Wall clock time and date at job start Fri Apr 10 2020 14:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47124 * 2 1 4 4 C 1.52999 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46908 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99675 * 66.04815 * 5 4 3 7 7 C 1.50701 * 109.46584 * 193.95345 * 6 5 4 8 8 H 1.07998 * 120.00587 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99617 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99937 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99894 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47437 * 89.99494 * 11 9 7 13 13 H 1.48496 * 109.47020 * 210.00058 * 11 9 7 14 14 H 1.48504 * 109.47276 * 329.99825 * 11 9 7 15 15 C 1.46903 * 110.99803 * 190.00187 * 5 4 3 16 16 C 1.50699 * 109.46834 * 170.00049 * 15 5 4 17 17 C 1.38238 * 119.98782 * 270.25397 * 16 15 5 18 18 C 1.38212 * 120.01544 * 180.21353 * 17 16 15 19 19 C 1.38361 * 119.98341 * 359.50741 * 18 17 16 20 20 Cl 1.73597 * 120.00859 * 180.27890 * 19 18 17 21 21 C 1.38346 * 119.97306 * 0.25744 * 19 18 17 22 22 C 1.38210 * 119.98768 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.47201 * 299.99506 * 1 2 3 24 24 H 1.08999 * 109.47630 * 59.99966 * 1 2 3 25 25 H 1.09003 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46908 * 240.00163 * 2 1 3 27 27 H 1.09009 * 109.47265 * 120.00467 * 2 1 3 28 28 H 1.09003 * 109.47094 * 60.00277 * 3 2 1 29 29 H 1.08996 * 109.47494 * 300.00059 * 3 2 1 30 30 H 1.08997 * 109.47201 * 60.00494 * 4 3 2 31 31 H 1.08999 * 109.47630 * 300.00034 * 4 3 2 32 32 H 1.08998 * 109.47381 * 313.95083 * 6 5 4 33 33 H 1.08996 * 109.47198 * 73.95724 * 6 5 4 34 34 H 0.97002 * 119.99976 * 180.02562 * 10 9 7 35 35 H 1.08992 * 109.47144 * 50.00147 * 15 5 4 36 36 H 1.08996 * 109.46948 * 289.99652 * 15 5 4 37 37 H 1.08004 * 119.99455 * 359.97438 * 17 16 15 38 38 H 1.08002 * 120.01126 * 179.79322 * 18 17 16 39 39 H 1.08002 * 120.00348 * 180.02562 * 21 19 18 40 40 H 1.08002 * 119.99295 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7107 3.5086 1.2539 7 6 3.9142 4.9931 1.0925 8 1 4.2670 5.3908 0.1525 9 6 3.6500 5.8435 2.1452 10 7 3.2199 5.3593 3.2898 11 14 3.9015 7.6836 1.9450 12 1 2.6456 8.3043 1.4524 13 1 4.2669 8.2787 3.2556 14 1 4.9921 7.9308 0.9679 15 6 5.5084 2.8737 -0.2388 16 6 5.9332 4.3001 -0.4755 17 6 5.9338 4.8172 -1.7575 18 6 6.3275 6.1239 -1.9757 19 6 6.7113 6.9177 -0.9094 20 17 7.1990 8.5614 -1.1819 21 6 6.7058 6.4011 0.3740 22 6 6.3175 5.0924 0.5902 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9329 0.9288 -0.8909 31 1 3.9338 0.9285 0.8891 32 1 2.6672 3.3093 1.4975 33 1 4.3482 3.1397 2.0573 34 1 3.0336 5.9576 4.0302 35 1 5.7517 2.2721 -1.1145 36 1 6.0328 2.4780 0.6310 37 1 5.6303 4.1987 -2.5893 38 1 6.3312 6.5268 -2.9778 39 1 7.0049 7.0204 1.2067 40 1 6.3136 4.6890 1.5920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201714779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:17 Heat of formation + Delta-G solvation = 0.832442 kcal Electronic energy + Delta-G solvation = -20317.343197 eV Core-core repulsion = 17350.014066 eV Total energy + Delta-G solvation = -2967.329131 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61065 -38.48690 -37.25422 -35.59680 -34.55969 -32.23868 -31.82116 -29.84240 -28.87936 -25.88322 -24.68187 -23.52609 -22.76929 -21.63602 -21.27006 -18.61264 -17.85854 -16.92265 -16.43700 -16.28332 -16.07824 -15.92051 -15.12881 -14.93492 -14.41383 -14.26822 -14.10489 -14.03153 -13.82375 -13.65673 -13.28955 -13.01743 -12.63349 -12.56756 -12.35695 -12.26595 -12.15857 -12.07155 -11.81387 -11.60068 -11.53314 -11.38695 -11.23503 -11.09993 -10.54046 -9.57320 -9.10391 -8.95727 -8.15511 -6.09086 0.43849 0.68123 1.30557 1.37670 1.44457 1.56389 2.43237 2.85190 3.24348 3.51044 3.99893 4.08581 4.14501 4.18619 4.20064 4.35039 4.49588 4.53521 4.62613 4.69674 4.78395 4.84975 4.87849 4.99109 5.03598 5.04961 5.13923 5.21978 5.30063 5.32144 5.34109 5.48559 5.50966 5.55084 5.57848 5.77001 5.92934 6.12810 6.17805 6.41251 6.69876 6.97601 7.48942 8.94636 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.005742 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.366740 B = 4874.755793 C = 5896.923712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.058 3.942 5 N -0.539 5.539 6 C 0.202 3.798 7 C -0.482 4.482 8 H 0.085 0.915 9 C 0.015 3.985 10 N -0.933 5.933 11 Si 0.911 3.089 12 H -0.294 1.294 13 H -0.296 1.296 14 H -0.220 1.220 15 C 0.105 3.895 16 C -0.069 4.069 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.039 4.039 20 Cl -0.088 7.088 21 C -0.145 4.145 22 C -0.026 4.026 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.015 0.985 32 H 0.009 0.991 33 H -0.040 1.040 34 H 0.257 0.743 35 H 0.100 0.900 36 H 0.024 0.976 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.114 0.886 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 -5.671 -10.263 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.149 4.149 4 C -0.070 4.070 5 N -0.263 5.263 6 C 0.076 3.924 7 C -0.520 4.520 8 H 0.103 0.897 9 C -0.183 4.183 10 N -0.574 5.574 11 Si 0.738 3.262 12 H -0.221 1.221 13 H -0.223 1.223 14 H -0.143 1.143 15 C -0.023 4.023 16 C -0.070 4.070 17 C -0.111 4.111 18 C -0.154 4.154 19 C -0.066 4.066 20 Cl -0.060 7.060 21 C -0.164 4.164 22 C -0.046 4.046 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.033 0.967 32 H 0.027 0.973 33 H -0.022 1.022 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.042 0.958 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.170 -5.240 -10.504 12.457 hybrid contribution 0.062 1.074 1.683 1.997 sum 4.231 -4.166 -8.821 10.634 Atomic orbital electron populations 1.21754 0.95462 1.02081 1.01470 1.21448 0.96253 0.95247 1.02330 1.21556 0.94759 0.97349 1.01197 1.22138 0.95753 0.88872 1.00232 1.62157 1.12582 1.14851 1.36719 1.19519 0.94332 0.93766 0.84822 1.21844 1.40063 0.91619 0.98436 0.89674 1.25515 0.95764 1.01780 0.95194 1.70078 1.47413 1.36132 1.03776 0.86286 0.79780 0.82007 0.78146 1.22061 1.22307 1.14286 1.20934 0.87988 0.92909 1.00426 1.19704 0.97405 0.96621 0.93290 1.20999 0.98625 0.94759 0.96680 1.21019 1.02048 0.94069 0.98264 1.20875 1.04836 0.85582 0.95262 1.98307 1.90373 1.20596 1.96707 1.20741 1.04438 0.95965 0.95302 1.20635 0.92711 0.93000 0.98212 0.94053 0.92550 0.91248 0.90376 0.92470 0.94765 0.91979 0.89063 0.96659 0.97320 1.02216 0.93387 0.88188 0.95786 0.83460 0.83688 0.86817 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.11 -2.74 5.93 30.59 0.18 -2.56 16 3 C -0.11 -3.50 5.17 30.59 0.16 -3.34 16 4 C 0.06 1.85 4.96 86.30 0.43 2.28 16 5 N -0.54 -21.01 4.56 -905.36 -4.13 -25.14 16 6 C 0.20 9.98 4.53 85.56 0.39 10.37 16 7 C -0.48 -24.93 5.37 25.60 0.14 -24.79 16 8 H 0.09 4.31 4.71 -2.91 -0.01 4.30 16 9 C 0.02 0.84 5.44 84.66 0.46 1.31 16 10 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 11 Si 0.91 43.32 28.39 68.60 1.95 45.27 16 12 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 13 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.22 -9.61 4.93 99.48 0.49 -9.12 16 15 C 0.10 3.55 5.11 85.56 0.44 3.99 16 16 C -0.07 -2.48 3.46 -19.86 -0.07 -2.55 16 17 C -0.09 -2.85 9.49 22.26 0.21 -2.64 16 18 C -0.14 -4.16 9.83 22.29 0.22 -3.94 16 19 C -0.04 -1.34 6.12 22.32 0.14 -1.20 16 20 Cl -0.09 -2.76 28.96 -2.72 -0.08 -2.84 16 21 C -0.15 -5.49 6.81 22.29 0.15 -5.34 16 22 C -0.03 -1.04 5.88 22.26 0.13 -0.91 16 23 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 28 H 0.03 1.31 6.31 -2.39 -0.02 1.30 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.09 2.36 7.93 -2.39 -0.02 2.34 16 31 H 0.02 0.51 8.12 -2.39 -0.02 0.49 16 32 H 0.01 0.48 5.98 -2.39 -0.01 0.47 16 33 H -0.04 -2.18 7.99 -2.39 -0.02 -2.19 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.10 2.67 7.88 -2.39 -0.02 2.65 16 36 H 0.02 0.85 7.96 -2.39 -0.02 0.83 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.11 4.26 7.90 -2.91 -0.02 4.24 16 40 H 0.10 4.51 7.68 -2.91 -0.02 4.49 16 Total: -1.00 -59.79 328.09 2.50 -57.29 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.79 Total: 12.03 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.68 Total: -31.94 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -3.85 Total: -79.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.95 Total: 45.27 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.08 Total: -2.84 kcal Total: -59.79 2.50 -57.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201714779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.126 kcal (2) G-P(sol) polarization free energy of solvation -59.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds