Wall clock time and date at job start Fri Apr 10 2020 14:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47529 * 2 1 4 4 H 1.09000 * 109.46917 * 305.97834 * 3 2 1 5 5 C 1.50698 * 109.47313 * 185.97472 * 3 2 1 6 6 H 1.07999 * 120.00405 * 245.44116 * 5 3 2 7 7 C 1.37884 * 120.00083 * 65.44241 * 5 3 2 8 8 N 1.31509 * 120.00250 * 190.88140 * 7 5 3 9 9 Si 1.86802 * 119.99691 * 10.87831 * 7 5 3 10 10 H 1.48498 * 109.47064 * 91.23639 * 9 7 5 11 11 H 1.48502 * 109.46836 * 211.23429 * 9 7 5 12 12 H 1.48501 * 109.47191 * 331.23524 * 9 7 5 13 13 N 1.46502 * 109.46934 * 65.97595 * 3 2 1 14 14 C 1.38737 * 120.00069 * 267.01276 * 13 3 2 15 15 C 1.40072 * 118.82372 * 355.06604 * 14 13 3 16 16 C 1.38805 * 119.42771 * 179.97438 * 15 14 13 17 17 C 1.43201 * 121.34257 * 179.97438 * 16 15 14 18 18 N 6.32067 * 45.19572 * 336.30282 * 2 1 3 19 19 C 1.46437 * 117.31021 * 359.97438 * 16 15 14 20 20 C 1.39877 * 121.51480 * 179.97438 * 19 16 15 21 21 C 1.36371 * 119.59098 * 180.02562 * 20 19 16 22 22 C 1.39252 * 120.78915 * 0.02562 * 21 20 19 23 23 C 1.36149 * 121.06362 * 359.97438 * 22 21 20 24 24 C 1.40594 * 119.73447 * 359.97438 * 23 22 21 25 25 N 1.31458 * 118.82854 * 175.03970 * 14 13 3 26 26 H 1.09000 * 109.46782 * 301.55885 * 1 2 3 27 27 H 1.09002 * 109.47257 * 61.55360 * 1 2 3 28 28 H 1.09003 * 109.47359 * 181.55330 * 1 2 3 29 29 H 1.09003 * 109.47171 * 239.99772 * 2 1 3 30 30 H 1.09002 * 109.47200 * 120.00300 * 2 1 3 31 31 H 0.97001 * 120.00379 * 179.97438 * 8 7 5 32 32 H 0.96996 * 119.99783 * 87.02085 * 13 3 2 33 33 H 1.07999 * 120.28262 * 359.97438 * 15 14 13 34 34 H 1.07999 * 120.20866 * 0.02562 * 20 19 16 35 35 H 1.08009 * 119.60678 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.47403 * 179.69763 * 22 21 20 37 37 H 1.08002 * 120.13754 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5920 1.9862 -0.8316 5 6 3.5398 1.4449 -0.1479 6 1 4.1614 1.8048 0.6586 7 6 4.1184 0.9878 -1.3130 8 7 5.4170 0.7875 -1.3676 9 14 3.0577 0.6529 -2.8137 10 1 2.9868 1.8761 -3.6527 11 1 3.6529 -0.4551 -3.6032 12 1 1.6902 0.2715 -2.3782 13 7 1.6727 2.0903 1.2616 14 6 0.4932 2.8152 1.3514 15 6 -0.2757 2.9999 0.1953 16 6 -1.4582 3.7227 0.2709 17 6 -2.2756 3.9370 -0.8853 18 7 -2.9241 4.1065 -1.8024 19 6 -1.8363 4.2573 1.5808 20 6 -3.0092 4.9988 1.7571 21 6 -3.3230 5.4786 2.9944 22 6 -2.4895 5.2397 4.0840 23 6 -1.3409 4.5218 3.9458 24 6 -0.9856 4.0104 2.6853 25 7 0.1368 3.3038 2.5186 26 1 -0.3633 0.5379 0.8757 27 1 -0.3634 0.4895 -0.9036 28 1 -0.3634 -1.0273 0.0279 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8241 0.4655 -2.1871 32 1 2.2542 2.0124 2.0340 33 1 0.0489 2.5835 -0.7469 34 1 -3.6623 5.1901 0.9185 35 1 -4.2284 6.0515 3.1307 36 1 -2.7561 5.6339 5.0535 37 1 -0.7056 4.3451 4.8012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:39 Heat of formation + Delta-G solvation = 77.250483 kcal Electronic energy + Delta-G solvation = -21034.958419 eV Core-core repulsion = 17969.835529 eV Total energy + Delta-G solvation = -3065.122890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74664 -39.26104 -38.04833 -37.04182 -34.48495 -34.34016 -33.10500 -31.15425 -30.53697 -28.79812 -26.01829 -24.84491 -24.00643 -23.42664 -21.84951 -20.30961 -19.20708 -18.59175 -18.23694 -17.28658 -16.72410 -16.03083 -15.96477 -15.77077 -15.31622 -15.14534 -14.89330 -14.78710 -14.64739 -14.39754 -14.21708 -13.73947 -13.67510 -13.60740 -13.11000 -12.75748 -12.67194 -12.42775 -12.41088 -12.28705 -11.80208 -11.35683 -11.32787 -11.18273 -10.71671 -10.50900 -10.42623 -9.42528 -8.39185 -8.34153 -6.39150 -0.90005 0.04079 0.69598 1.30928 1.35090 1.40598 1.46126 1.88559 2.19970 2.25416 2.31857 2.52704 3.00810 3.22358 3.45642 3.70371 3.77400 4.07995 4.14572 4.24621 4.36680 4.37221 4.47311 4.49723 4.54867 4.70725 4.77155 4.99930 5.10002 5.14052 5.16250 5.22513 5.42110 5.47923 5.49501 5.57637 5.61291 5.93056 5.98300 6.14307 6.32580 6.62986 6.82720 7.19529 7.31778 8.81488 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.005107 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.985237 B = 5481.169644 C = 6204.673385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.255 3.745 4 H 0.045 0.955 5 C -0.538 4.538 6 H 0.043 0.957 7 C 0.030 3.970 8 N -0.936 5.936 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.210 1.210 13 N -0.687 5.687 14 C 0.432 3.568 15 C -0.150 4.150 16 C 0.053 3.947 17 C 0.279 3.721 18 N -0.421 5.421 19 C -0.135 4.135 20 C -0.093 4.093 21 C -0.127 4.127 22 C -0.076 4.076 23 C -0.124 4.124 24 C 0.171 3.829 25 N -0.566 5.566 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.268 0.732 32 H 0.404 0.596 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 6.020 8.025 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C 0.150 3.850 4 H 0.063 0.937 5 C -0.576 4.576 6 H 0.061 0.939 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.735 3.265 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.132 1.132 13 N -0.315 5.315 14 C 0.181 3.819 15 C -0.177 4.177 16 C 0.042 3.958 17 C -0.037 4.037 18 N -0.097 5.097 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.146 4.146 22 C -0.096 4.096 23 C -0.143 4.143 24 C 0.049 3.951 25 N -0.289 5.289 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.240 0.760 33 H 0.168 0.832 34 H 0.146 0.854 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.264 6.012 7.040 20.476 hybrid contribution 0.730 -0.351 -1.048 1.324 sum -17.534 5.661 5.992 19.375 Atomic orbital electron populations 1.21888 0.95533 1.01981 1.01127 1.22344 0.95503 0.98208 1.01836 1.18991 0.93529 0.89997 0.82506 0.93704 1.21230 0.90769 1.43385 1.02192 0.93851 1.25614 0.95841 0.94025 1.01507 1.70041 1.12514 1.46124 1.28760 0.86473 0.82380 0.78318 0.79372 1.20298 1.21179 1.13211 1.44920 1.19239 1.52176 1.15153 1.18303 0.86961 0.88327 0.88312 1.22021 0.94554 1.01084 1.00074 1.16915 0.92301 0.98647 0.87946 1.25167 0.92858 0.93372 0.92259 1.81257 1.09642 1.08442 1.10365 1.19388 0.99099 1.04471 0.91113 1.20898 0.94495 0.96601 0.99156 1.21197 1.01184 1.00560 0.91659 1.21253 0.92465 0.95361 1.00491 1.20930 0.98834 0.99667 0.94901 1.18704 0.88578 0.93769 0.94056 1.67146 1.19860 1.18330 1.23530 0.93199 0.92851 0.91776 0.91959 0.92450 0.92259 0.76009 0.83221 0.85440 0.82549 0.81985 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.54 71.98 0.61 -3.85 16 2 C -0.14 -5.16 4.82 30.59 0.15 -5.01 16 3 C 0.25 10.34 1.70 44.24 0.08 10.42 16 4 H 0.05 1.79 4.53 -2.39 -0.01 1.78 16 5 C -0.54 -27.61 9.21 25.60 0.24 -27.38 16 6 H 0.04 2.50 8.04 -2.91 -0.02 2.48 16 7 C 0.03 1.59 5.38 84.66 0.46 2.04 16 8 N -0.94 -54.72 13.96 21.45 0.30 -54.42 16 9 Si 0.91 39.04 25.77 68.60 1.77 40.80 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.21 -7.72 5.24 99.48 0.52 -7.20 16 13 N -0.69 -25.40 5.00 -328.23 -1.64 -27.04 16 14 C 0.43 14.55 6.33 133.66 0.85 15.39 16 15 C -0.15 -4.62 7.28 22.85 0.17 -4.45 16 16 C 0.05 1.45 5.93 -19.76 -0.12 1.33 16 17 C 0.28 7.59 14.36 88.33 1.27 8.86 16 18 N -0.42 -12.37 18.54 19.00 0.35 -12.02 16 19 C -0.13 -3.52 5.90 -19.92 -0.12 -3.63 16 20 C -0.09 -1.89 9.46 22.23 0.21 -1.68 16 21 C -0.13 -1.96 9.96 22.08 0.22 -1.74 16 22 C -0.08 -1.17 9.94 22.03 0.22 -0.95 16 23 C -0.12 -2.68 9.99 22.36 0.22 -2.46 16 24 C 0.17 4.81 6.61 40.26 0.27 5.07 16 25 N -0.57 -18.50 10.28 -186.54 -1.92 -20.41 16 26 H 0.05 1.51 6.08 -2.39 -0.01 1.49 16 27 H 0.05 1.52 7.32 -2.39 -0.02 1.50 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.39 4.61 -2.39 -0.01 2.38 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.27 14.77 8.31 -92.71 -0.77 13.99 16 32 H 0.40 15.14 8.77 -92.71 -0.81 14.33 16 33 H 0.15 4.56 4.96 -2.91 -0.01 4.54 16 34 H 0.13 2.35 7.35 -2.91 -0.02 2.33 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -60.83 308.82 3.71 -57.12 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.13 Total: 24.00 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.71 Total: -8.03 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -2.91 Total: -113.90 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.77 Total: 40.80 kcal Total: -60.83 3.71 -57.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.373 kcal (2) G-P(sol) polarization free energy of solvation -60.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds