Wall clock time and date at job start Fri Apr 10 2020 14:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47514 * 2 1 4 4 N 1.46905 * 109.46675 * 119.99720 * 2 1 3 5 5 C 1.46900 * 110.99774 * 150.25059 * 4 2 1 6 6 C 1.50697 * 109.46867 * 288.03191 * 5 4 2 7 7 H 1.07999 * 120.00286 * 4.54733 * 6 5 4 8 8 C 1.37883 * 119.99983 * 184.54425 * 6 5 4 9 9 N 1.31512 * 119.99774 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99939 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47399 * 60.00414 * 10 8 6 12 12 H 1.48507 * 109.46987 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47133 * 299.99949 * 10 8 6 14 14 C 1.46904 * 110.99823 * 274.20046 * 4 2 1 15 15 C 1.52996 * 109.47168 * 76.91792 * 14 4 2 16 16 C 1.50695 * 109.47235 * 173.45860 * 15 14 4 17 17 C 1.38267 * 119.99443 * 270.27158 * 16 15 14 18 18 C 1.38216 * 120.02513 * 180.27340 * 17 16 15 19 19 C 1.38243 * 120.01366 * 359.45235 * 18 17 16 20 20 C 1.38326 * 119.98686 * 0.27754 * 19 18 17 21 21 Cl 1.73599 * 120.01592 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99202 * 90.00251 * 16 15 14 23 23 H 1.09003 * 109.47173 * 314.10005 * 1 2 3 24 24 H 1.09000 * 109.46775 * 74.09137 * 1 2 3 25 25 H 1.08997 * 109.47317 * 194.09263 * 1 2 3 26 26 H 1.08997 * 109.47645 * 239.99546 * 2 1 3 27 27 H 1.08997 * 109.47315 * 167.99679 * 3 2 1 28 28 H 1.09001 * 109.46670 * 287.99712 * 3 2 1 29 29 H 1.08997 * 109.46813 * 47.99087 * 3 2 1 30 30 H 1.08997 * 109.47417 * 48.03195 * 5 4 2 31 31 H 1.09005 * 109.47119 * 168.03451 * 5 4 2 32 32 H 0.97005 * 119.99592 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47264 * 316.91526 * 14 4 2 34 34 H 1.09002 * 109.46800 * 196.91847 * 14 4 2 35 35 H 1.09006 * 109.47154 * 53.45767 * 15 14 4 36 36 H 1.09001 * 109.47219 * 293.45916 * 15 14 4 37 37 H 1.07998 * 119.98588 * 0.02762 * 17 16 15 38 38 H 1.07998 * 119.99420 * 179.72450 * 18 17 16 39 39 H 1.07995 * 120.00601 * 180.25046 * 19 18 17 40 40 H 1.07998 * 120.01111 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 3.3176 -1.3316 0.9455 6 6 3.1215 -2.5290 0.0518 7 1 2.1440 -2.7468 -0.3526 8 6 4.1901 -3.3466 -0.2497 9 7 5.3803 -3.0816 0.2430 10 14 3.9471 -4.8305 -1.3581 11 1 3.4532 -4.3819 -2.6847 12 1 5.2407 -5.5405 -1.5252 13 1 2.9544 -5.7491 -0.7449 14 6 2.1002 0.2272 2.3422 15 6 0.6975 0.4672 2.9038 16 6 0.7952 1.2791 4.1696 17 6 0.9295 0.6433 5.3900 18 6 1.0136 1.3872 6.5519 19 6 0.9747 2.7678 6.4933 20 6 0.8460 3.4047 5.2721 21 17 0.7965 5.1384 5.1978 22 6 0.7562 2.6592 4.1098 23 1 -0.3634 0.7152 0.7380 24 1 -0.3633 0.2817 -0.9883 25 1 -0.3634 -0.9967 0.2502 26 1 1.8934 -0.5139 -0.8899 27 1 3.1089 1.4500 0.2137 28 1 1.8618 1.8909 -0.9774 29 1 1.5128 2.0143 0.7636 30 1 3.9839 -0.6198 0.4582 31 1 3.7562 -1.6516 1.8907 32 1 6.1319 -3.6570 0.0312 33 1 2.5282 1.1752 2.0161 34 1 2.7317 -0.2094 3.1161 35 1 0.2247 -0.4904 3.1220 36 1 0.1001 1.0085 2.1702 37 1 0.9648 -0.4352 5.4357 38 1 1.1140 0.8899 7.5052 39 1 1.0445 3.3490 7.4009 40 1 0.6552 3.1559 3.1561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562679519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:04 Heat of formation + Delta-G solvation = 14.119392 kcal Electronic energy + Delta-G solvation = -19718.544510 eV Core-core repulsion = 16751.791544 eV Total energy + Delta-G solvation = -2966.752966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.57704 -37.92647 -36.56250 -33.29454 -32.69551 -30.91717 -30.70518 -28.64861 -26.88303 -25.90563 -23.10211 -22.70829 -21.99241 -20.83204 -18.84615 -17.00302 -16.21444 -15.97362 -15.58312 -15.14221 -14.73455 -14.26273 -13.82934 -13.74970 -13.34544 -13.24153 -12.80561 -12.33968 -12.15089 -12.03986 -11.97007 -11.63926 -11.54466 -11.38514 -11.27795 -10.97358 -10.84562 -10.77221 -10.69003 -10.36108 -10.26948 -9.78691 -9.70822 -9.25625 -8.92295 -8.66707 -8.41878 -7.19498 -6.00929 -4.01986 1.10511 1.20932 2.02215 3.34079 3.38211 3.41071 3.56793 4.42356 4.64507 4.73350 4.92771 5.12357 5.23377 5.29003 5.34426 5.36727 5.53312 5.68571 5.70695 5.78129 5.80632 5.95678 6.04111 6.10392 6.13722 6.22887 6.27472 6.28645 6.34095 6.43413 6.58495 6.64588 6.76236 6.84590 6.89085 7.31525 7.37639 7.84207 8.13855 8.26551 8.57830 9.05646 9.61938 11.09609 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025722 B = 0.003618 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.316329 B = 7736.525839 C = 8160.896602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 C -0.175 4.175 4 N -0.529 5.529 5 C 0.193 3.807 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.052 3.948 15 C -0.085 4.085 16 C -0.055 4.055 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.123 4.123 20 C -0.033 4.033 21 Cl -0.080 7.080 22 C -0.111 4.111 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.051 0.949 30 H -0.011 1.011 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 12.327 9.645 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.233 4.233 4 N -0.253 5.253 5 C 0.068 3.932 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.076 4.076 15 C -0.122 4.122 16 C -0.056 4.056 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.059 4.059 21 Cl -0.051 7.051 22 C -0.130 4.130 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.007 0.993 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.168 12.026 9.747 18.521 hybrid contribution 0.684 0.010 -0.719 0.993 sum -9.484 12.035 9.028 17.785 Atomic orbital electron populations 1.22057 0.95979 1.01997 0.99927 1.21627 0.94524 0.91692 0.95361 1.22421 1.01291 0.98836 1.00773 1.62282 1.31612 1.28490 1.02902 1.19754 0.83450 0.93097 0.96859 1.21133 0.95082 1.09500 1.28574 0.91960 1.24981 0.95155 0.97997 0.96477 1.69950 0.99993 1.38909 1.45100 0.86583 0.77175 0.82764 0.81005 1.20319 1.21430 1.20199 1.22158 0.94586 0.96198 0.94692 1.20981 0.99254 0.99478 0.92521 1.20090 0.96602 0.92879 0.96055 1.21281 0.99087 1.00743 0.91802 1.21111 0.99503 0.93002 0.98823 1.20980 1.02072 0.94898 0.96267 1.20908 1.05566 0.84074 0.95369 1.98359 1.96978 1.10956 1.98812 1.20978 1.01311 0.93471 0.97198 0.93146 0.93741 0.91887 0.89468 0.92706 0.93218 0.93046 0.99345 0.95162 0.92929 0.94279 0.91780 0.89882 0.90242 0.85101 0.85246 0.85370 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.80 37.16 0.33 -1.84 16 2 C 0.08 1.41 2.65 -67.71 -0.18 1.23 16 3 C -0.17 -2.80 7.76 37.16 0.29 -2.51 16 4 N -0.53 -10.81 4.28 -228.08 -0.98 -11.79 16 5 C 0.19 4.92 4.64 -4.98 -0.02 4.90 16 6 C -0.50 -13.94 8.36 -34.44 -0.29 -14.23 16 7 H 0.06 1.70 7.70 -52.49 -0.40 1.30 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.05 0.90 4.48 -3.82 -0.02 0.88 16 15 C -0.08 -1.18 4.74 -27.89 -0.13 -1.32 16 16 C -0.06 -0.71 5.13 -104.63 -0.54 -1.24 16 17 C -0.11 -1.30 9.70 -39.58 -0.38 -1.69 16 18 C -0.11 -1.10 10.05 -39.59 -0.40 -1.49 16 19 C -0.12 -1.30 9.83 -39.55 -0.39 -1.69 16 20 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 21 Cl -0.08 -0.87 28.96 -51.86 -1.50 -2.37 16 22 C -0.11 -1.36 9.49 -39.55 -0.38 -1.73 16 23 H 0.05 0.68 5.00 -51.93 -0.26 0.42 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.84 7.00 -51.93 -0.36 1.47 16 27 H 0.05 0.97 7.06 -51.93 -0.37 0.60 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.73 6.21 -51.93 -0.32 0.41 16 30 H -0.01 -0.31 7.53 -51.93 -0.39 -0.70 16 31 H 0.03 0.83 7.67 -51.93 -0.40 0.43 16 32 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 33 H 0.04 0.67 5.13 -51.93 -0.27 0.40 16 34 H 0.06 1.17 7.62 -51.93 -0.40 0.78 16 35 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 36 H 0.08 1.06 4.52 -51.93 -0.23 0.82 16 37 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -28.91 333.28 -10.11 -39.02 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.92 Total: -0.62 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.45 Total: -19.92 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.24 Total: -37.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.91 -10.11 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562679519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.135 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds