Wall clock time and date at job start Fri Apr 10 2020 14:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 H 1.09002 * 109.47179 * 54.22451 * 3 2 1 5 5 C 1.50695 * 109.47147 * 174.22117 * 3 2 1 6 6 H 1.08006 * 119.99978 * 120.00338 * 5 3 2 7 7 C 1.37871 * 120.00457 * 299.72696 * 5 3 2 8 8 N 1.31518 * 119.99662 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00304 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47234 * 90.00363 * 9 7 5 11 11 H 1.48505 * 109.46971 * 210.00014 * 9 7 5 12 12 H 1.48494 * 109.47136 * 329.99847 * 9 7 5 13 13 N 1.46897 * 109.47480 * 294.22780 * 3 2 1 14 14 C 1.46893 * 111.00489 * 100.40910 * 13 3 2 15 15 H 1.08996 * 109.47195 * 336.03035 * 14 13 3 16 16 C 1.53002 * 109.47030 * 96.02902 * 14 13 3 17 17 C 1.53001 * 109.47127 * 294.70308 * 16 14 13 18 18 C 1.50700 * 109.47484 * 216.02871 * 14 13 3 19 19 C 1.38234 * 120.00614 * 340.00278 * 18 14 13 20 20 C 1.38220 * 120.01627 * 180.02562 * 19 18 14 21 21 C 1.38270 * 120.02568 * 0.02562 * 20 19 18 22 22 C 1.38198 * 120.00840 * 359.97438 * 21 20 19 23 23 C 1.38326 * 120.00811 * 159.72537 * 18 14 13 24 24 Cl 1.73603 * 120.01500 * 359.97438 * 23 18 14 25 25 H 1.09002 * 109.47137 * 305.83996 * 1 2 3 26 26 H 1.09000 * 109.47454 * 65.84028 * 1 2 3 27 27 H 1.08998 * 109.46905 * 185.84014 * 1 2 3 28 28 H 1.09001 * 109.46962 * 240.00646 * 2 1 3 29 29 H 1.08999 * 109.47423 * 120.00382 * 2 1 3 30 30 H 0.97006 * 119.99870 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99517 * 336.45281 * 13 3 2 32 32 H 1.09005 * 109.47002 * 54.70635 * 16 14 13 33 33 H 1.09005 * 109.47038 * 174.69858 * 16 14 13 34 34 H 1.09002 * 109.46545 * 185.61677 * 17 16 14 35 35 H 1.09001 * 109.46984 * 305.61373 * 17 16 14 36 36 H 1.09000 * 109.47016 * 65.61734 * 17 16 14 37 37 H 1.08007 * 119.99516 * 359.97438 * 19 18 14 38 38 H 1.08001 * 119.98848 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.99432 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.00399 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5947 1.9853 0.8338 5 6 3.5401 1.4449 0.1431 6 1 4.1554 1.8860 -0.6273 7 6 4.1271 0.8891 1.2599 8 7 3.3777 0.3572 2.2008 9 14 5.9867 0.8915 1.4369 10 1 6.4161 2.1306 2.1335 11 1 6.4102 -0.2926 2.2268 12 1 6.6120 0.8381 0.0911 13 7 1.6674 2.0937 -1.2629 14 6 0.4841 2.9460 -1.0868 15 1 -0.0908 2.5968 -0.2291 16 6 0.9272 4.3911 -0.8496 17 6 1.6841 4.4812 0.4771 18 6 -0.3716 2.8799 -2.3256 19 6 0.1761 2.4569 -3.5223 20 6 -0.6084 2.3968 -4.6587 21 6 -1.9412 2.7601 -4.5995 22 6 -2.4898 3.1831 -3.4036 23 6 -1.7065 3.2370 -2.2642 24 17 -2.3970 3.7608 -0.7599 25 1 -0.3633 0.6017 0.8331 26 1 -0.3634 0.4206 -0.9376 27 1 -0.3633 -1.0223 0.1046 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7907 -0.0342 2.9864 31 1 1.5165 1.4113 -1.9907 32 1 1.5799 4.7091 -1.6627 33 1 0.0509 5.0384 -0.8128 34 1 1.9127 5.5245 0.6947 35 1 1.0670 4.0701 1.2760 36 1 2.6117 3.9132 0.4054 37 1 1.2174 2.1742 -3.5695 38 1 -0.1800 2.0666 -5.5935 39 1 -2.5536 2.7133 -5.4878 40 1 -3.5309 3.4665 -3.3573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:18 Heat of formation + Delta-G solvation = -7.163675 kcal Electronic energy + Delta-G solvation = -20674.025122 eV Core-core repulsion = 17706.349253 eV Total energy + Delta-G solvation = -2967.675869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77064 -38.46678 -37.34698 -35.53931 -33.65703 -32.20318 -31.59045 -31.04535 -28.61093 -26.28537 -24.53420 -23.49616 -23.09232 -21.51554 -21.12544 -18.54874 -17.90664 -17.07089 -16.56424 -16.31321 -15.77149 -15.27512 -15.07322 -14.89212 -14.72447 -14.59529 -14.02343 -13.87080 -13.62694 -13.19262 -13.11052 -12.88335 -12.70072 -12.55591 -12.43660 -12.42324 -12.18468 -12.02520 -11.85027 -11.82429 -11.56330 -11.44367 -11.30030 -10.87730 -10.35504 -9.78877 -9.55600 -8.87977 -8.00819 -6.09670 0.24928 0.37153 1.23494 1.43975 1.45693 1.55056 2.48311 2.73615 3.26040 3.57347 3.74370 3.99321 4.15842 4.34798 4.35126 4.43387 4.46269 4.51608 4.52115 4.65074 4.70210 4.81121 4.88545 5.03137 5.04303 5.11717 5.15097 5.21031 5.32285 5.37714 5.42285 5.47074 5.54085 5.63752 5.70358 5.80441 5.93184 5.95199 6.41397 6.75194 6.92648 7.04464 7.58898 9.03218 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.005303 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.079510 B = 5278.346332 C = 5467.742036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 C 0.229 3.771 4 H 0.008 0.992 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.675 5.675 14 C 0.128 3.872 15 H 0.044 0.956 16 C -0.090 4.090 17 C -0.143 4.143 18 C -0.088 4.088 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.049 4.049 24 Cl -0.080 7.080 25 H 0.032 0.968 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.257 0.743 31 H 0.330 0.670 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.029 0.971 36 H 0.055 0.945 37 H 0.136 0.864 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 5.163 -12.656 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.183 4.183 3 C 0.120 3.880 4 H 0.026 0.974 5 C -0.536 4.536 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.307 5.307 14 C 0.018 3.982 15 H 0.061 0.939 16 C -0.129 4.129 17 C -0.200 4.200 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.075 4.075 24 Cl -0.051 7.051 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.394 5.642 -12.265 17.666 hybrid contribution 0.380 -0.801 1.059 1.381 sum -11.014 4.841 -11.206 16.441 Atomic orbital electron populations 1.21709 0.97020 1.00388 0.99855 1.22091 0.93678 1.01303 1.01199 1.19029 0.93859 0.88787 0.86290 0.97415 1.21452 0.92787 1.35397 1.03958 0.92937 1.25603 1.01583 0.95675 0.95867 1.70011 1.35939 1.40660 1.09637 0.85688 0.81635 0.77107 0.77930 1.20749 1.21401 1.19478 1.60888 1.34260 1.26184 1.09323 1.20508 0.89364 0.95156 0.93154 0.93852 1.21375 0.99254 0.94579 0.97644 1.21699 1.01033 1.00688 0.96578 1.20072 0.92573 0.99609 0.96641 1.21236 1.01176 0.99170 0.91707 1.21586 0.94174 0.98252 0.98729 1.21483 0.95514 0.97877 0.97852 1.21308 1.00656 1.00263 0.91013 1.20984 0.93507 1.04871 0.88185 1.98355 1.84398 1.89033 1.33331 0.94896 0.93544 0.93089 0.94676 0.91448 0.93377 0.85029 0.91990 0.91872 0.92439 0.95156 0.92622 0.84641 0.82794 0.81929 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.71 71.98 0.63 -4.64 16 2 C -0.14 -6.72 5.11 30.59 0.16 -6.57 16 3 C 0.23 11.12 1.07 44.17 0.05 11.17 16 4 H 0.01 0.44 5.95 -2.39 -0.01 0.42 16 5 C -0.50 -26.91 8.06 25.60 0.21 -26.70 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.57 5.29 84.65 0.45 1.02 16 8 N -0.92 -52.91 11.31 21.45 0.24 -52.67 16 9 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 13 N -0.67 -27.34 5.31 -477.19 -2.54 -29.87 16 14 C 0.13 4.60 0.88 44.17 0.04 4.64 16 15 H 0.04 1.74 5.49 -2.39 -0.01 1.73 16 16 C -0.09 -3.15 5.53 30.60 0.17 -2.98 16 17 C -0.14 -5.53 8.62 71.98 0.62 -4.91 16 18 C -0.09 -2.62 4.76 -19.84 -0.09 -2.72 16 19 C -0.11 -2.99 8.84 22.26 0.20 -2.80 16 20 C -0.11 -2.13 10.05 22.27 0.22 -1.90 16 21 C -0.11 -1.88 10.05 22.27 0.22 -1.65 16 22 C -0.11 -2.36 9.83 22.29 0.22 -2.14 16 23 C -0.05 -1.31 6.31 22.32 0.14 -1.17 16 24 Cl -0.08 -2.23 26.68 -2.72 -0.07 -2.30 16 25 H 0.03 1.35 7.92 -2.39 -0.02 1.34 16 26 H 0.05 1.70 6.88 -2.39 -0.02 1.68 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.03 1.59 8.02 -2.39 -0.02 1.57 16 29 H 0.07 3.63 5.96 -2.39 -0.01 3.62 16 30 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 31 H 0.33 12.55 5.63 -89.69 -0.51 12.05 16 32 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.06 2.00 7.34 -2.38 -0.02 1.98 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.03 1.22 7.79 -2.39 -0.02 1.20 16 36 H 0.05 2.54 6.28 -2.39 -0.01 2.52 16 37 H 0.14 3.69 6.47 -2.91 -0.02 3.67 16 38 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 40 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -59.74 325.71 3.41 -56.33 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.53 Total: 23.69 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 3.22 Total: -41.34 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.29 Total: -82.54 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.07 Total: -2.30 kcal Total: -59.74 3.41 -56.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.166 kcal (2) G-P(sol) polarization free energy of solvation -59.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds