Wall clock time and date at job start Fri Apr 10 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 N 1.46494 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00430 * 275.81417 * 4 3 2 6 6 H 1.08001 * 119.99984 * 39.64100 * 5 4 3 7 7 C 1.38813 * 119.99856 * 219.65045 * 5 4 3 8 8 N 1.31619 * 119.99960 * 18.02158 * 7 5 4 9 9 Si 1.86801 * 119.99695 * 198.02759 * 7 5 4 10 10 H 1.48500 * 109.47211 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47071 * 120.00180 * 9 7 5 12 12 H 1.48500 * 109.47040 * 239.99808 * 9 7 5 13 13 C 1.46505 * 119.99765 * 95.80367 * 4 3 2 14 14 C 1.50693 * 109.47547 * 270.00413 * 13 4 3 15 15 C 1.38247 * 119.98765 * 269.72576 * 14 13 4 16 16 C 1.50699 * 119.99002 * 0.02562 * 15 14 13 17 17 C 1.38217 * 120.01086 * 179.72404 * 15 14 13 18 18 C 1.38350 * 119.98771 * 0.55054 * 17 15 14 19 19 Cl 1.73601 * 120.01381 * 179.74700 * 18 17 15 20 20 C 1.38354 * 119.97348 * 359.72214 * 18 17 15 21 21 C 1.38211 * 119.98575 * 0.02562 * 20 18 17 22 22 C 1.50706 * 119.99173 * 180.02562 * 21 20 18 23 23 H 1.08999 * 109.46834 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47108 * 299.99808 * 1 2 3 25 25 H 1.08996 * 109.47342 * 59.99958 * 1 2 3 26 26 H 1.08999 * 109.47108 * 240.00192 * 2 1 3 27 27 H 1.09003 * 109.47034 * 119.99803 * 2 1 3 28 28 H 1.08999 * 109.47025 * 60.00141 * 3 2 1 29 29 H 1.08996 * 109.47099 * 300.00191 * 3 2 1 30 30 H 0.97006 * 120.00059 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46912 * 30.00647 * 13 4 3 32 32 H 1.09004 * 109.46658 * 149.99868 * 13 4 3 33 33 H 1.08995 * 109.47155 * 89.99770 * 16 15 14 34 34 H 1.08999 * 109.47089 * 209.99700 * 16 15 14 35 35 H 1.08998 * 109.47220 * 329.99896 * 16 15 14 36 36 H 1.08002 * 120.00063 * 180.27328 * 17 15 14 37 37 H 1.07999 * 120.00893 * 180.02562 * 20 18 17 38 38 H 1.08997 * 109.46931 * 269.97518 * 22 21 20 39 39 H 1.08994 * 109.47203 * 29.97359 * 22 21 20 40 40 H 1.08997 * 109.47106 * 149.97617 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3226 1.1807 6 1 3.8353 0.6452 1.9437 7 6 5.3378 2.0719 1.3962 8 7 5.5796 3.1332 0.6563 9 14 6.5400 1.5737 2.7363 10 1 6.0410 0.3539 3.4206 11 1 7.8674 1.2947 2.1317 12 1 6.6673 2.6768 3.7222 13 6 4.2380 1.5707 -1.2614 14 6 4.4894 0.2012 -1.8377 15 6 5.6441 -0.4849 -1.5104 16 6 6.6507 0.1368 -0.5769 17 6 5.8725 -1.7434 -2.0342 18 6 4.9506 -2.3118 -2.8951 19 17 5.2400 -3.8897 -3.5586 20 6 3.7979 -1.6223 -3.2268 21 6 3.5681 -0.3661 -2.6983 22 6 2.3122 0.3848 -3.0590 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 6.3820 3.6570 0.8071 31 1 3.6491 2.1587 -1.9655 32 1 5.1903 2.0688 -1.0794 33 1 6.4128 -0.1395 0.4502 34 1 7.6489 -0.2221 -0.8278 35 1 6.6185 1.2216 -0.6781 36 1 6.7725 -2.2810 -1.7748 37 1 3.0777 -2.0656 -3.8985 38 1 2.4938 0.9915 -3.9461 39 1 1.5103 -0.3248 -3.2620 40 1 2.0244 1.0309 -2.2297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000511522900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:34 Heat of formation + Delta-G solvation = 22.183428 kcal Electronic energy + Delta-G solvation = -21062.793980 eV Core-core repulsion = 18096.390697 eV Total energy + Delta-G solvation = -2966.403283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.40761 -36.55580 -35.76284 -33.66859 -32.55728 -31.62739 -30.39716 -27.39502 -26.37643 -25.47381 -25.16809 -22.32920 -20.47540 -20.26050 -19.79746 -16.87967 -15.88441 -15.64198 -14.89738 -14.71621 -14.22523 -13.85512 -13.51028 -13.14113 -12.99005 -12.54606 -12.52945 -12.47541 -12.20650 -12.10858 -12.00437 -11.59936 -11.30736 -11.06982 -10.86746 -10.74816 -10.65521 -10.47671 -10.45192 -10.29867 -10.27838 -10.00923 -9.72740 -9.65363 -8.53662 -8.09394 -7.82093 -6.60770 -5.87113 -3.47095 1.75727 1.83392 2.50528 3.26907 3.37900 3.39756 4.13321 4.40891 5.22049 5.24628 5.32115 5.48657 5.56971 5.66948 5.72558 5.76773 5.85998 5.94133 6.01187 6.09422 6.10220 6.18330 6.27109 6.43334 6.45607 6.47930 6.55063 6.58016 6.62521 6.68445 6.74806 6.95710 6.99010 7.09836 7.18911 7.34413 7.45729 7.69626 7.76443 8.46349 9.11142 9.71347 10.31592 11.12100 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.007624 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.762127 B = 3671.590080 C = 4885.419491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C 0.147 3.853 4 N -0.572 5.572 5 C -0.251 4.251 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.886 5.886 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.290 1.290 13 C 0.168 3.832 14 C -0.067 4.067 15 C -0.047 4.047 16 C -0.116 4.116 17 C -0.126 4.126 18 C -0.043 4.043 19 Cl -0.098 7.098 20 C -0.127 4.127 21 C -0.072 4.072 22 C -0.125 4.125 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.256 0.744 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 -6.333 -6.756 9.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.021 3.979 4 N -0.291 5.291 5 C -0.381 4.381 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.529 5.529 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.217 1.217 13 C 0.042 3.958 14 C -0.071 4.071 15 C -0.048 4.048 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.070 4.070 19 Cl -0.069 7.069 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.181 4.181 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.142 -6.291 -6.770 9.761 hybrid contribution 0.729 -0.763 0.635 1.232 sum -2.413 -7.055 -6.134 9.655 Atomic orbital electron populations 1.21724 0.97475 1.00330 1.00925 1.22283 0.93676 1.01103 1.02144 1.21002 0.85198 0.92997 0.98692 1.43634 0.99181 1.84414 1.01861 1.19000 1.07168 1.17784 0.94162 0.92469 1.25150 1.00706 0.94579 0.97435 1.69956 1.26791 1.14875 1.41266 0.86618 0.81803 0.78443 0.82088 1.19939 1.20807 1.21660 1.20150 1.00934 0.88551 0.86128 1.21123 0.91840 1.00751 0.93363 1.19752 0.95912 0.92774 0.96345 1.21022 0.94623 1.03105 0.98483 1.20827 0.99224 0.95846 0.98591 1.20642 0.97846 0.87090 1.01388 1.98311 1.96238 1.27072 1.85286 1.20709 0.96474 0.95184 1.02180 1.19649 0.96677 0.93742 0.97239 1.21108 0.94186 1.00170 1.02637 0.93913 0.93323 0.93463 0.91889 0.92675 0.93663 0.94401 0.93401 0.94516 0.87214 0.90430 0.93739 0.88881 0.86154 0.86303 0.91905 0.92389 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.15 -2.69 5.78 -26.73 -0.15 -2.85 16 3 C 0.15 2.90 4.97 -4.04 -0.02 2.88 16 4 N -0.57 -13.02 2.41 -174.61 -0.42 -13.44 16 5 C -0.25 -6.32 8.67 -15.06 -0.13 -6.45 16 6 H 0.06 1.50 7.89 -52.49 -0.41 1.08 16 7 C 0.02 0.54 3.06 -17.43 -0.05 0.48 16 8 N -0.89 -23.17 11.04 55.49 0.61 -22.56 16 9 Si 0.88 20.19 27.64 -169.99 -4.70 15.49 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.17 3.64 4.57 -5.19 -0.02 3.61 16 14 C -0.07 -1.33 5.45 -104.62 -0.57 -1.90 16 15 C -0.05 -0.91 5.88 -104.63 -0.62 -1.53 16 16 C -0.12 -2.33 7.93 36.00 0.29 -2.04 16 17 C -0.13 -2.23 9.49 -39.55 -0.38 -2.61 16 18 C -0.04 -0.72 6.32 -39.50 -0.25 -0.97 16 19 Cl -0.10 -1.43 28.96 -51.86 -1.50 -2.93 16 20 C -0.13 -2.08 9.49 -39.55 -0.38 -2.46 16 21 C -0.07 -1.25 4.70 -104.63 -0.49 -1.74 16 22 C -0.12 -1.86 7.90 36.01 0.28 -1.58 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.14 4.98 -51.93 -0.26 0.88 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.04 0.70 6.04 -51.93 -0.31 0.38 16 30 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.04 0.76 6.46 -51.93 -0.34 0.42 16 32 H 0.11 2.64 3.50 -51.93 -0.18 2.46 16 33 H 0.08 1.67 5.59 -51.93 -0.29 1.38 16 34 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.09 2.04 4.81 -51.93 -0.25 1.79 16 36 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.09 1.44 2.80 -51.93 -0.15 1.29 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -25.34 316.95 -8.90 -34.24 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.54 Total: 3.30 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.12 Total: -18.88 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.19 Total: -36.00 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.70 Total: 15.49 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.34 -8.90 -34.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511522900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.424 kcal (2) G-P(sol) polarization free energy of solvation -25.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds