Wall clock time and date at job start Fri Apr 10 2020 14:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 N 1.46498 * 109.46872 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00259 * 263.33402 * 4 3 2 6 6 H 1.07992 * 120.00440 * 144.13730 * 5 4 3 7 7 C 1.38817 * 119.99527 * 324.12541 * 5 4 3 8 8 N 1.31621 * 119.99513 * 159.49754 * 7 5 4 9 9 Si 1.86795 * 120.00376 * 339.50362 * 7 5 4 10 10 H 1.48505 * 109.46993 * 95.54723 * 9 7 5 11 11 H 1.48496 * 109.47331 * 215.55211 * 9 7 5 12 12 H 1.48501 * 109.47201 * 335.55304 * 9 7 5 13 13 C 1.46509 * 119.99909 * 83.32961 * 4 3 2 14 14 C 1.50700 * 109.46789 * 90.17834 * 13 4 3 15 15 C 1.38373 * 120.00958 * 270.64082 * 14 13 4 16 16 Cl 1.73594 * 120.01157 * 359.96101 * 15 14 13 17 17 C 1.38328 * 119.97303 * 179.97438 * 15 14 13 18 18 C 1.38237 * 119.98758 * 0.02562 * 17 15 14 19 19 C 1.38223 * 120.01196 * 359.97438 * 18 17 15 20 20 C 1.38194 * 120.00214 * 90.89853 * 14 13 4 21 21 C 1.50702 * 119.99691 * 0.02562 * 20 14 13 22 22 C 1.53006 * 109.47080 * 84.04844 * 21 20 14 23 23 H 1.09000 * 109.47540 * 59.99911 * 1 2 3 24 24 H 1.09000 * 109.47278 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46822 * 299.99756 * 1 2 3 26 26 H 1.08997 * 109.46560 * 240.00158 * 2 1 3 27 27 H 1.09000 * 109.46824 * 120.00301 * 2 1 3 28 28 H 1.09000 * 109.46744 * 60.00224 * 3 2 1 29 29 H 1.09000 * 109.47060 * 300.00383 * 3 2 1 30 30 H 0.96999 * 120.00111 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46769 * 330.18572 * 13 4 3 32 32 H 1.08997 * 109.47322 * 210.18023 * 13 4 3 33 33 H 1.08003 * 120.00909 * 180.02562 * 17 15 14 34 34 H 1.08000 * 119.99434 * 179.97438 * 18 17 15 35 35 H 1.08002 * 119.98371 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.47043 * 204.04834 * 21 20 14 37 37 H 1.09001 * 109.47022 * 324.04869 * 21 20 14 38 38 H 1.09002 * 109.46930 * 65.63248 * 22 21 20 39 39 H 1.08999 * 109.47146 * 185.63857 * 22 21 20 40 40 H 1.09004 * 109.46862 * 305.63600 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5800 1.1770 6 1 5.1167 1.0461 1.3282 7 6 3.6940 2.4059 2.1763 8 7 4.0935 2.2467 3.4203 9 14 2.4594 3.7431 1.7556 10 1 1.0831 3.2392 1.9954 11 1 2.7071 4.9321 2.6100 12 1 2.6063 4.1208 0.3270 13 6 4.2370 1.2953 -1.2612 14 6 4.4917 2.6563 -1.8559 15 6 3.5645 3.2213 -2.7137 16 17 2.1080 2.3621 -3.1059 17 6 3.7988 4.4709 -3.2588 18 6 4.9592 5.1542 -2.9468 19 6 5.8851 4.5893 -2.0899 20 6 5.6539 3.3381 -1.5489 21 6 6.6668 2.7202 -0.6198 22 6 7.5772 1.7789 -1.4110 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.7471 2.8240 4.1185 31 1 3.6461 0.6996 -1.9569 32 1 5.1880 0.7972 -1.0730 33 1 3.0753 4.9126 -3.9281 34 1 5.1425 6.1297 -3.3726 35 1 6.7913 5.1238 -1.8461 36 1 7.2670 3.5065 -0.1620 37 1 6.1506 2.1577 0.1582 38 1 8.1675 2.3569 -2.1221 39 1 8.2440 1.2566 -0.7250 40 1 6.9686 1.0526 -1.9497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000475569161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:36 Heat of formation + Delta-G solvation = 10.828918 kcal Electronic energy + Delta-G solvation = -21081.282446 eV Core-core repulsion = 18114.386795 eV Total energy + Delta-G solvation = -2966.895651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72258 -38.06345 -37.45279 -35.08053 -34.28139 -33.64307 -31.69922 -30.25599 -27.73232 -27.38798 -24.69972 -23.89887 -22.72901 -22.23418 -21.12950 -18.80222 -17.68710 -17.22480 -16.79506 -16.35341 -16.16672 -15.50455 -15.01742 -14.92028 -14.65703 -14.43746 -14.24408 -14.13291 -13.84252 -13.49052 -13.25957 -13.05199 -12.89087 -12.71748 -12.49912 -12.39155 -12.30226 -12.09656 -11.90261 -11.83796 -11.61152 -11.45200 -11.36462 -11.07632 -10.64667 -9.52724 -9.48627 -8.75566 -8.16840 -5.50541 0.31765 0.44126 1.24105 1.24977 1.36083 1.47167 2.40975 2.72163 3.09861 3.51595 3.86624 3.97981 4.11881 4.17001 4.25221 4.33539 4.37070 4.55786 4.57416 4.63421 4.68363 4.71858 4.75846 4.84342 4.87198 4.96784 5.10808 5.15014 5.16386 5.20003 5.30965 5.36808 5.40601 5.50495 5.53810 5.56949 5.81455 5.97830 6.04202 6.19637 6.98844 7.65383 8.08975 9.02077 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.009776 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.716382 B = 2863.388270 C = 3700.513902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.122 3.878 4 N -0.602 5.602 5 C -0.226 4.226 6 H 0.061 0.939 7 C -0.010 4.010 8 N -0.945 5.945 9 Si 0.924 3.076 10 H -0.285 1.285 11 H -0.316 1.316 12 H -0.265 1.265 13 C 0.177 3.823 14 C -0.097 4.097 15 C -0.046 4.046 16 Cl -0.074 7.074 17 C -0.130 4.130 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.063 4.063 21 C -0.104 4.104 22 C -0.132 4.132 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.259 0.741 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 2.220 -15.155 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.002 4.002 4 N -0.323 5.323 5 C -0.356 4.356 6 H 0.078 0.922 7 C -0.207 4.207 8 N -0.590 5.590 9 Si 0.755 3.245 10 H -0.213 1.213 11 H -0.246 1.246 12 H -0.190 1.190 13 C 0.052 3.948 14 C -0.101 4.101 15 C -0.074 4.074 16 Cl -0.045 7.045 17 C -0.149 4.149 18 C -0.132 4.132 19 C -0.145 4.145 20 C -0.064 4.064 21 C -0.141 4.141 22 C -0.190 4.190 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.202 2.158 -15.034 15.190 hybrid contribution -0.822 0.786 0.573 1.273 sum -0.620 2.944 -14.462 14.771 Atomic orbital electron populations 1.21694 0.94972 1.02235 1.01249 1.21893 0.95939 0.98074 1.01188 1.21504 0.83478 0.96048 0.99167 1.44270 1.00906 1.84887 1.02197 1.18633 1.06741 1.19610 0.90633 0.92191 1.25791 1.00046 0.99375 0.95438 1.69927 1.48297 1.40528 1.00288 0.86161 0.79684 0.80593 0.78030 1.21332 1.24582 1.18959 1.20102 0.97066 0.90863 0.86729 1.20706 0.93302 1.00719 0.95373 1.20982 0.89391 0.95327 1.01651 1.98301 1.36277 1.77355 1.92594 1.21236 0.99318 0.92871 1.01428 1.21343 0.93002 1.00744 0.98107 1.21441 1.00701 0.94736 0.97578 1.19924 0.94724 0.94848 0.96886 1.20810 0.95908 0.99858 0.97525 1.21658 0.98657 0.98764 0.99872 0.92229 0.91091 0.94114 0.91694 0.93919 0.95599 0.91940 0.93172 0.91461 0.91440 0.83611 0.82323 0.83872 0.91407 0.90278 0.91617 0.92034 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.91 71.98 0.71 -3.69 16 2 C -0.13 -4.90 6.25 30.60 0.19 -4.70 16 3 C 0.12 5.30 4.23 86.38 0.37 5.66 16 4 N -0.60 -27.48 2.11 -706.33 -1.49 -28.97 16 5 C -0.23 -12.15 8.19 84.03 0.69 -11.46 16 6 H 0.06 3.48 7.19 -2.91 -0.02 3.46 16 7 C -0.01 -0.59 5.31 84.86 0.45 -0.14 16 8 N -0.95 -58.19 13.97 21.65 0.30 -57.89 16 9 Si 0.92 47.88 24.82 68.60 1.70 49.58 16 10 H -0.29 -14.46 6.69 99.48 0.67 -13.80 16 11 H -0.32 -16.78 7.11 99.48 0.71 -16.08 16 12 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 13 C 0.18 6.86 4.97 85.63 0.43 7.29 16 14 C -0.10 -3.58 5.47 -19.84 -0.11 -3.69 16 15 C -0.05 -1.56 6.31 22.32 0.14 -1.42 16 16 Cl -0.07 -2.31 24.57 -2.72 -0.07 -2.38 16 17 C -0.13 -3.69 9.83 22.29 0.22 -3.47 16 18 C -0.11 -2.93 10.05 22.27 0.22 -2.70 16 19 C -0.13 -3.65 9.68 22.27 0.22 -3.44 16 20 C -0.06 -2.17 5.13 -19.87 -0.10 -2.27 16 21 C -0.10 -3.55 5.37 29.85 0.16 -3.39 16 22 C -0.13 -3.61 9.62 71.98 0.69 -2.91 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.03 1.27 3.26 -2.39 -0.01 1.26 16 29 H 0.06 2.53 5.06 -2.39 -0.01 2.52 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 31 H 0.07 2.40 6.80 -2.39 -0.02 2.38 16 32 H 0.07 2.58 5.29 -2.39 -0.01 2.57 16 33 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.07 2.19 8.04 -2.39 -0.02 2.17 16 37 H 0.08 3.35 4.06 -2.39 -0.01 3.35 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.43 6.97 -2.38 -0.02 1.41 16 Total: -1.00 -63.41 322.79 5.71 -57.69 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.99 Total: 12.30 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 4.28 Total: -30.34 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.19 Total: -86.85 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.70 Total: 49.58 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.38 kcal Total: -63.41 5.71 -57.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475569161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.523 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds