Wall clock time and date at job start Fri Apr 10 2020 14:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47370 * 2 1 4 4 C 1.50699 * 109.47225 * 120.00655 * 2 1 3 5 5 H 1.07997 * 120.00032 * 119.99432 * 4 2 1 6 6 C 1.37878 * 119.99787 * 299.99620 * 4 2 1 7 7 N 1.31516 * 119.99813 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47252 * 60.00205 * 8 6 4 10 10 H 1.48503 * 109.47411 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47264 * 300.00115 * 8 6 4 12 12 N 1.46901 * 109.46639 * 240.00788 * 2 1 3 13 13 C 1.46905 * 110.99901 * 183.95611 * 12 2 1 14 14 C 1.46893 * 111.00666 * 60.00068 * 12 2 1 15 15 C 1.53003 * 109.47543 * 190.00167 * 14 12 2 16 16 H 1.09005 * 109.46581 * 304.99827 * 15 14 12 17 17 C 1.52996 * 109.47073 * 64.99512 * 15 14 12 18 18 C 1.50694 * 109.47151 * 185.00086 * 15 14 12 19 19 C 1.38265 * 119.99277 * 300.01525 * 18 15 14 20 20 C 1.38216 * 120.02667 * 180.02562 * 19 18 15 21 21 C 1.38234 * 120.01494 * 359.96105 * 20 19 18 22 22 C 1.38328 * 119.98526 * 359.76620 * 21 20 19 23 23 Cl 1.73604 * 120.01692 * 180.27839 * 22 21 20 24 24 C 1.38195 * 119.99579 * 120.00131 * 18 15 14 25 25 H 1.08992 * 109.47370 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46637 * 299.99755 * 1 2 3 27 27 H 1.09001 * 109.47009 * 59.99080 * 1 2 3 28 28 H 0.97000 * 119.99624 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.46943 * 296.04333 * 13 12 2 30 30 H 1.09000 * 109.46842 * 56.03906 * 13 12 2 31 31 H 1.08998 * 109.47200 * 176.04203 * 13 12 2 32 32 H 1.09003 * 109.47373 * 69.99402 * 14 12 2 33 33 H 1.09008 * 109.47037 * 309.99790 * 14 12 2 34 34 H 1.08998 * 109.47012 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.47475 * 300.00110 * 17 15 14 36 36 H 1.09005 * 109.47160 * 60.00669 * 17 15 14 37 37 H 1.08007 * 119.98705 * 359.97438 * 19 18 15 38 38 H 1.08001 * 119.99346 * 179.97438 * 20 19 18 39 39 H 1.08007 * 120.00805 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00237 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1207 4.0078 9 1 3.8064 -1.1213 4.0080 10 1 1.8271 -0.4203 5.2204 11 1 1.8258 -2.5206 4.0075 12 7 2.0196 -0.6924 -1.1996 13 6 3.4850 -0.7945 -1.1873 14 6 1.5486 -0.0262 -2.4211 15 6 1.8625 -0.9040 -3.6343 16 1 2.9274 -1.1363 -3.6489 17 6 1.0585 -2.2027 -3.5458 18 6 1.4915 -0.1685 -4.8961 19 6 0.1848 0.2332 -5.1031 20 6 -0.1564 0.9075 -6.2604 21 6 0.8088 1.1814 -7.2113 22 6 2.1174 0.7847 -7.0022 23 17 3.3317 1.1347 -8.1925 24 6 2.4573 0.1048 -5.8459 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 0.7089 1.1610 3.4844 29 1 3.9192 0.2043 -1.2302 30 1 3.8069 -1.2915 -0.2721 31 1 3.8163 -1.3720 -2.0502 32 1 2.0518 0.9348 -2.5280 33 1 0.4721 0.1326 -2.3564 34 1 1.2825 -2.8283 -4.4098 35 1 1.3269 -2.7348 -2.6331 36 1 -0.0064 -1.9705 -3.5312 37 1 -0.5699 0.0193 -4.3606 38 1 -1.1774 1.2206 -6.4218 39 1 0.5422 1.7086 -8.1154 40 1 3.4780 -0.2092 -5.6841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187181091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:23 Heat of formation + Delta-G solvation = 12.922276 kcal Electronic energy + Delta-G solvation = -19817.395274 eV Core-core repulsion = 16850.590398 eV Total energy + Delta-G solvation = -2966.804877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71531 -37.44780 -36.52770 -34.30986 -32.39443 -30.88441 -29.57061 -28.89006 -26.79916 -24.77527 -24.00452 -22.81649 -22.51104 -20.09904 -19.01347 -17.09298 -16.32717 -15.76448 -15.43231 -15.07599 -14.30754 -14.22108 -13.93661 -13.77896 -13.43730 -13.12234 -12.81126 -12.34382 -12.33610 -11.90468 -11.70698 -11.59018 -11.26517 -11.20425 -11.09821 -10.95866 -10.84115 -10.74803 -10.54265 -10.17772 -10.10554 -10.01780 -9.71255 -8.96571 -8.87618 -8.66498 -8.41932 -7.16249 -6.01232 -4.05775 1.10049 1.20887 2.01187 3.31775 3.36292 3.38935 3.56835 4.39486 4.60119 4.73213 4.95929 5.08886 5.21579 5.26759 5.32138 5.35275 5.53186 5.64287 5.73584 5.89316 6.08192 6.09318 6.14761 6.19596 6.28752 6.31818 6.37932 6.44816 6.63054 6.69740 6.76884 6.80444 6.86102 7.04960 7.16194 7.52395 7.72698 7.82581 8.20452 8.32474 8.60418 9.00574 9.59226 11.05577 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032841 B = 0.003452 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.375575 B = 8110.432618 C = 8386.761912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.060 3.940 15 C -0.052 4.052 16 H 0.078 0.922 17 C -0.131 4.131 18 C -0.051 4.051 19 C -0.108 4.108 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.033 4.033 23 Cl -0.080 7.080 24 C -0.111 4.111 25 H 0.034 0.966 26 H 0.084 0.916 27 H 0.007 0.993 28 H 0.261 0.739 29 H 0.009 0.991 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -0.698 -18.247 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.258 5.258 13 C -0.115 4.115 14 C -0.069 4.069 15 C -0.071 4.071 16 H 0.096 0.904 17 C -0.188 4.188 18 C -0.052 4.052 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.059 4.059 23 Cl -0.051 7.051 24 C -0.130 4.130 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.254 -1.020 -18.180 18.211 hybrid contribution 0.766 0.578 0.694 1.184 sum 0.512 -0.442 -17.486 17.499 Atomic orbital electron populations 1.21849 0.97794 0.99593 0.99793 1.19223 0.92270 0.91950 0.85888 0.98589 1.21123 1.31066 1.12278 0.89777 0.91878 1.24930 0.95216 0.95076 0.99007 1.69884 1.36882 1.23039 1.23491 0.86592 0.79067 0.79769 0.82144 1.20373 1.21396 1.20213 1.62105 1.09087 1.52558 1.02034 1.22268 0.89023 0.98744 1.01440 1.22151 1.00997 0.93893 0.89810 1.20273 1.00909 0.95450 0.90464 0.90394 1.21694 0.99360 0.95772 1.01960 1.20035 0.92921 0.96647 0.95564 1.21219 0.96382 0.97607 0.97401 1.21108 0.99246 0.98466 0.93617 1.20982 0.91187 1.01530 1.00450 1.20894 0.90182 1.02722 0.92140 1.98358 1.55828 1.93912 1.57012 1.20994 1.00274 0.99221 0.92465 0.94659 0.89722 0.97387 0.92953 0.97253 0.90467 0.93762 0.96191 0.90559 0.93917 0.90390 0.92980 0.85131 0.85214 0.85351 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.76 37.16 0.33 -2.83 16 2 C 0.21 5.28 2.06 -68.86 -0.14 5.14 16 3 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 4 C -0.50 -13.57 7.88 -34.44 -0.27 -13.84 16 5 H 0.06 1.68 6.41 -52.49 -0.34 1.35 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 N -0.53 -11.02 4.08 -236.28 -0.96 -11.99 16 13 C 0.03 0.65 9.05 60.07 0.54 1.19 16 14 C 0.06 1.05 3.90 -3.83 -0.01 1.04 16 15 C -0.05 -0.74 2.48 -91.77 -0.23 -0.97 16 16 H 0.08 1.10 6.07 -51.93 -0.32 0.79 16 17 C -0.13 -1.79 8.89 37.16 0.33 -1.46 16 18 C -0.05 -0.66 4.78 -104.63 -0.50 -1.16 16 19 C -0.11 -1.29 8.76 -39.58 -0.35 -1.64 16 20 C -0.11 -1.11 10.05 -39.59 -0.40 -1.50 16 21 C -0.12 -1.30 9.83 -39.55 -0.39 -1.69 16 22 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 23 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 24 C -0.11 -1.37 9.46 -39.55 -0.37 -1.74 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 27 H 0.01 0.16 6.20 -51.93 -0.32 -0.17 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 1.59 6.10 -51.93 -0.32 1.28 16 31 H 0.04 0.72 6.37 -51.93 -0.33 0.39 16 32 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.08 1.36 5.26 -51.92 -0.27 1.08 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.21 7.75 -51.93 -0.40 0.80 16 36 H 0.05 0.69 7.39 -51.93 -0.38 0.31 16 37 H 0.13 1.49 7.16 -52.48 -0.38 1.11 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.13 1.49 7.95 -52.49 -0.42 1.08 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -27.82 330.57 -9.57 -37.39 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.88 Total: -0.87 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.81 Total: -18.59 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.34 Total: -36.66 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.82 -9.57 -37.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187181091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.313 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds