Wall clock time and date at job start Fri Apr 10 2020 14:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47124 * 2 1 4 4 C 1.52999 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46908 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99675 * 66.04815 * 5 4 3 7 7 C 1.50701 * 109.46584 * 193.95345 * 6 5 4 8 8 H 1.07998 * 120.00587 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99617 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99937 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99894 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47437 * 89.99494 * 11 9 7 13 13 H 1.48496 * 109.47020 * 210.00058 * 11 9 7 14 14 H 1.48504 * 109.47276 * 329.99825 * 11 9 7 15 15 C 1.46903 * 110.99803 * 190.00187 * 5 4 3 16 16 C 1.50699 * 109.46834 * 170.00049 * 15 5 4 17 17 C 1.38238 * 119.98782 * 270.25397 * 16 15 5 18 18 C 1.38212 * 120.01544 * 180.21353 * 17 16 15 19 19 C 1.38361 * 119.98341 * 359.50741 * 18 17 16 20 20 Cl 1.73597 * 120.00859 * 180.27890 * 19 18 17 21 21 C 1.38346 * 119.97306 * 0.25744 * 19 18 17 22 22 C 1.38210 * 119.98768 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.47201 * 299.99506 * 1 2 3 24 24 H 1.08999 * 109.47630 * 59.99966 * 1 2 3 25 25 H 1.09003 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46908 * 240.00163 * 2 1 3 27 27 H 1.09009 * 109.47265 * 120.00467 * 2 1 3 28 28 H 1.09003 * 109.47094 * 60.00277 * 3 2 1 29 29 H 1.08996 * 109.47494 * 300.00059 * 3 2 1 30 30 H 1.08997 * 109.47201 * 60.00494 * 4 3 2 31 31 H 1.08999 * 109.47630 * 300.00034 * 4 3 2 32 32 H 1.08998 * 109.47381 * 313.95083 * 6 5 4 33 33 H 1.08996 * 109.47198 * 73.95724 * 6 5 4 34 34 H 0.97002 * 119.99976 * 180.02562 * 10 9 7 35 35 H 1.08992 * 109.47144 * 50.00147 * 15 5 4 36 36 H 1.08996 * 109.46948 * 289.99652 * 15 5 4 37 37 H 1.08004 * 119.99455 * 359.97438 * 17 16 15 38 38 H 1.08002 * 120.01126 * 179.79322 * 18 17 16 39 39 H 1.08002 * 120.00348 * 180.02562 * 21 19 18 40 40 H 1.08002 * 119.99295 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7107 3.5086 1.2539 7 6 3.9142 4.9931 1.0925 8 1 4.2670 5.3908 0.1525 9 6 3.6500 5.8435 2.1452 10 7 3.2199 5.3593 3.2898 11 14 3.9015 7.6836 1.9450 12 1 2.6456 8.3043 1.4524 13 1 4.2669 8.2787 3.2556 14 1 4.9921 7.9308 0.9679 15 6 5.5084 2.8737 -0.2388 16 6 5.9332 4.3001 -0.4755 17 6 5.9338 4.8172 -1.7575 18 6 6.3275 6.1239 -1.9757 19 6 6.7113 6.9177 -0.9094 20 17 7.1990 8.5614 -1.1819 21 6 6.7058 6.4011 0.3740 22 6 6.3175 5.0924 0.5902 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9329 0.9288 -0.8909 31 1 3.9338 0.9285 0.8891 32 1 2.6672 3.3093 1.4975 33 1 4.3482 3.1397 2.0573 34 1 3.0336 5.9576 4.0302 35 1 5.7517 2.2721 -1.1145 36 1 6.0328 2.4780 0.6310 37 1 5.6303 4.1987 -2.5893 38 1 6.3312 6.5268 -2.9778 39 1 7.0049 7.0204 1.2067 40 1 6.3136 4.6890 1.5920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201714779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:17 Heat of formation + Delta-G solvation = 14.524241 kcal Electronic energy + Delta-G solvation = -20316.749476 eV Core-core repulsion = 17350.014066 eV Total energy + Delta-G solvation = -2966.735410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.11955 -37.01753 -35.88000 -34.29496 -32.64861 -30.85483 -30.33875 -28.30346 -27.26126 -24.40557 -22.97042 -22.07356 -21.47877 -20.33520 -19.71221 -16.66851 -16.41397 -15.34831 -14.96106 -14.93323 -14.41298 -14.36457 -13.69691 -13.48685 -13.04465 -12.83165 -12.75203 -12.47010 -12.37459 -12.03235 -11.87955 -11.26036 -11.15403 -11.01664 -10.90593 -10.80282 -10.72927 -10.58307 -10.46674 -10.25990 -10.12842 -9.97287 -9.58201 -9.25411 -8.51762 -8.08686 -7.55582 -7.32702 -6.11038 -4.00668 1.90212 2.13418 2.71659 3.32086 3.40786 3.50604 4.28664 4.45167 4.93084 5.22999 5.29008 5.35775 5.41262 5.44330 5.58333 5.61474 5.73363 5.83932 5.96928 6.00144 6.03012 6.10489 6.16332 6.22548 6.23703 6.29892 6.37381 6.47421 6.66928 6.72379 6.79766 6.93516 7.03398 7.20409 7.24553 7.40221 7.59712 7.78977 8.04088 8.11689 8.47631 8.99588 9.52963 10.97911 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.005742 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.366740 B = 4874.755793 C = 5896.923712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.116 4.116 4 C 0.059 3.941 5 N -0.534 5.534 6 C 0.185 3.815 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.060 3.940 10 N -0.891 5.891 11 Si 0.866 3.134 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.240 1.240 15 C 0.106 3.894 16 C -0.060 4.060 17 C -0.097 4.097 18 C -0.145 4.145 19 C -0.025 4.025 20 Cl -0.102 7.102 21 C -0.138 4.138 22 C -0.010 4.010 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.036 0.964 33 H -0.010 1.010 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -5.125 -7.248 9.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.070 4.070 5 N -0.259 5.259 6 C 0.060 3.940 7 C -0.530 4.530 8 H 0.101 0.899 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.693 3.307 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.163 1.163 15 C -0.022 4.022 16 C -0.061 4.061 17 C -0.116 4.116 18 C -0.164 4.164 19 C -0.052 4.052 20 Cl -0.074 7.074 21 C -0.158 4.158 22 C -0.029 4.029 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.512 -4.690 -7.457 9.484 hybrid contribution 0.161 0.929 0.861 1.277 sum 3.673 -3.761 -6.596 8.435 Atomic orbital electron populations 1.21754 0.96196 1.00864 1.01972 1.21493 0.95612 0.97583 1.01276 1.21616 0.95084 0.95409 1.03245 1.22004 0.95432 0.90529 0.98995 1.62211 1.10995 1.13031 1.39640 1.19890 0.96596 0.93845 0.83669 1.21688 1.41431 0.91011 0.98873 0.89926 1.24943 0.95321 0.98760 0.95251 1.69970 1.44764 1.35288 1.02949 0.86988 0.79962 0.85536 0.78220 1.21023 1.21635 1.16327 1.20815 0.89516 0.92660 0.99173 1.19516 0.97427 0.96260 0.92853 1.20660 0.99859 0.94390 0.96643 1.20632 1.04130 0.94346 0.97325 1.20715 1.04565 0.84544 0.95345 1.98303 1.90510 1.21755 1.96829 1.20678 1.04387 0.96122 0.94573 1.20735 0.91111 0.92350 0.98692 0.92679 0.92842 0.93348 0.92566 0.92509 0.91172 0.91547 0.92392 0.96123 0.94644 0.99199 0.92923 0.91841 0.95094 0.86394 0.86499 0.86529 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.56 5.93 -26.74 -0.16 -1.72 16 3 C -0.12 -1.86 5.17 -26.74 -0.14 -2.00 16 4 C 0.06 0.99 4.96 -3.82 -0.02 0.97 16 5 N -0.53 -10.64 4.56 -237.52 -1.08 -11.72 16 6 C 0.19 4.44 4.53 -4.97 -0.02 4.41 16 7 C -0.49 -12.54 5.37 -34.44 -0.19 -12.73 16 8 H 0.08 2.12 4.71 -52.49 -0.25 1.87 16 9 C 0.06 1.59 5.44 -17.82 -0.10 1.49 16 10 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 11 Si 0.87 20.75 28.39 -169.99 -4.83 15.92 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.24 -5.43 4.93 56.52 0.28 -5.15 16 15 C 0.11 1.90 5.11 -4.97 -0.03 1.87 16 16 C -0.06 -1.12 3.46 -104.62 -0.36 -1.48 16 17 C -0.10 -1.67 9.49 -39.59 -0.38 -2.05 16 18 C -0.15 -2.51 9.83 -39.55 -0.39 -2.89 16 19 C -0.03 -0.46 6.12 -39.50 -0.24 -0.71 16 20 Cl -0.10 -1.73 28.96 -51.86 -1.50 -3.23 16 21 C -0.14 -2.68 6.81 -39.55 -0.27 -2.95 16 22 C -0.01 -0.19 5.88 -39.59 -0.23 -0.43 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.07 1.30 6.31 -51.93 -0.33 0.97 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.86 7.93 -51.93 -0.41 0.44 16 31 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.04 0.92 5.98 -51.93 -0.31 0.61 16 33 H -0.01 -0.25 7.99 -51.93 -0.41 -0.67 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 35 H 0.06 0.98 7.88 -51.93 -0.41 0.57 16 36 H 0.03 0.56 7.96 -51.93 -0.41 0.14 16 37 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.12 2.20 7.90 -52.49 -0.41 1.79 16 40 H 0.13 2.66 7.68 -52.49 -0.40 2.26 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -27.15 328.09 -10.29 -37.44 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.41 Total: 0.70 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.15 Total: -19.61 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.35 Total: -36.17 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.83 Total: 15.92 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -1.50 Total: -3.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.15 -10.29 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201714779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.968 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds