6 -1.3409 4.5218 3.9458 24 6 -0.9856 4.0104 2.6853 25 7 0.1368 3.3038 2.5186 26 1 -0.3633 0.5379 0.8757 27 1 -0.3634 0.4895 -0.9036 28 1 -0.3634 -1.0273 0.0279 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8241 0.4655 -2.1871 32 1 2.2542 2.0124 2.0340 33 1 0.0489 2.5835 -0.7469 34 1 -3.6623 5.1901 0.9185 35 1 -4.2284 6.0515 3.1307 36 1 -2.7561 5.6339 5.0535 37 1 -0.7056 4.3451 4.8012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:39 Heat of formation + Delta-G solvation = 92.381432 kcal Electronic energy + Delta-G solvation = -21034.302292 eV Core-core repulsion = 17969.835529 eV Total energy + Delta-G solvation = -3064.466763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62837 -38.05512 -36.87508 -35.73812 -33.24735 -32.67177 -31.71478 -30.14763 -29.30268 -27.25400 -24.85689 -23.37677 -22.76134 -22.38156 -20.42692 -19.04500 -17.82447 -17.53387 -16.75363 -15.81530 -15.37022 -14.89126 -14.77287 -14.55271 -14.06999 -13.98214 -13.63586 -13.46113 -13.30035 -13.07061 -13.00119 -12.57858 -12.28570 -12.05902 -11.88042 -11.53202 -11.41243 -11.15565 -10.98619 -10.91301 -10.22701 -10.19292 -9.70674 -9.57964 -9.29430 -9.21644 -8.73392 -8.41239 -7.16067 -6.35476 -4.37307 0.20231 1.09031 1.69290 2.46839 3.00589 3.10247 3.17063 3.23360 3.24294 3.51697 3.75037 4.16901 4.29584 4.53368 4.74584 4.84593 4.94382 5.06090 5.14256 5.29364 5.43024 5.51683 5.71809 5.72825 5.75873 5.89781 5.99864 6.08544 6.22556 6.37059 6.43116 6.43716 6.50137 6.58456 6.71367 6.88807 7.05025 7.24248 7.29614 7.44217 8.01522 8.29975 8.48520 8.69644 9.24190 10.76614 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.005107 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.985237 B = 5481.169644 C = 6204.673385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C 0.245 3.755 4 H 0.040 0.960 5 C -0.540 4.540 6 H 0.083 0.917 7 C 0.085 3.915 8 N -0.882 5.882 9 Si 0.855 3.145 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.245 1.245 13 N -0.674 5.674 14 C 0.443 3.557 15 C -0.137 4.137 16 C 0.045 3.955 17 C 0.263 3.737 18 N -0.405 5.405 19 C -0.131 4.131 20 C -0.078 4.078 21 C -0.146 4.146 22 C -0.091 4.091 23 C -0.112 4.112 24 C 0.199 3.801 25 N -0.558 5.558 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.269 0.731 32 H 0.408 0.592 33 H 0.152 0.848 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 4.936 7.281 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.181 4.181 3 C 0.141 3.859 4 H 0.057 0.943 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.120 4.120 8 N -0.518 5.518 9 Si 0.681 3.319 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.169 1.169 13 N -0.300 5.300 14 C 0.191 3.809 15 C -0.164 4.164 16 C 0.034 3.966 17 C -0.052 4.052 18 N -0.081 5.081 19 C -0.137 4.137 20 C -0.097 4.097 21 C -0.165 4.165 22 C -0.111 4.111 23 C -0.132 4.132 24 C 0.076 3.924 25 N -0.281 5.281 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.170 0.830 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.329 4.898 6.259 16.385 hybrid contribution -0.350 -0.212 -1.077 1.152 sum -14.679 4.686 5.183 16.257 Atomic orbital electron populations 1.21980 0.98066 1.00675 1.00685 1.22460 0.93316 0.99740 1.02577 1.19270 0.96760 0.88674 0.81211 0.94287 1.20938 0.88245 1.45025 1.03563 0.89924 1.24797 0.94847 0.93974 0.98397 1.69893 1.10305 1.43671 1.27901 0.87388 0.82267 0.78806 0.83462 1.20135 1.20749 1.16943 1.45228 1.18144 1.50534 1.16122 1.18345 0.87133 0.87772 0.87656 1.22142 0.93915 0.99781 1.00589 1.16926 0.92839 0.99178 0.87638 1.25304 0.93350 0.93932 0.92650 1.81238 1.09004 1.07844 1.10008 1.19206 0.98405 1.04409 0.91721 1.20693 0.94999 0.96310 0.97705 1.20710 1.00599 1.02489 0.92689 1.20802 0.94049 0.97418 0.98794 1.20681 0.97617 0.99207 0.95674 1.18301 0.88654 0.92895 0.92584 1.67207 1.18961 1.18479 1.23416 0.93224 0.93639 0.93596 0.91044 0.91832 0.92112 0.75526 0.83047 0.86440 0.86077 0.85752 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.54 37.16 0.32 -2.20 16 2 C -0.14 -2.66 4.82 -26.74 -0.13 -2.79 16 3 C 0.24 4.92 1.70 -69.08 -0.12 4.80 16 4 H 0.04 0.79 4.53 -51.93 -0.24 0.56 16 5 C -0.54 -13.30 9.21 -34.44 -0.32 -13.62 16 6 H 0.08 2.23 8.04 -52.49 -0.42 1.81 16 7 C 0.08 2.19 5.38 -17.82 -0.10 2.09 16 8 N -0.88 -24.65 13.96 55.43 0.77 -23.88 16 9 Si 0.85 18.82 25.77 -169.99 -4.38 14.44 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.25 -4.89 5.24 56.52 0.30 -4.59 16 13 N -0.67 -12.15 5.00 -55.10 -0.28 -12.42 16 14 C 0.44 7.47 6.33 -155.72 -0.99 6.48 16 15 C -0.14 -2.16 7.28 -38.68 -0.28 -2.44 16 16 C 0.04 0.65 5.93 -104.46 -0.62 0.03 16 17 C 0.26 3.82 14.36 -22.47 -0.32 3.50 16 18 N -0.41 -6.33 18.54 41.84 0.78 -5.56 16 19 C -0.13 -1.84 5.90 -104.71 -0.62 -2.46 16 20 C -0.08 -0.93 9.46 -39.64 -0.38 -1.31 16 21 C -0.15 -1.48 9.96 -39.88 -0.40 -1.88 16 22 C -0.09 -0.91 9.94 -39.96 -0.40 -1.31 16 23 C -0.11 -1.36 9.99 -39.44 -0.39 -1.76 16 24 C 0.20 2.95 6.61 -84.90 -0.56 2.38 16 25 N -0.56 -9.19 10.28 -10.31 -0.11 -9.30 16 26 H 0.05 0.79 6.08 -51.93 -0.32 0.47 16 27 H 0.04 0.71 7.32 -51.93 -0.38 0.33 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.41 4.61 -51.93 -0.24 1.18 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.41 7.25 8.77 -40.82 -0.36 6.89 16 33 H 0.15 2.38 4.96 -52.49 -0.26 2.12 16 34 H 0.12 1.29 7.35 -52.49 -0.39 0.90 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -26.99 308.82 -7.80 -34.79 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.95 Total: 7.75 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -5.29 Total: -10.47 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 1.17 Total: -51.16 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.38 Total: 14.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.99 -7.80 -34.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.173 kcal (2) G-P(sol) polarization free energy of solvation -26.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds