Wall clock time and date at job start Fri Apr 10 2020 14:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46922 * 2 1 4 4 C 1.53006 * 109.46922 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47041 * 179.70313 * 4 3 2 6 6 C 1.46903 * 111.00377 * 288.19492 * 5 4 3 7 7 C 1.50697 * 109.47392 * 160.35894 * 6 5 4 8 8 H 1.07993 * 120.00033 * 4.89110 * 7 6 5 9 9 C 1.37878 * 119.99971 * 184.89375 * 7 6 5 10 10 N 1.31515 * 119.99826 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99985 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47260 * 90.00084 * 11 9 7 13 13 H 1.48504 * 109.47258 * 210.00098 * 11 9 7 14 14 H 1.48501 * 109.47321 * 330.00220 * 11 9 7 15 15 C 1.46903 * 111.00114 * 164.23808 * 5 4 3 16 16 C 1.50700 * 109.46989 * 293.95539 * 15 5 4 17 17 C 1.38264 * 119.99592 * 270.27397 * 16 15 5 18 18 C 1.38218 * 120.02821 * 180.27357 * 17 16 15 19 19 C 1.38238 * 120.01033 * 359.45288 * 18 17 16 20 20 C 1.38329 * 119.98978 * 0.27067 * 19 18 17 21 21 Cl 1.73595 * 120.01639 * 179.97438 * 20 19 18 22 22 C 1.38192 * 119.99329 * 89.99723 * 16 15 5 23 23 H 1.08998 * 109.47092 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46933 * 299.99675 * 1 2 3 25 25 H 1.09000 * 109.47450 * 59.99482 * 1 2 3 26 26 H 1.09003 * 109.46511 * 240.00140 * 2 1 3 27 27 H 1.09000 * 109.46925 * 120.00515 * 2 1 3 28 28 H 1.09003 * 109.47413 * 60.00693 * 3 2 1 29 29 H 1.09000 * 109.47481 * 300.00499 * 3 2 1 30 30 H 1.09000 * 109.46936 * 59.70701 * 4 3 2 31 31 H 1.08991 * 109.47051 * 299.70344 * 4 3 2 32 32 H 1.09006 * 109.46719 * 280.35918 * 6 5 4 33 33 H 1.09004 * 109.47170 * 40.35560 * 6 5 4 34 34 H 0.96998 * 119.99356 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47278 * 173.95483 * 15 5 4 36 36 H 1.09004 * 109.46795 * 53.95318 * 15 5 4 37 37 H 1.07998 * 119.98358 * 0.02562 * 17 16 15 38 38 H 1.07995 * 119.99412 * 179.71994 * 18 17 16 39 39 H 1.07999 * 120.00287 * 180.25632 * 19 18 17 40 40 H 1.08004 * 120.00908 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8274 -0.0065 6 6 3.8320 3.4596 -1.3129 7 6 3.8837 4.9581 -1.1616 8 1 4.1452 5.3960 -0.2097 9 6 3.5972 5.7700 -2.2386 10 7 3.6418 7.0777 -2.1064 11 14 3.1455 5.0124 -3.8853 12 1 1.6746 4.8208 -3.9552 13 1 3.5798 5.9154 -4.9813 14 1 3.8231 3.6988 -4.0284 15 6 5.4794 2.8858 0.3663 16 6 5.6399 2.4562 1.8018 17 6 5.5678 3.3933 2.8160 18 6 5.7205 3.0009 4.1324 19 6 5.9341 1.6694 4.4367 20 6 6.0006 0.7306 3.4230 21 17 6.2694 -0.9415 3.8042 22 6 5.8533 1.1249 2.1048 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6768 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9240 -0.8865 31 1 3.9330 0.9334 0.8934 32 1 4.6044 3.1381 -2.0116 33 1 2.8534 3.1663 -1.6928 34 1 3.4406 7.6488 -2.8642 35 1 5.8441 3.9064 0.2495 36 1 6.0521 2.2193 -0.2786 37 1 5.3961 4.4329 2.5790 38 1 5.6686 3.7339 4.9238 39 1 6.0492 1.3623 5.4657 40 1 5.9055 0.3924 1.3129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203800045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:21 Heat of formation + Delta-G solvation = 4.355929 kcal Electronic energy + Delta-G solvation = -19774.330566 eV Core-core repulsion = 16807.154224 eV Total energy + Delta-G solvation = -2967.176341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.45372 -37.25143 -36.35495 -34.40892 -32.62463 -31.37467 -30.63286 -28.96994 -27.42099 -24.90939 -22.90635 -22.37429 -21.52995 -20.72496 -19.73850 -16.90104 -16.81226 -15.48197 -15.44410 -15.34988 -14.65853 -14.35649 -14.06984 -13.72806 -13.57007 -13.17542 -13.10094 -12.66241 -12.48036 -12.13927 -11.98584 -11.70551 -11.38323 -11.33365 -11.18267 -11.04413 -10.85579 -10.81878 -10.61576 -10.44120 -10.34555 -9.98619 -9.84418 -9.35174 -8.77509 -8.58658 -8.51966 -7.41804 -6.07065 -4.03733 1.30275 1.37042 2.14908 3.26326 3.34332 3.35906 3.73619 4.40145 4.71818 4.87749 4.91554 5.18376 5.19138 5.25781 5.32969 5.38957 5.43951 5.49813 5.62558 5.68119 5.87655 5.92347 5.96838 6.04088 6.05990 6.09982 6.20289 6.27181 6.32747 6.37172 6.47361 6.59493 6.71643 6.76079 6.85045 6.90498 6.95614 7.60557 7.86850 7.97907 8.63712 9.01990 9.55173 11.06149 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.005121 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.781268 B = 5466.107751 C = 6732.929287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.046 3.954 5 N -0.519 5.519 6 C 0.161 3.839 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.096 3.904 16 C -0.049 4.049 17 C -0.089 4.089 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.037 4.037 21 Cl -0.084 7.084 22 C -0.110 4.110 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.067 0.933 32 H -0.012 1.012 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.099 0.901 36 H 0.032 0.968 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 -13.837 9.818 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.082 4.082 5 N -0.243 5.243 6 C 0.035 3.965 7 C -0.544 4.544 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.032 4.032 16 C -0.050 4.050 17 C -0.108 4.108 18 C -0.128 4.128 19 C -0.140 4.140 20 C -0.063 4.063 21 Cl -0.056 7.056 22 C -0.129 4.129 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.006 0.994 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.074 -13.540 10.071 17.002 hybrid contribution 0.146 -0.908 -1.533 1.787 sum 2.220 -14.448 8.539 16.929 Atomic orbital electron populations 1.21754 0.96116 1.00927 1.01962 1.21501 0.95672 0.97523 1.01369 1.21582 0.95063 0.95425 1.03102 1.22226 0.95642 0.90713 0.99606 1.61973 1.14815 1.14600 1.32909 1.20239 0.95458 0.96034 0.84722 1.21016 1.46519 0.88164 0.98740 0.90146 1.24880 0.95200 0.94695 0.98455 1.69887 1.49749 1.02940 1.31324 0.86920 0.79257 0.79497 0.84431 1.20145 1.21207 1.19364 1.21038 0.90339 1.02445 0.89351 1.20006 0.96177 0.91963 0.96820 1.21288 0.96960 1.00671 0.91862 1.21117 0.99716 0.95054 0.96923 1.20950 1.01994 0.92659 0.98373 1.20829 1.05994 0.84787 0.94722 1.98346 1.95056 1.17462 1.94701 1.20971 1.01155 0.96321 0.94445 0.93285 0.92733 0.92771 0.92565 0.92408 0.91317 0.91652 0.96065 0.91428 0.99412 0.95342 0.92686 0.88281 0.95005 0.84741 0.85295 0.85532 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.76 16 3 C -0.11 -1.84 5.28 -26.73 -0.14 -1.98 16 4 C 0.05 0.79 4.80 -3.82 -0.02 0.77 16 5 N -0.52 -10.36 4.37 -237.51 -1.04 -11.40 16 6 C 0.16 3.77 3.66 -4.98 -0.02 3.75 16 7 C -0.51 -13.88 9.17 -34.44 -0.32 -14.20 16 8 H 0.08 2.39 7.89 -52.49 -0.41 1.97 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 11 Si 0.87 21.14 27.37 -169.99 -4.65 16.49 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.30 6.69 56.52 0.38 -5.93 16 15 C 0.10 1.72 4.94 -4.97 -0.02 1.69 16 16 C -0.05 -0.75 4.93 -104.63 -0.52 -1.27 16 17 C -0.09 -1.30 9.70 -39.58 -0.38 -1.68 16 18 C -0.11 -1.35 10.05 -39.59 -0.40 -1.74 16 19 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 20 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 21 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 22 C -0.11 -1.53 7.63 -39.55 -0.30 -1.83 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.16 6.52 -51.93 -0.34 0.82 16 30 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 31 H 0.07 1.06 5.14 -51.93 -0.27 0.79 16 32 H -0.01 -0.28 7.40 -51.93 -0.38 -0.66 16 33 H 0.03 0.67 5.39 -51.93 -0.28 0.39 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.94 7.26 -51.93 -0.38 1.57 16 36 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 37 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.68 7.73 -52.48 -0.41 1.27 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -28.92 337.98 -10.24 -39.16 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.27 Total: -0.25 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.64 Total: -20.35 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.27 Total: -37.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.65 Total: 16.49 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.92 -10.24 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203800045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.514 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds