Wall clock time and date at job start Fri Apr 10 2020 14:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47245 * 2 1 4 4 H 1.08999 * 109.47076 * 54.49674 * 3 2 1 5 5 C 1.50701 * 109.47064 * 174.49859 * 3 2 1 6 6 H 1.07999 * 120.00216 * 120.00217 * 5 3 2 7 7 C 1.37878 * 119.99962 * 299.99564 * 5 3 2 8 8 N 1.31523 * 119.99794 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00343 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46918 * 60.00500 * 9 7 5 11 11 H 1.48498 * 109.47413 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47190 * 300.00829 * 9 7 5 13 13 N 1.46902 * 109.47386 * 294.50019 * 3 2 1 14 14 C 1.46890 * 111.00104 * 153.01979 * 13 3 2 15 15 H 1.09004 * 109.47654 * 33.80931 * 14 13 3 16 16 C 1.53004 * 109.47154 * 273.80611 * 14 13 3 17 17 C 1.53006 * 109.47365 * 153.80656 * 14 13 3 18 18 C 1.50703 * 109.47090 * 295.00208 * 17 14 13 19 19 C 1.38239 * 120.00291 * 264.72121 * 18 17 14 20 20 C 1.38219 * 120.00959 * 179.77101 * 19 18 17 21 21 C 1.38267 * 120.02675 * 0.49999 * 20 19 18 22 22 C 1.38186 * 120.01502 * 359.75292 * 21 20 19 23 23 C 1.38327 * 120.00714 * 84.99311 * 18 17 14 24 24 Cl 1.73598 * 120.01466 * 359.96093 * 23 18 17 25 25 H 1.08997 * 109.47552 * 60.60911 * 1 2 3 26 26 H 1.08997 * 109.47371 * 180.60928 * 1 2 3 27 27 H 1.09000 * 109.47102 * 300.61067 * 1 2 3 28 28 H 1.09003 * 109.46814 * 120.00451 * 2 1 3 29 29 H 1.09004 * 109.46957 * 239.99927 * 2 1 3 30 30 H 0.97006 * 119.99357 * 179.97438 * 8 7 5 31 31 H 1.00892 * 110.99978 * 29.06057 * 13 3 2 32 32 H 1.08995 * 109.46810 * 64.69507 * 16 14 13 33 33 H 1.09006 * 109.47065 * 184.69341 * 16 14 13 34 34 H 1.09000 * 109.47002 * 304.68821 * 16 14 13 35 35 H 1.08999 * 109.46695 * 54.99635 * 17 14 13 36 36 H 1.08999 * 109.47290 * 175.00062 * 17 14 13 37 37 H 1.08000 * 119.99093 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.98362 * 180.23604 * 20 19 18 39 39 H 1.08001 * 119.98778 * 179.76674 * 21 20 19 40 40 H 1.08001 * 120.00837 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5984 1.9839 0.8366 5 6 3.5408 1.4446 0.1362 6 1 4.1525 1.8869 -0.6361 7 6 4.1330 0.8819 1.2470 8 7 3.3881 0.3429 2.1874 9 14 5.9934 0.8839 1.4156 10 1 6.4889 2.2838 1.4153 11 1 6.3757 0.2233 2.6894 12 1 6.5945 0.1458 0.2758 13 7 1.6617 2.0956 -1.2603 14 6 1.5358 3.5483 -1.0832 15 1 2.2646 3.8893 -0.3478 16 6 0.1246 3.8822 -0.5954 17 6 1.7930 4.2492 -2.4187 18 6 3.2222 4.0212 -2.8387 19 6 4.1889 4.9634 -2.5411 20 6 5.5006 4.7522 -2.9221 21 6 5.8449 3.6034 -3.6101 22 6 4.8785 2.6632 -3.9128 23 6 3.5659 2.8716 -3.5271 24 17 2.3514 1.6907 -3.9065 25 1 -0.3634 0.5043 -0.8953 26 1 -0.3634 -1.0276 0.0109 27 1 -0.3633 0.5233 0.8845 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8048 -0.0532 2.9687 31 1 0.8101 1.7013 -1.6305 32 1 -0.0291 3.4520 0.3942 33 1 0.0046 4.9644 -0.5437 34 1 -0.6071 3.4683 -1.2893 35 1 1.1225 3.8440 -3.1766 36 1 1.6128 5.3185 -2.3085 37 1 3.9198 5.8628 -2.0072 38 1 6.2562 5.4869 -2.6859 39 1 6.8694 3.4407 -3.9108 40 1 5.1474 1.7660 -4.4506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116639470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:15 Heat of formation + Delta-G solvation = 5.637266 kcal Electronic energy + Delta-G solvation = -20884.906257 eV Core-core repulsion = 17917.785479 eV Total energy + Delta-G solvation = -2967.120778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.06079 -36.88647 -35.63520 -34.00818 -31.80496 -30.91174 -30.20461 -28.62481 -26.07925 -25.92058 -22.76115 -22.22583 -21.39655 -19.83078 -19.46985 -16.60398 -16.10657 -15.38744 -15.06765 -14.67616 -14.19892 -13.96696 -13.54149 -13.32813 -13.11936 -12.82342 -12.53345 -12.33847 -11.91912 -11.69775 -11.59513 -11.30594 -11.01702 -10.87702 -10.84119 -10.80101 -10.67222 -10.57167 -10.33949 -9.88472 -9.80184 -9.59612 -9.44577 -8.96557 -8.41551 -8.24140 -8.02002 -6.95332 -5.86211 -3.88200 1.69214 1.73011 2.91061 3.39066 3.42741 3.47163 4.10071 4.53269 5.08480 5.17783 5.31665 5.35726 5.44218 5.60388 5.64338 5.79020 5.83188 5.98660 6.02171 6.12776 6.21456 6.23060 6.23845 6.32395 6.41440 6.47201 6.62420 6.67929 6.76485 6.80307 6.91472 6.95921 7.19253 7.25886 7.30288 7.63361 7.89138 8.05356 8.46537 8.54183 8.92297 9.20818 9.76168 11.19021 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.009031 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.739719 B = 3099.695593 C = 4160.515035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.222 3.778 4 H -0.001 1.001 5 C -0.478 4.478 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.667 5.667 14 C 0.094 3.906 15 H 0.081 0.919 16 C -0.177 4.177 17 C -0.072 4.072 18 C -0.048 4.048 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.117 4.117 23 C 0.010 3.990 24 Cl -0.055 7.055 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.257 0.743 31 H 0.316 0.684 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 7.248 -10.375 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.115 3.885 4 H 0.017 0.983 5 C -0.517 4.517 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.298 5.298 14 C -0.018 4.018 15 H 0.099 0.901 16 C -0.236 4.236 17 C -0.110 4.110 18 C -0.049 4.049 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.017 4.017 24 Cl -0.026 7.026 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.305 7.065 -10.460 12.689 hybrid contribution 0.195 -0.196 0.848 0.892 sum -1.109 6.869 -9.611 11.865 Atomic orbital electron populations 1.21871 0.99866 0.99315 0.99499 1.21755 0.90956 1.00763 1.02851 1.19099 0.95142 0.89657 0.84623 0.98298 1.21173 0.91354 1.35450 1.03730 0.92184 1.24921 0.97524 0.96050 0.96088 1.69870 1.34443 1.40030 1.09684 0.86716 0.86636 0.78027 0.76940 1.20566 1.21704 1.20447 1.60972 1.36906 1.00576 1.31393 1.21419 0.94754 0.91034 0.94561 0.90093 1.22515 0.98758 1.00782 1.01517 1.20732 0.92082 0.99510 0.98714 1.19562 0.96592 0.92820 0.95902 1.20912 0.92711 0.99143 1.00233 1.21033 0.96196 0.97822 0.99215 1.20925 0.98722 0.94376 0.99864 1.20964 0.91489 0.99692 1.01480 1.20567 0.90125 0.91020 0.99963 1.98326 1.55338 1.56790 1.92154 0.94711 0.94709 0.94042 0.88499 0.94214 0.93318 0.86557 0.92556 0.93299 0.93324 0.90997 0.91792 0.86070 0.86421 0.86184 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.74 37.16 0.36 -2.52 16 2 C -0.12 -2.93 5.35 -26.74 -0.14 -3.07 16 3 C 0.22 5.35 1.82 -68.87 -0.13 5.22 16 4 H 0.00 -0.02 7.24 -51.93 -0.38 -0.39 16 5 C -0.48 -12.96 8.61 -34.44 -0.30 -13.26 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.72 11.29 55.43 0.63 -25.10 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.67 -13.30 3.15 -100.96 -0.32 -13.61 16 14 C 0.09 1.66 2.37 -67.71 -0.16 1.50 16 15 H 0.08 1.68 7.70 -51.93 -0.40 1.28 16 16 C -0.18 -2.74 9.17 37.16 0.34 -2.40 16 17 C -0.07 -1.11 4.71 -27.88 -0.13 -1.24 16 18 C -0.05 -0.80 5.02 -104.59 -0.53 -1.32 16 19 C -0.11 -1.71 9.68 -39.59 -0.38 -2.09 16 20 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 21 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 22 C -0.12 -1.90 9.83 -39.55 -0.39 -2.29 16 23 C 0.01 0.17 6.02 -39.50 -0.24 -0.06 16 24 Cl -0.06 -0.93 24.83 -51.86 -1.29 -2.22 16 25 H 0.03 0.61 6.48 -51.93 -0.34 0.28 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.32 6.01 5.89 -39.30 -0.23 5.78 16 32 H 0.06 0.96 7.60 -51.93 -0.39 0.57 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.07 1.07 7.13 -51.93 -0.37 0.70 16 36 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -28.32 332.83 -9.74 -38.07 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.18 Total: 5.45 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -2.58 Total: -24.53 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.31 Total: -38.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.29 Total: -2.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.32 -9.74 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116639470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.706 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds