Wall clock time and date at job start Fri Apr 10 2020 14:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47245 * 2 1 4 4 H 1.08999 * 109.47076 * 54.49674 * 3 2 1 5 5 C 1.50701 * 109.47064 * 174.49859 * 3 2 1 6 6 H 1.07999 * 120.00216 * 120.00217 * 5 3 2 7 7 C 1.37878 * 119.99962 * 299.99564 * 5 3 2 8 8 N 1.31523 * 119.99794 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00343 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46918 * 60.00500 * 9 7 5 11 11 H 1.48498 * 109.47413 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47190 * 300.00829 * 9 7 5 13 13 N 1.46902 * 109.47386 * 294.50019 * 3 2 1 14 14 C 1.46890 * 111.00104 * 153.01979 * 13 3 2 15 15 H 1.09004 * 109.47654 * 33.80931 * 14 13 3 16 16 C 1.53004 * 109.47154 * 273.80611 * 14 13 3 17 17 C 1.53006 * 109.47365 * 153.80656 * 14 13 3 18 18 C 1.50703 * 109.47090 * 295.00208 * 17 14 13 19 19 C 1.38239 * 120.00291 * 264.72121 * 18 17 14 20 20 C 1.38219 * 120.00959 * 179.77101 * 19 18 17 21 21 C 1.38267 * 120.02675 * 0.49999 * 20 19 18 22 22 C 1.38186 * 120.01502 * 359.75292 * 21 20 19 23 23 C 1.38327 * 120.00714 * 84.99311 * 18 17 14 24 24 Cl 1.73598 * 120.01466 * 359.96093 * 23 18 17 25 25 H 1.08997 * 109.47552 * 60.60911 * 1 2 3 26 26 H 1.08997 * 109.47371 * 180.60928 * 1 2 3 27 27 H 1.09000 * 109.47102 * 300.61067 * 1 2 3 28 28 H 1.09003 * 109.46814 * 120.00451 * 2 1 3 29 29 H 1.09004 * 109.46957 * 239.99927 * 2 1 3 30 30 H 0.97006 * 119.99357 * 179.97438 * 8 7 5 31 31 H 1.00892 * 110.99978 * 29.06057 * 13 3 2 32 32 H 1.08995 * 109.46810 * 64.69507 * 16 14 13 33 33 H 1.09006 * 109.47065 * 184.69341 * 16 14 13 34 34 H 1.09000 * 109.47002 * 304.68821 * 16 14 13 35 35 H 1.08999 * 109.46695 * 54.99635 * 17 14 13 36 36 H 1.08999 * 109.47290 * 175.00062 * 17 14 13 37 37 H 1.08000 * 119.99093 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.98362 * 180.23604 * 20 19 18 39 39 H 1.08001 * 119.98778 * 179.76674 * 21 20 19 40 40 H 1.08001 * 120.00837 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5984 1.9839 0.8366 5 6 3.5408 1.4446 0.1362 6 1 4.1525 1.8869 -0.6361 7 6 4.1330 0.8819 1.2470 8 7 3.3881 0.3429 2.1874 9 14 5.9934 0.8839 1.4156 10 1 6.4889 2.2838 1.4153 11 1 6.3757 0.2233 2.6894 12 1 6.5945 0.1458 0.2758 13 7 1.6617 2.0956 -1.2603 14 6 1.5358 3.5483 -1.0832 15 1 2.2646 3.8893 -0.3478 16 6 0.1246 3.8822 -0.5954 17 6 1.7930 4.2492 -2.4187 18 6 3.2222 4.0212 -2.8387 19 6 4.1889 4.9634 -2.5411 20 6 5.5006 4.7522 -2.9221 21 6 5.8449 3.6034 -3.6101 22 6 4.8785 2.6632 -3.9128 23 6 3.5659 2.8716 -3.5271 24 17 2.3514 1.6907 -3.9065 25 1 -0.3634 0.5043 -0.8953 26 1 -0.3634 -1.0276 0.0109 27 1 -0.3633 0.5233 0.8845 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8048 -0.0532 2.9687 31 1 0.8101 1.7013 -1.6305 32 1 -0.0291 3.4520 0.3942 33 1 0.0046 4.9644 -0.5437 34 1 -0.6071 3.4683 -1.2893 35 1 1.1225 3.8440 -3.1766 36 1 1.6128 5.3185 -2.3085 37 1 3.9198 5.8628 -2.0072 38 1 6.2562 5.4869 -2.6859 39 1 6.8694 3.4407 -3.9108 40 1 5.1474 1.7660 -4.4506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116639470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:15 Heat of formation + Delta-G solvation = -7.573468 kcal Electronic energy + Delta-G solvation = -20885.479118 eV Core-core repulsion = 17917.785479 eV Total energy + Delta-G solvation = -2967.693639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27513 -38.47980 -36.90747 -35.67054 -33.69993 -32.32648 -31.38496 -30.21110 -27.87733 -27.26703 -24.62448 -23.41378 -22.66883 -21.40296 -21.15585 -18.19810 -17.78681 -16.94108 -16.37708 -16.27040 -15.73563 -15.59026 -14.96884 -14.65876 -14.52385 -14.31241 -14.18734 -13.68656 -13.37067 -13.20747 -13.04394 -12.85649 -12.76750 -12.53579 -12.46170 -12.11249 -12.07225 -12.04173 -11.85223 -11.69617 -11.48106 -11.29557 -11.05769 -10.90318 -10.34980 -9.61407 -9.27436 -8.62331 -7.97508 -6.06365 0.49379 0.53934 1.40036 1.41232 1.48375 1.64922 2.47516 2.90682 3.27139 3.75318 3.97078 4.08459 4.22819 4.32865 4.44891 4.53375 4.58208 4.61200 4.62000 4.68410 4.76098 4.84845 4.90965 5.03447 5.08521 5.13389 5.19209 5.28679 5.33792 5.41154 5.48168 5.52767 5.63363 5.68987 5.74854 5.87049 6.00988 6.11492 6.49725 6.71989 7.09563 7.19927 7.61909 9.04407 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.009031 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.739719 B = 3099.695593 C = 4160.515035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.234 3.766 4 H -0.033 1.033 5 C -0.483 4.483 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.923 5.923 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.661 5.661 14 C 0.094 3.906 15 H 0.047 0.953 16 C -0.168 4.168 17 C -0.063 4.063 18 C -0.068 4.068 19 C -0.121 4.121 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.012 4.012 24 Cl -0.062 7.062 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.255 0.745 31 H 0.323 0.677 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 8.429 -11.340 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.126 3.874 4 H -0.016 1.016 5 C -0.522 4.522 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.564 5.564 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.292 5.292 14 C -0.017 4.017 15 H 0.065 0.935 16 C -0.227 4.227 17 C -0.101 4.101 18 C -0.069 4.069 19 C -0.139 4.139 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.155 4.155 23 C -0.039 4.039 24 Cl -0.033 7.033 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.219 8.258 -11.441 14.162 hybrid contribution 0.201 -0.519 1.122 1.253 sum -1.018 7.739 -10.319 12.938 Atomic orbital electron populations 1.21721 0.96629 1.00745 1.00242 1.21570 0.93861 0.99743 1.00658 1.18789 0.93421 0.89981 0.85259 1.01594 1.21377 0.92961 1.34738 1.03139 0.93568 1.25554 1.01085 0.96133 0.96086 1.70000 1.35672 1.40768 1.09985 0.85880 0.82486 0.78040 0.76818 1.20128 1.21416 1.20309 1.60864 1.37459 1.01918 1.28985 1.21408 0.95302 0.89596 0.95412 0.93501 1.22401 0.97391 1.02465 1.00460 1.20668 0.91739 1.00744 0.96957 1.19818 0.97541 0.93150 0.96402 1.21262 0.92977 0.99624 1.00081 1.21436 0.96633 0.98252 0.98362 1.21301 0.99700 0.94029 0.99278 1.21228 0.91642 1.00587 1.02029 1.20822 0.90563 0.91431 1.01064 1.98310 1.55633 1.57119 1.92250 0.92622 0.92930 0.94568 0.91873 0.95062 0.93562 0.85810 0.94749 0.90782 0.91703 0.90404 0.89156 0.84141 0.83664 0.83648 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.74 71.98 0.70 -4.47 16 2 C -0.12 -5.68 5.35 30.59 0.16 -5.52 16 3 C 0.23 11.46 1.82 44.17 0.08 11.54 16 4 H -0.03 -1.84 7.24 -2.39 -0.02 -1.86 16 5 C -0.48 -26.65 8.61 25.60 0.22 -26.43 16 6 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -53.87 11.29 21.45 0.24 -53.62 16 9 Si 0.94 45.32 29.54 68.60 2.03 47.35 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 N -0.66 -26.18 3.15 -473.32 -1.49 -27.68 16 14 C 0.09 3.26 2.37 44.92 0.11 3.37 16 15 H 0.05 1.96 7.70 -2.38 -0.02 1.94 16 16 C -0.17 -4.95 9.17 71.98 0.66 -4.29 16 17 C -0.06 -1.82 4.71 29.85 0.14 -1.68 16 18 C -0.07 -2.18 5.02 -19.84 -0.10 -2.28 16 19 C -0.12 -3.49 9.68 22.27 0.22 -3.28 16 20 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 21 C -0.13 -3.47 10.05 22.26 0.22 -3.24 16 22 C -0.14 -4.29 9.83 22.29 0.22 -4.07 16 23 C -0.01 -0.41 6.02 22.33 0.13 -0.27 16 24 Cl -0.06 -2.07 24.83 -2.72 -0.07 -2.13 16 25 H 0.05 1.87 6.48 -2.39 -0.02 1.85 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 3.45 5.94 -2.39 -0.01 3.44 16 29 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 31 H 0.32 11.96 5.89 -89.70 -0.53 11.43 16 32 H 0.03 1.15 7.60 -2.39 -0.02 1.13 16 33 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.06 1.70 8.04 -2.39 -0.02 1.68 16 35 H 0.08 2.15 7.13 -2.39 -0.02 2.13 16 36 H 0.09 2.11 8.05 -2.39 -0.02 2.09 16 37 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -61.76 332.83 4.63 -57.13 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.49 Total: 21.91 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.44 Total: -42.95 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -1.25 Total: -81.30 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.13 kcal Total: -61.76 4.63 -57.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116639470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.554 kcal (2) G-P(sol) polarization free energy of solvation -61.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds