Wall clock time and date at job start Fri Apr 10 2020 14:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 N 1.46503 * 109.47258 * 119.99548 * 2 1 3 5 5 N 1.40070 * 126.14910 * 283.05009 * 4 2 1 6 6 C 1.30906 * 108.51993 * 180.26853 * 5 4 2 7 7 C 1.39459 * 108.61344 * 359.74446 * 6 5 4 8 8 C 1.36339 * 126.13994 * 102.86896 * 4 2 1 9 9 C 1.47869 * 126.35014 * 0.02562 * 8 4 2 10 10 C 1.39986 * 119.55439 * 332.44592 * 9 8 4 11 11 C 1.37648 * 121.15291 * 180.02562 * 10 9 8 12 12 C 1.39614 * 120.20785 * 0.02562 * 11 10 9 13 13 C 1.43205 * 120.43956 * 179.97438 * 12 11 10 14 14 N 7.59851 * 101.92436 * 213.46055 * 2 1 3 15 15 C 1.46563 * 119.12632 * 0.22748 * 12 11 10 16 16 C 1.40851 * 120.54696 * 179.74339 * 15 12 11 17 17 H 1.07993 * 119.99729 * 26.22037 * 16 15 12 18 18 C 1.40224 * 119.99957 * 206.20829 * 16 15 12 19 19 N 1.30670 * 119.99827 * 12.30792 * 18 16 15 20 20 Si 1.86800 * 120.00369 * 192.30209 * 18 16 15 21 21 H 1.48499 * 109.46850 * 90.00280 * 20 18 16 22 22 H 1.48495 * 109.47407 * 210.00488 * 20 18 16 23 23 H 1.48508 * 109.46832 * 330.00637 * 20 18 16 24 24 C 1.38807 * 119.55865 * 152.46782 * 9 8 4 25 25 H 1.09007 * 109.47142 * 300.00210 * 1 2 3 26 26 H 1.08999 * 109.47102 * 60.00028 * 1 2 3 27 27 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47019 * 239.99753 * 2 1 3 29 29 H 1.08999 * 109.46518 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46659 * 299.99413 * 3 2 1 31 31 H 1.08996 * 109.46959 * 60.00201 * 3 2 1 32 32 H 1.08005 * 125.69063 * 179.72263 * 6 5 4 33 33 H 1.08002 * 126.07145 * 180.02562 * 7 6 5 34 34 H 1.07993 * 119.42300 * 0.02562 * 10 9 8 35 35 H 1.07996 * 119.89628 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99925 * 184.98091 * 19 18 16 37 37 H 1.08003 * 120.13601 * 359.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 7 2.0530 -0.1683 2.4955 6 6 2.5586 -1.0738 3.2942 7 6 2.8617 -2.2097 2.5442 8 6 2.5176 -1.9583 1.2454 9 6 2.6659 -2.8867 0.1040 10 6 1.8062 -2.7728 -0.9949 11 6 1.9146 -3.6198 -2.0745 12 6 2.8928 -4.6158 -2.0905 13 6 3.0096 -5.5000 -3.2109 14 7 3.1000 -6.2024 -4.0991 15 6 3.7950 -4.7482 -0.9431 16 6 4.7890 -5.7459 -0.9254 17 1 5.1854 -6.1297 -1.8538 18 6 5.2642 -6.2406 0.2976 19 7 4.6300 -5.9622 1.4056 20 14 6.8037 -7.2976 0.3429 21 1 7.9957 -6.4289 0.5150 22 1 6.7170 -8.2500 1.4790 23 1 6.9221 -8.0543 -0.9294 24 6 3.6553 -3.8596 0.1369 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.7153 -0.9599 4.3568 33 1 3.2914 -3.1255 2.9224 34 1 1.0447 -2.0071 -0.9956 35 1 1.2403 -3.5140 -2.9114 36 1 4.9974 -6.2428 2.2584 37 1 4.3120 -3.9365 0.9909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242556557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:47 Heat of formation + Delta-G solvation = 99.100002 kcal Electronic energy + Delta-G solvation = -21050.528676 eV Core-core repulsion = 17986.353252 eV Total energy + Delta-G solvation = -3064.175424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03563 -39.35508 -37.01987 -36.60121 -35.77714 -33.12130 -31.71018 -30.76886 -29.48214 -28.24436 -27.51085 -24.62472 -23.83204 -22.82083 -21.20355 -20.48348 -19.38270 -19.09466 -17.71669 -16.86338 -16.06669 -15.93258 -15.71512 -15.41495 -14.93417 -14.76616 -14.56300 -14.53543 -14.16256 -13.82508 -13.62208 -13.47978 -13.23663 -13.11805 -13.06160 -12.85201 -12.80832 -12.67065 -12.33094 -12.24908 -12.02566 -11.91022 -11.51244 -11.29401 -11.21092 -10.42327 -9.61421 -9.51616 -8.95388 -8.71993 -6.55527 -0.02778 0.96741 1.15460 1.38591 1.49536 1.51908 1.65787 1.97874 2.03941 2.14642 2.49120 2.68858 3.56223 3.61352 3.63071 3.78964 4.01777 4.13571 4.26367 4.33983 4.58006 4.61893 4.73144 4.74675 4.84242 4.88544 4.92987 4.97685 5.05587 5.18806 5.26783 5.27498 5.31417 5.42727 5.67223 5.89598 5.90072 5.96999 6.07797 6.22037 6.43006 6.64767 6.72728 6.88709 6.96091 8.10381 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.005878 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.021849 B = 4762.588843 C = 6138.212655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 C -0.147 4.147 4 N -0.363 5.363 5 N -0.315 5.315 6 C 0.040 3.960 7 C -0.274 4.274 8 C 0.122 3.878 9 C -0.003 4.003 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.200 4.200 13 C 0.305 3.695 14 N -0.528 5.528 15 C 0.129 3.871 16 C -0.458 4.458 17 H 0.071 0.929 18 C 0.045 3.955 19 N -0.784 5.784 20 Si 0.976 3.024 21 H -0.253 1.253 22 H -0.260 1.260 23 H -0.270 1.270 24 C -0.139 4.139 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.211 0.789 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.302 0.698 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 10.598 3.956 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 C -0.205 4.205 4 N -0.147 5.147 5 N -0.136 5.136 6 C -0.144 4.144 7 C -0.303 4.303 8 C -0.005 4.005 9 C -0.006 4.006 10 C -0.258 4.258 11 C -0.040 4.040 12 C -0.207 4.207 13 C -0.003 4.003 14 N -0.207 5.207 15 C 0.124 3.876 16 C -0.486 4.486 17 H 0.089 0.911 18 C -0.176 4.176 19 N -0.407 5.407 20 Si 0.797 3.203 21 H -0.177 1.177 22 H -0.184 1.184 23 H -0.194 1.194 24 C -0.160 4.160 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.227 0.773 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.771 10.709 2.656 11.660 hybrid contribution 1.039 -1.428 0.579 1.859 sum -2.732 9.281 3.235 10.202 Atomic orbital electron populations 1.22204 0.92504 1.02714 1.04152 1.21874 0.96135 0.94799 0.83929 1.21986 1.00957 0.93452 1.04080 1.49286 1.48634 1.09658 1.07109 1.77083 1.24750 1.23571 0.88218 1.24099 0.98230 0.90931 1.01091 1.21642 1.14117 1.02262 0.92261 1.20000 0.98519 0.86532 0.95426 1.18068 0.96806 0.93990 0.91708 1.20696 1.04831 1.05423 0.94880 1.20661 0.94154 0.91718 0.97490 1.17243 1.05824 1.03231 0.94389 1.25957 0.90896 0.91717 0.91767 1.81010 1.12475 1.13106 1.14144 1.18608 0.89064 0.90505 0.89468 1.19870 1.17580 1.16975 0.94172 0.91105 1.26691 1.00056 0.96669 0.94173 1.69672 1.35339 1.35544 1.00151 0.85253 0.77599 0.78354 0.79116 1.17737 1.18423 1.19447 1.21343 0.99961 0.94586 1.00064 0.92202 0.87706 0.92772 0.87064 0.93415 0.88047 0.91783 0.77280 0.83835 0.84824 0.84925 0.88673 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.03 71.98 0.65 -2.65 16 2 C 0.13 3.36 2.83 44.99 0.13 3.49 16 3 C -0.15 -3.10 9.21 71.98 0.66 -2.44 16 4 N -0.36 -11.75 3.41 -315.15 -1.08 -12.83 16 5 N -0.31 -10.17 12.09 -57.25 -0.69 -10.86 16 6 C 0.04 1.22 11.98 85.13 1.02 2.24 16 7 C -0.27 -9.67 10.18 22.20 0.23 -9.44 16 8 C 0.12 4.51 6.65 40.63 0.27 4.78 16 9 C 0.00 -0.11 5.76 -20.17 -0.12 -0.23 16 10 C -0.24 -8.51 8.23 22.55 0.19 -8.32 16 11 C -0.02 -0.73 9.74 22.46 0.22 -0.51 16 12 C -0.20 -8.87 5.95 -19.53 -0.12 -8.98 16 13 C 0.31 14.03 14.30 88.33 1.26 15.29 16 14 N -0.53 -25.02 18.54 19.00 0.35 -24.66 16 15 C 0.13 6.16 5.73 -19.90 -0.11 6.05 16 16 C -0.46 -22.43 8.57 23.39 0.20 -22.23 16 17 H 0.07 3.57 7.38 -2.91 -0.02 3.54 16 18 C 0.04 2.00 5.25 85.35 0.45 2.45 16 19 N -0.78 -35.13 10.78 21.87 0.24 -34.90 16 20 Si 0.98 34.89 29.58 68.60 2.03 36.92 16 21 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 22 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 23 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 24 C -0.14 -6.27 8.18 22.97 0.19 -6.08 16 25 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.26 7.16 -2.39 -0.02 1.24 16 28 H 0.11 2.87 5.47 -2.39 -0.01 2.85 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 32 H 0.21 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.14 5.14 7.88 -2.91 -0.02 5.12 16 34 H 0.13 3.96 4.19 -2.91 -0.01 3.94 16 35 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.30 12.00 8.30 -92.70 -0.77 11.23 16 37 H 0.13 5.91 5.65 -2.91 -0.02 5.90 16 Total: -1.00 -56.17 320.06 7.07 -49.10 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 1.10 Total: 23.82 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 5.11 Total: -26.60 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.18 Total: -83.25 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -56.17 7.07 -49.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242556557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.205 kcal (2) G-P(sol) polarization free energy of solvation -56.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds