Wall clock time and date at job start Fri Apr 10 2020 14:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47147 * 2 1 4 4 H 1.09000 * 109.46968 * 54.99871 * 3 2 1 5 5 C 1.50704 * 109.46882 * 175.00291 * 3 2 1 6 6 H 1.07996 * 119.99792 * 119.72847 * 5 3 2 7 7 C 1.37874 * 119.99610 * 299.99421 * 5 3 2 8 8 N 1.31516 * 120.00285 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99898 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46947 * 90.00148 * 9 7 5 11 11 H 1.48497 * 109.47686 * 210.00577 * 9 7 5 12 12 H 1.48499 * 109.47269 * 330.00662 * 9 7 5 13 13 N 1.46496 * 109.47196 * 295.00045 * 3 2 1 14 14 C 1.34777 * 120.00054 * 84.99857 * 13 3 2 15 15 O 1.21582 * 120.00057 * 359.97438 * 14 13 3 16 16 N 1.34783 * 119.99992 * 180.02562 * 14 13 3 17 17 C 1.40054 * 119.99659 * 175.38514 * 16 14 13 18 18 C 1.38879 * 120.00888 * 214.81819 * 17 16 14 19 19 C 1.38204 * 120.08860 * 179.76929 * 18 17 16 20 20 C 1.38295 * 120.11764 * 0.50919 * 19 18 17 21 21 F 1.35098 * 119.98947 * 179.72366 * 20 19 18 22 22 C 1.39106 * 120.02388 * 359.74348 * 20 19 18 23 23 N 1.39838 * 120.04135 * 180.02562 * 22 20 19 24 24 C 1.38739 * 119.91184 * 0.02562 * 22 20 19 25 25 H 1.09000 * 109.46710 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46962 * 299.99872 * 1 2 3 27 27 H 1.08997 * 109.47007 * 60.00339 * 1 2 3 28 28 H 1.09006 * 109.46828 * 239.99829 * 2 1 3 29 29 H 1.08998 * 109.47013 * 120.00218 * 2 1 3 30 30 H 0.97002 * 119.99842 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00134 * 265.00218 * 13 3 2 32 32 H 0.96993 * 119.99726 * 355.38189 * 16 14 13 33 33 H 1.08001 * 119.95409 * 0.02562 * 18 17 16 34 34 H 1.08004 * 119.94406 * 180.25613 * 19 18 17 35 35 H 0.97001 * 119.99165 * 179.97438 * 23 22 20 36 36 H 0.96991 * 119.99958 * 359.97438 * 23 22 20 37 37 H 1.07998 * 120.06045 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1474 1.8849 -0.6545 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8811 1.3818 10 1 6.4417 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6136 0.8415 0.0278 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4321 16 7 0.0784 3.2666 -2.5188 17 6 -1.2193 3.7703 -2.6729 18 6 -1.8412 3.7197 -3.9135 19 6 -3.1236 4.2120 -4.0664 20 6 -3.7874 4.7660 -2.9870 21 9 -5.0387 5.2515 -3.1406 22 6 -3.1670 4.8239 -1.7433 23 7 -3.8381 5.3835 -0.6516 24 6 -1.8815 4.3257 -1.5876 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0617 2.9495 31 1 2.2719 2.1231 -1.9977 32 1 0.7204 3.3510 -3.2409 33 1 -1.3237 3.2913 -4.7592 34 1 -3.6066 4.1677 -5.0313 35 1 -3.4049 5.4232 0.2154 36 1 -4.7366 5.7319 -0.7614 37 1 -1.3974 4.3698 -0.6232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325640730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:27 Heat of formation + Delta-G solvation = -72.501314 kcal Electronic energy + Delta-G solvation = -21799.196974 eV Core-core repulsion = 18296.811134 eV Total energy + Delta-G solvation = -3502.385840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.67362 -41.57240 -39.73175 -37.23551 -36.10635 -34.74685 -34.21820 -32.67128 -30.45825 -29.41585 -28.53160 -25.12160 -24.17454 -23.19248 -22.12325 -21.33366 -19.86446 -18.92057 -18.47643 -18.08356 -17.69213 -17.02373 -16.57175 -16.42656 -16.31988 -15.94262 -15.62063 -15.14855 -14.56696 -14.54539 -14.32612 -13.98092 -13.61923 -13.59107 -13.46453 -13.15247 -12.84660 -12.67793 -12.34927 -12.13385 -12.03857 -11.98953 -11.54940 -11.05639 -10.95049 -10.79211 -10.51271 -9.67534 -9.12164 -8.43574 -8.13863 -6.30722 0.26337 0.52628 1.47102 1.47455 1.57689 1.81902 2.24362 2.44251 2.82054 2.87966 3.16036 3.41963 3.53120 3.91769 4.30965 4.38680 4.52744 4.60495 4.63851 4.75473 4.82971 5.07777 5.16157 5.25717 5.31048 5.41528 5.47051 5.52133 5.57485 5.64021 5.80258 5.90549 5.98476 6.19812 6.33356 6.44689 6.77709 6.84373 7.30333 7.38017 7.76533 8.91406 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.034667 B = 0.003633 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.498272 B = 7706.017318 C = 7850.090434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.260 1.260 13 N -0.714 5.714 14 C 0.692 3.308 15 O -0.610 6.610 16 N -0.676 5.676 17 C 0.200 3.800 18 C -0.174 4.174 19 C -0.077 4.077 20 C -0.026 4.026 21 F -0.150 7.150 22 C 0.200 3.800 23 N -0.866 5.866 24 C -0.200 4.200 25 H 0.041 0.959 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.423 0.577 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.407 0.593 36 H 0.407 0.593 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 7.575 -13.196 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.367 5.367 14 C 0.392 3.608 15 O -0.490 6.490 16 N -0.325 5.325 17 C 0.103 3.897 18 C -0.196 4.196 19 C -0.097 4.097 20 C -0.050 4.050 21 F -0.130 7.130 22 C 0.092 3.908 23 N -0.407 5.407 24 C -0.226 4.226 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.261 0.739 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.236 0.764 36 H 0.237 0.763 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.970 7.392 -12.156 17.372 hybrid contribution 1.012 0.165 0.464 1.126 sum -8.958 7.557 -11.691 16.554 Atomic orbital electron populations 1.21635 0.97085 0.98796 1.00187 1.21806 0.93602 0.99350 1.01268 1.18261 0.93393 0.88780 0.80284 0.98175 1.21576 0.91372 1.38968 1.06588 0.90901 1.25732 1.03131 0.94402 0.95091 1.70050 1.37005 1.38336 1.09882 0.85392 0.79308 0.77305 0.78593 1.20567 1.21141 1.18403 1.45430 1.14083 1.58669 1.18489 1.16199 0.82965 0.78650 0.82969 1.90875 1.52653 1.65777 1.39665 1.42530 1.12632 1.60116 1.17263 1.17492 0.84521 0.93286 0.94354 1.20751 0.95309 1.06910 0.96677 1.20972 0.94203 0.96177 0.98313 1.17259 0.82491 1.11035 0.94242 1.91393 1.38423 1.86911 1.96229 1.17666 0.91664 0.93774 0.87660 1.42346 1.19862 1.68685 1.09782 1.20556 0.95032 1.06248 1.00747 0.94001 0.95618 0.93934 0.94040 0.91009 0.92646 0.76302 0.73882 0.82035 0.81646 0.76354 0.76277 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.51 71.98 0.61 -4.78 16 2 C -0.12 -5.86 5.45 30.60 0.17 -5.70 16 3 C 0.30 14.74 2.24 44.25 0.10 14.84 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 5 C -0.55 -28.02 8.73 25.60 0.22 -27.79 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.38 11.29 21.45 0.24 -51.14 16 9 Si 0.97 41.15 29.54 68.60 2.03 43.17 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 13 N -0.71 -27.98 5.03 -461.41 -2.32 -30.30 16 14 C 0.69 26.38 6.98 179.05 1.25 27.63 16 15 O -0.61 -28.08 10.91 -3.98 -0.04 -28.12 16 16 N -0.68 -18.77 5.35 -317.17 -1.70 -20.47 16 17 C 0.20 5.55 6.30 38.10 0.24 5.79 16 18 C -0.17 -3.59 9.96 22.42 0.22 -3.36 16 19 C -0.08 -1.55 10.01 22.28 0.22 -1.32 16 20 C -0.03 -0.63 7.31 22.49 0.16 -0.47 16 21 F -0.15 -3.63 16.63 44.97 0.75 -2.88 16 22 C 0.20 5.43 6.76 38.19 0.26 5.69 16 23 N -0.87 -19.41 9.09 -51.25 -0.47 -19.87 16 24 C -0.20 -6.26 8.54 22.51 0.19 -6.07 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.02 1.24 7.84 -2.39 -0.02 1.22 16 27 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 28 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.40 12.98 8.56 -92.71 -0.79 12.19 16 32 H 0.42 8.30 8.84 -92.71 -0.82 7.48 16 33 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.41 8.56 8.84 -92.71 -0.82 7.74 16 36 H 0.41 7.54 8.31 -92.71 -0.77 6.77 16 37 H 0.12 4.56 6.22 -2.91 -0.02 4.54 16 Total: -1.00 -66.08 311.47 0.55 -65.53 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -2.04 Total: 38.31 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 4.10 Total: 5.77 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -4.24 Total: -121.79 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.04 Total: -28.12 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.75 Total: -2.88 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -66.08 0.55 -65.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325640730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.968 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds