Wall clock time and date at job start Fri Apr 10 2020 14:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 N 1.46501 * 109.47666 * 120.00320 * 2 1 3 5 5 C 1.35054 * 125.92346 * 275.00328 * 4 2 1 6 6 C 1.35072 * 107.98927 * 179.97438 * 5 4 2 7 7 C 1.40884 * 107.84654 * 359.97438 * 6 5 4 8 8 C 1.48334 * 126.04300 * 179.97438 * 7 6 5 9 9 C 1.39812 * 119.53505 * 359.72991 * 8 7 6 10 10 C 1.37705 * 121.17042 * 179.75091 * 9 8 7 11 11 C 1.39587 * 120.18726 * 0.52441 * 10 9 8 12 12 C 1.43198 * 120.45795 * 179.72115 * 11 10 9 13 13 N 8.99207 * 135.84024 * 227.89149 * 4 1 2 14 14 C 1.46546 * 119.08258 * 359.73626 * 11 10 9 15 15 C 1.40847 * 120.55044 * 179.97438 * 14 11 10 16 16 H 1.07992 * 119.99986 * 330.13788 * 15 14 11 17 17 C 1.40227 * 119.99526 * 150.13706 * 15 14 11 18 18 N 1.30663 * 119.99770 * 161.90720 * 17 15 14 19 19 Si 1.86795 * 120.00536 * 341.90783 * 17 15 14 20 20 H 1.48499 * 109.47436 * 95.39248 * 19 17 15 21 21 H 1.48506 * 109.47346 * 215.39408 * 19 17 15 22 22 H 1.48501 * 109.47052 * 335.39241 * 19 17 15 23 23 C 1.38604 * 119.53658 * 180.02562 * 8 7 6 24 24 N 1.31670 * 107.91406 * 359.72020 * 7 6 5 25 25 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47012 * 59.99418 * 1 2 3 27 27 H 1.09002 * 109.46732 * 299.99692 * 1 2 3 28 28 H 1.09003 * 109.47252 * 240.00871 * 2 1 3 29 29 H 1.09002 * 109.47070 * 60.00515 * 3 2 1 30 30 H 1.09000 * 109.47308 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47494 * 300.00711 * 3 2 1 32 32 H 1.07998 * 126.01043 * 359.97438 * 5 4 2 33 33 H 1.07989 * 126.07873 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.41046 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.90347 * 180.26034 * 10 9 8 36 36 H 0.97003 * 120.00139 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.12821 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1927 -0.1366 2.4154 6 6 2.6549 -1.0953 3.2470 7 6 2.7691 -2.2895 2.5082 8 6 3.2401 -3.5962 3.0288 9 6 3.6235 -3.7066 4.3687 10 6 4.0612 -4.9043 4.8885 11 6 4.1399 -6.0357 4.0747 12 6 4.5998 -7.2827 4.6077 13 7 4.9702 -8.2705 5.0290 14 6 3.7456 -5.9296 2.6673 15 6 3.8133 -7.0514 1.8183 16 1 4.5528 -7.8183 1.9948 17 6 2.9203 -7.1723 0.7439 18 7 3.1859 -7.9936 -0.2370 19 14 1.3511 -6.1593 0.7149 20 1 1.5732 -4.9252 -0.0805 21 1 0.2593 -6.9554 0.0989 22 1 0.9733 -5.7921 2.1033 23 6 3.2999 -4.6891 2.1784 24 7 2.3785 -2.0419 1.2754 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.9970 0.8922 2.6791 33 1 2.8943 -0.9690 4.2925 34 1 3.5714 -2.8381 5.0086 35 1 4.3484 -4.9674 5.9277 36 1 2.5680 -8.0776 -0.9801 37 1 3.0047 -4.5881 1.1444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242454616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:43 Heat of formation + Delta-G solvation = 94.877767 kcal Electronic energy + Delta-G solvation = -20657.289016 eV Core-core repulsion = 17592.930502 eV Total energy + Delta-G solvation = -3064.358514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08819 -39.59542 -37.19352 -36.56876 -35.73395 -32.88836 -32.46453 -30.88996 -29.87870 -28.18621 -27.42647 -25.12573 -23.38798 -22.94373 -21.17513 -20.57741 -19.47451 -19.05754 -18.03842 -17.13579 -16.24277 -16.06086 -15.89024 -15.42530 -15.24287 -14.81098 -14.56867 -14.41562 -14.24591 -13.96811 -13.89990 -13.54847 -13.44938 -13.26267 -13.16043 -12.99270 -12.85339 -12.67161 -12.34149 -12.16693 -12.09131 -11.92655 -11.71380 -11.39113 -11.09607 -10.58495 -9.64037 -9.61284 -9.11032 -8.93835 -6.68444 -0.11249 0.81618 1.11498 1.25030 1.31464 1.42127 1.63567 1.80458 1.98570 2.02997 2.53828 2.61001 3.49280 3.50909 3.53365 3.82757 3.96637 4.00625 4.12293 4.21545 4.41354 4.64673 4.68121 4.72538 4.76755 4.81771 4.86745 4.90082 4.95501 5.12184 5.14387 5.18647 5.25014 5.29519 5.55847 5.72648 5.76471 5.92326 6.01288 6.17777 6.30174 6.47831 6.59298 6.87063 6.89698 7.95689 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.005608 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.384212 B = 4991.526603 C = 6270.471809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.141 3.859 3 C -0.152 4.152 4 N -0.369 5.369 5 C 0.064 3.936 6 C -0.265 4.265 7 C 0.088 3.912 8 C 0.043 3.957 9 C -0.200 4.200 10 C -0.009 4.009 11 C -0.179 4.179 12 C 0.304 3.696 13 N -0.520 5.520 14 C 0.116 3.884 15 C -0.459 4.459 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.820 5.820 19 Si 0.957 3.043 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.249 1.249 23 C -0.223 4.223 24 N -0.338 5.338 25 H 0.035 0.965 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.218 0.782 33 H 0.174 0.826 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.301 0.699 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 24.213 0.835 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 C -0.210 4.210 4 N -0.152 5.152 5 C -0.081 4.081 6 C -0.293 4.293 7 C -0.075 4.075 8 C 0.040 3.960 9 C -0.221 4.221 10 C -0.029 4.029 11 C -0.185 4.185 12 C -0.006 4.006 13 N -0.199 5.199 14 C 0.111 3.889 15 C -0.487 4.487 16 H 0.077 0.923 17 C -0.161 4.161 18 N -0.444 5.444 19 Si 0.780 3.220 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.172 1.172 23 C -0.244 4.244 24 N -0.161 5.161 25 H 0.055 0.945 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.235 0.765 33 H 0.192 0.808 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.112 0.888 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.284 22.137 -0.092 23.305 hybrid contribution -0.267 -0.105 -0.133 0.316 sum -7.552 22.032 -0.225 23.291 Atomic orbital electron populations 1.22213 0.92650 1.02059 1.04741 1.21615 0.95660 0.94120 0.84596 1.22159 1.01771 0.91563 1.05544 1.49213 1.49966 1.05962 1.10093 1.23026 0.99552 1.01225 0.84328 1.21817 1.13858 0.90922 1.02753 1.21119 0.99681 0.95013 0.91678 1.17975 0.95382 0.88659 0.93998 1.20593 1.09399 0.98511 0.93570 1.20910 0.93391 0.89961 0.98655 1.17212 1.19778 0.88335 0.93164 1.25921 0.91042 0.92628 0.91011 1.81013 1.14965 1.11813 1.12119 1.18508 0.88647 0.92040 0.89682 1.19497 1.15499 1.05664 1.08073 0.92289 1.26854 1.02104 0.94957 0.92219 1.69615 1.36852 1.31267 1.06647 0.85596 0.77023 0.78172 0.81248 1.18204 1.19833 1.17206 1.21030 1.11845 0.92432 0.99044 1.77614 1.22567 0.95318 1.20605 0.94538 0.87912 0.90727 0.89728 0.89622 0.92322 0.87816 0.76530 0.80817 0.82806 0.83342 0.88771 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.52 71.98 0.69 -1.71 16 2 C 0.14 2.56 3.93 44.99 0.18 2.74 16 3 C -0.15 -1.48 8.83 71.98 0.64 -0.84 16 4 N -0.37 -9.68 3.53 -327.60 -1.15 -10.84 16 5 C 0.06 1.32 10.57 83.47 0.88 2.20 16 6 C -0.26 -6.82 10.15 22.19 0.23 -6.60 16 7 C 0.09 3.16 6.98 42.51 0.30 3.46 16 8 C 0.04 1.71 5.86 -20.12 -0.12 1.59 16 9 C -0.20 -6.71 9.51 22.52 0.21 -6.50 16 10 C -0.01 -0.31 9.74 22.47 0.22 -0.09 16 11 C -0.18 -8.04 5.95 -19.54 -0.12 -8.16 16 12 C 0.30 14.45 14.35 88.33 1.27 15.72 16 13 N -0.52 -25.75 18.54 19.00 0.35 -25.40 16 14 C 0.12 5.88 5.26 -19.90 -0.10 5.78 16 15 C -0.46 -25.88 9.03 23.39 0.21 -25.67 16 16 H 0.06 3.66 7.65 -2.91 -0.02 3.63 16 17 C 0.06 3.13 5.41 85.35 0.46 3.59 16 18 N -0.82 -44.83 13.92 21.87 0.30 -44.53 16 19 Si 0.96 43.96 24.53 68.60 1.68 45.64 16 20 H -0.26 -11.76 6.72 99.48 0.67 -11.09 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.25 -11.62 6.86 99.48 0.68 -10.94 16 23 C -0.22 -10.54 6.80 22.93 0.16 -10.38 16 24 N -0.34 -12.73 12.18 -48.17 -0.59 -13.31 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 0.51 7.14 -2.39 -0.02 0.49 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.22 2.09 7.24 -2.91 -0.02 2.07 16 33 H 0.17 3.36 7.27 -2.92 -0.02 3.34 16 34 H 0.15 3.81 6.92 -2.91 -0.02 3.79 16 35 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.30 14.67 8.29 -92.71 -0.77 13.90 16 37 H 0.10 5.10 4.50 -2.91 -0.01 5.08 16 Total: -1.00 -70.95 321.17 6.72 -64.23 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.03 Total: 9.09 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 5.09 Total: -24.88 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -1.08 Total: -94.08 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.68 Total: 45.64 kcal Total: -70.95 6.72 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242454616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.105 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds