Wall clock time and date at job start Fri Apr 10 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47303 * 33.10115 * 3 2 1 5 5 C 1.36941 * 120.00376 * 264.09383 * 4 3 2 6 6 H 1.07995 * 120.00458 * 201.62131 * 5 4 3 7 7 C 1.38815 * 119.99248 * 21.62132 * 5 4 3 8 8 N 1.31616 * 120.00493 * 11.00744 * 7 5 4 9 9 Si 1.86799 * 119.99413 * 191.00518 * 7 5 4 10 10 H 1.48502 * 109.47219 * 84.97924 * 9 7 5 11 11 H 1.48507 * 109.47137 * 204.97867 * 9 7 5 12 12 H 1.48501 * 109.47430 * 324.97771 * 9 7 5 13 13 C 1.46505 * 120.00082 * 84.09681 * 4 3 2 14 14 C 1.50705 * 109.47018 * 269.99936 * 13 4 3 15 15 C 1.39922 * 125.87605 * 94.97221 * 14 13 4 16 16 C 1.35317 * 107.93153 * 179.77204 * 15 14 13 17 17 N 1.35226 * 107.71099 * 0.37061 * 16 15 14 18 18 C 1.40184 * 126.05524 * 179.89924 * 17 16 15 19 19 C 1.38839 * 120.06972 * 179.71070 * 18 17 16 20 20 C 1.38117 * 119.93631 * 179.97438 * 19 18 17 21 21 C 1.38287 * 120.06524 * 0.02562 * 20 19 18 22 22 C 1.38280 * 120.13125 * 0.02562 * 21 20 19 23 23 C 1.38117 * 120.06925 * 359.97438 * 22 21 20 24 24 N 1.30865 * 125.87998 * 274.97548 * 14 13 4 25 25 H 4.40638 * 5.51296 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47017 * 273.09889 * 3 2 1 27 27 H 1.09004 * 109.46972 * 153.10055 * 3 2 1 28 28 H 0.96996 * 120.00138 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47391 * 150.00012 * 13 4 3 30 30 H 1.08997 * 109.47211 * 29.99519 * 13 4 3 31 31 H 1.08005 * 126.03699 * 0.02562 * 15 14 13 32 32 H 1.07998 * 126.14574 * 180.22411 * 16 15 14 33 33 H 1.07997 * 120.03220 * 0.02562 * 19 18 17 34 34 H 1.07997 * 119.96943 * 179.72861 * 20 19 18 35 35 H 1.07994 * 119.93370 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.96702 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.03624 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1561 -0.7543 5 6 3.4787 -2.3069 -0.0965 6 1 4.1464 -3.0164 -0.5624 7 6 2.9689 -2.5614 1.1694 8 7 1.9953 -1.8168 1.6487 9 14 3.6648 -3.9609 2.1923 10 1 4.8661 -3.4879 2.9262 11 1 2.6403 -4.4208 3.1640 12 1 4.0413 -5.0867 1.3001 13 6 3.2560 -1.0818 -2.2124 14 6 1.9653 -1.5315 -2.8472 15 6 0.9200 -0.6975 -3.2593 16 6 -0.0543 -1.4778 -3.7817 17 7 0.3573 -2.7630 -3.6952 18 6 -0.3592 -3.8894 -4.1231 19 6 0.1872 -5.1575 -3.9789 20 6 -0.5213 -6.2655 -4.4010 21 6 -1.7737 -6.1125 -4.9672 22 6 -2.3200 -4.8506 -5.1132 23 6 -1.6163 -3.7390 -4.6930 24 7 1.6291 -2.7690 -3.1080 25 1 -1.0498 -0.0003 0.0000 26 1 3.0093 -0.0547 1.0262 27 1 3.0089 0.9173 -0.4650 28 1 1.6394 -1.9944 2.5334 29 1 4.0683 -1.7291 -2.5430 30 1 3.4673 -0.0541 -2.5076 31 1 0.8968 0.3793 -3.1787 32 1 -0.9931 -1.1358 -4.1917 33 1 1.1650 -5.2777 -3.5364 34 1 -0.0950 -7.2518 -4.2930 35 1 -2.3256 -6.9802 -5.2969 36 1 -3.2985 -4.7343 -5.5554 37 1 -2.0437 -2.7537 -4.8069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491803663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:50 Heat of formation + Delta-G solvation = 181.593149 kcal Electronic energy + Delta-G solvation = -21084.640222 eV Core-core repulsion = 18024.041970 eV Total energy + Delta-G solvation = -3060.598253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32585 -39.87599 -37.90526 -34.68918 -33.39878 -32.93962 -32.16684 -30.92252 -30.14319 -28.08280 -27.65270 -24.32802 -23.99296 -22.98900 -21.50262 -20.46420 -19.33856 -19.10903 -18.24544 -17.10399 -16.95467 -16.16587 -15.93935 -15.80645 -15.51857 -15.27674 -14.99427 -14.56038 -14.31053 -14.23121 -13.71271 -13.55471 -13.21882 -13.19000 -12.74263 -12.61810 -12.50088 -12.24560 -12.13050 -11.96024 -11.33984 -11.11475 -10.88322 -10.58902 -10.19958 -10.02262 -9.94748 -8.96883 -8.85172 -7.82507 -5.31299 -0.06677 0.33598 1.33334 1.43851 1.44390 1.51602 1.61348 1.92532 2.45908 2.56239 2.69405 2.82965 3.31729 3.57912 3.83442 3.93111 3.99824 4.01495 4.17813 4.22864 4.34313 4.43773 4.52324 4.66319 4.83169 4.86921 4.94677 5.00806 5.05197 5.11949 5.37884 5.41004 5.43098 5.50231 5.63868 5.73473 5.80412 5.89361 6.30828 6.38805 6.89996 7.12514 7.47034 7.79952 8.21299 9.16859 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.005625 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.532190 B = 4976.423474 C = 5833.258648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.107 4.107 3 C 0.269 3.731 4 N -0.583 5.583 5 C -0.254 4.254 6 H 0.068 0.932 7 C -0.045 4.045 8 N -0.916 5.916 9 Si 0.962 3.038 10 H -0.275 1.275 11 H -0.301 1.301 12 H -0.281 1.281 13 C 0.211 3.789 14 C 0.070 3.930 15 C -0.251 4.251 16 C 0.041 3.959 17 N -0.342 5.342 18 C 0.140 3.860 19 C -0.155 4.155 20 C -0.098 4.098 21 C -0.133 4.133 22 C -0.086 4.086 23 C -0.152 4.152 24 N -0.325 5.325 25 H 0.208 0.792 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.245 0.755 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.208 0.792 33 H 0.105 0.895 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 -1.398 -14.485 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.110 4.110 3 C 0.144 3.856 4 N -0.302 5.302 5 C -0.385 4.385 6 H 0.085 0.915 7 C -0.241 4.241 8 N -0.561 5.561 9 Si 0.791 3.209 10 H -0.202 1.202 11 H -0.228 1.228 12 H -0.207 1.207 13 C 0.083 3.917 14 C -0.101 4.101 15 C -0.279 4.279 16 C -0.100 4.100 17 N -0.118 5.118 18 C 0.047 3.953 19 C -0.176 4.176 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.173 4.173 24 N -0.146 5.146 25 H 0.224 0.776 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.178 0.822 32 H 0.225 0.775 33 H 0.123 0.877 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.887 -2.667 -14.278 16.528 hybrid contribution -0.219 -0.086 1.138 1.162 sum -8.106 -2.753 -13.140 15.682 Atomic orbital electron populations 1.24646 0.96057 1.05985 1.06115 1.24470 0.95798 0.95313 0.95399 1.17910 0.82798 0.87814 0.97067 1.44376 1.73786 1.11753 1.00327 1.19405 1.21144 0.99289 0.98619 0.91464 1.25664 0.97256 1.00646 1.00522 1.70182 1.26786 1.41751 1.17415 0.85370 0.77348 0.79720 0.78446 1.20151 1.22830 1.20691 1.19750 0.89305 1.00362 0.82270 1.24149 1.00629 0.90218 0.95091 1.21626 0.95097 1.01235 1.09950 1.22999 1.01578 0.83180 1.02238 1.46139 1.13935 1.05008 1.46680 1.18109 0.92698 0.85172 0.99308 1.20971 1.01266 0.91892 1.03449 1.21331 0.95312 0.98041 0.96973 1.21608 0.95168 0.98890 0.99459 1.21418 1.00544 0.91024 0.97482 1.21131 0.92078 1.02060 1.01992 1.77394 0.95469 1.22550 1.19173 0.77552 0.90641 0.91119 0.94560 0.92139 0.88313 0.82248 0.77496 0.87716 0.83533 0.82082 0.81419 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.28 19.25 74.32 1.43 -12.85 16 2 C -0.11 -5.21 10.86 31.12 0.34 -4.88 16 3 C 0.27 12.69 5.44 84.57 0.46 13.15 16 4 N -0.58 -28.77 2.49 -716.92 -1.78 -30.55 16 5 C -0.25 -14.09 9.69 84.03 0.81 -13.28 16 6 H 0.07 3.75 7.84 -2.91 -0.02 3.73 16 7 C -0.05 -2.55 5.09 84.86 0.43 -2.12 16 8 N -0.92 -53.88 9.04 21.65 0.20 -53.68 16 9 Si 0.96 46.68 29.57 68.60 2.03 48.71 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 C 0.21 8.81 6.25 85.63 0.54 9.35 16 14 C 0.07 2.99 6.48 43.11 0.28 3.27 16 15 C -0.25 -9.11 10.43 22.00 0.23 -8.88 16 16 C 0.04 1.35 10.80 83.50 0.90 2.26 16 17 N -0.34 -13.28 3.80 -187.76 -0.71 -13.99 16 18 C 0.14 4.67 6.69 38.09 0.25 4.93 16 19 C -0.16 -5.18 9.66 22.38 0.22 -4.97 16 20 C -0.10 -2.37 10.04 22.25 0.22 -2.14 16 21 C -0.13 -2.43 10.04 22.29 0.22 -2.20 16 22 C -0.09 -1.55 10.04 22.25 0.22 -1.33 16 23 C -0.15 -3.65 9.46 22.39 0.21 -3.44 16 24 N -0.33 -15.05 11.87 -47.34 -0.56 -15.61 16 25 H 0.21 8.15 7.80 -4.43 -0.03 8.11 16 26 H 0.08 3.97 6.41 -2.39 -0.02 3.96 16 27 H 0.07 2.76 7.98 -2.38 -0.02 2.74 16 28 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.06 2.52 8.03 -2.39 -0.02 2.50 16 30 H 0.10 3.36 7.95 -2.39 -0.02 3.34 16 31 H 0.16 5.04 8.06 -2.91 -0.02 5.02 16 32 H 0.21 4.67 7.04 -2.91 -0.02 4.65 16 33 H 0.10 4.08 7.70 -2.91 -0.02 4.05 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.15 2.78 6.74 -2.91 -0.02 2.76 16 Total: -1.00 -73.77 326.35 7.00 -66.77 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.06 Total: 21.49 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 6.78 Total: -23.13 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -2.86 Total: -113.83 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.77 7.00 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491803663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.358 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds