Wall clock time and date at job start Fri Apr 10 2020 14:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 N 1.46503 * 109.47258 * 119.99548 * 2 1 3 5 5 N 1.40070 * 126.14910 * 283.05009 * 4 2 1 6 6 C 1.30906 * 108.51993 * 180.26853 * 5 4 2 7 7 C 1.39459 * 108.61344 * 359.74446 * 6 5 4 8 8 C 1.36339 * 126.13994 * 102.86896 * 4 2 1 9 9 C 1.47869 * 126.35014 * 0.02562 * 8 4 2 10 10 C 1.39986 * 119.55439 * 332.44592 * 9 8 4 11 11 C 1.37648 * 121.15291 * 180.02562 * 10 9 8 12 12 C 1.39614 * 120.20785 * 0.02562 * 11 10 9 13 13 C 1.43205 * 120.43956 * 179.97438 * 12 11 10 14 14 N 7.59851 * 101.92436 * 213.46055 * 2 1 3 15 15 C 1.46563 * 119.12632 * 0.22748 * 12 11 10 16 16 C 1.40851 * 120.54696 * 179.74339 * 15 12 11 17 17 H 1.07993 * 119.99729 * 26.22037 * 16 15 12 18 18 C 1.40224 * 119.99957 * 206.20829 * 16 15 12 19 19 N 1.30670 * 119.99827 * 12.30792 * 18 16 15 20 20 Si 1.86800 * 120.00369 * 192.30209 * 18 16 15 21 21 H 1.48499 * 109.46850 * 90.00280 * 20 18 16 22 22 H 1.48495 * 109.47407 * 210.00488 * 20 18 16 23 23 H 1.48508 * 109.46832 * 330.00637 * 20 18 16 24 24 C 1.38807 * 119.55865 * 152.46782 * 9 8 4 25 25 H 1.09007 * 109.47142 * 300.00210 * 1 2 3 26 26 H 1.08999 * 109.47102 * 60.00028 * 1 2 3 27 27 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47019 * 239.99753 * 2 1 3 29 29 H 1.08999 * 109.46518 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46659 * 299.99413 * 3 2 1 31 31 H 1.08996 * 109.46959 * 60.00201 * 3 2 1 32 32 H 1.08005 * 125.69063 * 179.72263 * 6 5 4 33 33 H 1.08002 * 126.07145 * 180.02562 * 7 6 5 34 34 H 1.07993 * 119.42300 * 0.02562 * 10 9 8 35 35 H 1.07996 * 119.89628 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99925 * 184.98091 * 19 18 16 37 37 H 1.08003 * 120.13601 * 359.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 7 2.0530 -0.1683 2.4955 6 6 2.5586 -1.0738 3.2942 7 6 2.8617 -2.2097 2.5442 8 6 2.5176 -1.9583 1.2454 9 6 2.6659 -2.8867 0.1040 10 6 1.8062 -2.7728 -0.9949 11 6 1.9146 -3.6198 -2.0745 12 6 2.8928 -4.6158 -2.0905 13 6 3.0096 -5.5000 -3.2109 14 7 3.1000 -6.2024 -4.0991 15 6 3.7950 -4.7482 -0.9431 16 6 4.7890 -5.7459 -0.9254 17 1 5.1854 -6.1297 -1.8538 18 6 5.2642 -6.2406 0.2976 19 7 4.6300 -5.9622 1.4056 20 14 6.8037 -7.2976 0.3429 21 1 7.9957 -6.4289 0.5150 22 1 6.7170 -8.2500 1.4790 23 1 6.9221 -8.0543 -0.9294 24 6 3.6553 -3.8596 0.1369 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.7153 -0.9599 4.3568 33 1 3.2914 -3.1255 2.9224 34 1 1.0447 -2.0071 -0.9956 35 1 1.2403 -3.5140 -2.9114 36 1 4.9974 -6.2428 2.2584 37 1 4.3120 -3.9365 0.9909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242556557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:48 Heat of formation + Delta-G solvation = 110.120121 kcal Electronic energy + Delta-G solvation = -21050.050808 eV Core-core repulsion = 17986.353252 eV Total energy + Delta-G solvation = -3063.697556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70095 -37.72304 -35.51192 -35.18524 -34.16967 -31.58428 -30.07465 -29.50226 -28.00413 -27.26750 -25.87227 -23.12131 -22.52736 -21.26134 -19.81781 -19.15895 -17.78034 -17.52179 -16.21825 -15.35170 -14.84464 -14.54002 -14.34966 -13.93174 -13.62607 -13.27255 -13.01804 -12.93813 -12.72339 -12.63442 -12.17968 -11.98577 -11.93750 -11.80456 -11.61308 -11.34801 -11.32930 -11.27279 -11.10250 -10.96423 -10.63711 -10.36246 -9.96090 -9.84691 -9.60878 -9.00178 -8.25110 -7.85700 -7.37275 -7.11898 -4.82022 1.57281 2.54528 2.61687 2.88313 2.90357 2.94559 3.00626 3.38063 3.66312 3.84549 4.14962 4.39527 4.70917 5.02417 5.12791 5.21474 5.30051 5.34451 5.37955 5.56768 5.72931 5.77409 5.79080 5.89524 5.98228 6.07604 6.24625 6.29965 6.32230 6.50891 6.63992 6.78467 6.86326 7.05373 7.18692 7.27502 7.50216 7.57676 7.60608 7.77410 8.10531 8.22153 8.34423 8.42164 8.74566 9.70538 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.005878 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.021849 B = 4762.588843 C = 6138.212655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 C -0.154 4.154 4 N -0.365 5.365 5 N -0.309 5.309 6 C 0.037 3.963 7 C -0.265 4.265 8 C 0.148 3.852 9 C -0.008 4.008 10 C -0.250 4.250 11 C -0.026 4.026 12 C -0.181 4.181 13 C 0.299 3.701 14 N -0.507 5.507 15 C 0.148 3.852 16 C -0.424 4.424 17 H 0.087 0.913 18 C 0.074 3.926 19 N -0.764 5.764 20 Si 0.917 3.083 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.258 1.258 24 C -0.119 4.119 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.175 0.825 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.292 0.708 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 8.996 3.538 9.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.212 4.212 4 N -0.149 5.149 5 N -0.130 5.130 6 C -0.148 4.148 7 C -0.294 4.294 8 C 0.022 3.978 9 C -0.011 4.011 10 C -0.270 4.270 11 C -0.046 4.046 12 C -0.188 4.188 13 C -0.011 4.011 14 N -0.186 5.186 15 C 0.142 3.858 16 C -0.451 4.451 17 H 0.105 0.895 18 C -0.148 4.148 19 N -0.387 5.387 20 Si 0.740 3.260 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.139 4.139 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.192 0.808 33 H 0.167 0.833 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.865 9.084 2.243 9.786 hybrid contribution 0.866 -1.066 0.672 1.529 sum -2.000 8.018 2.915 8.763 Atomic orbital electron populations 1.22233 0.94218 1.03067 1.02731 1.21522 0.94771 0.93990 0.85223 1.22016 1.01797 0.94632 1.02750 1.48985 1.49282 1.10316 1.06338 1.77106 1.24695 1.23233 0.87990 1.23580 0.99375 0.92218 0.99600 1.21489 1.14225 1.01679 0.91970 1.20048 0.96773 0.85506 0.95482 1.17879 0.97665 0.94636 0.90947 1.20348 1.05176 1.05527 0.95948 1.20338 0.94850 0.92995 0.96467 1.17018 1.04784 1.02191 0.94785 1.25773 0.91449 0.91967 0.91891 1.81028 1.11696 1.12501 1.13357 1.18356 0.88658 0.90200 0.88565 1.19808 1.15842 1.15516 0.93945 0.89518 1.26092 0.97920 0.95974 0.94862 1.69667 1.34399 1.34958 0.99637 0.86120 0.80533 0.79773 0.79618 1.18628 1.19652 1.18128 1.21464 0.98778 0.93441 1.00264 0.91775 0.90944 0.91620 0.86729 0.92160 0.91206 0.91312 0.80794 0.83281 0.87754 0.88003 0.89619 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.03 37.16 0.34 -1.64 16 2 C 0.15 2.03 2.83 -67.93 -0.19 1.84 16 3 C -0.15 -1.83 9.21 37.16 0.34 -1.49 16 4 N -0.37 -6.22 3.41 -50.96 -0.17 -6.39 16 5 N -0.31 -5.29 12.09 30.55 0.37 -4.92 16 6 C 0.04 0.59 11.98 -17.49 -0.21 0.38 16 7 C -0.26 -4.75 10.18 -39.69 -0.40 -5.16 16 8 C 0.15 2.79 6.65 -82.48 -0.55 2.24 16 9 C -0.01 -0.17 5.76 -105.09 -0.61 -0.77 16 10 C -0.25 -4.67 8.23 -39.14 -0.32 -4.99 16 11 C -0.03 -0.50 9.74 -39.28 -0.38 -0.88 16 12 C -0.18 -3.99 5.95 -104.10 -0.62 -4.61 16 13 C 0.30 6.79 14.30 -22.47 -0.32 6.47 16 14 N -0.51 -11.90 18.54 41.84 0.78 -11.13 16 15 C 0.15 3.43 5.73 -104.68 -0.60 2.83 16 16 C -0.42 -9.98 8.57 -37.85 -0.32 -10.30 16 17 H 0.09 2.07 7.38 -52.49 -0.39 1.69 16 18 C 0.07 1.62 5.25 -17.30 -0.09 1.53 16 19 N -0.76 -16.77 10.78 55.56 0.60 -16.17 16 20 Si 0.92 16.79 29.58 -169.99 -5.03 11.76 16 21 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 22 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 23 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 24 C -0.12 -2.62 8.18 -38.50 -0.31 -2.94 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.86 7.16 -51.93 -0.37 0.49 16 28 H 0.12 1.63 5.47 -51.93 -0.28 1.34 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 32 H 0.18 2.13 8.06 -52.48 -0.42 1.71 16 33 H 0.15 2.64 7.88 -52.49 -0.41 2.22 16 34 H 0.10 1.69 4.19 -52.49 -0.22 1.47 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.29 5.76 8.30 -40.82 -0.34 5.42 16 37 H 0.14 3.10 5.65 -52.48 -0.30 2.80 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -25.71 320.06 -6.95 -32.67 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.06 Total: 6.84 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.26 Total: -17.48 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 1.57 Total: -38.61 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.71 -6.95 -32.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242556557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.788 kcal (2) G-P(sol) polarization free energy of solvation -25.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds