Wall clock time and date at job start Fri Apr 10 2020 14:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47370 * 2 1 4 4 C 1.50699 * 109.47225 * 120.00655 * 2 1 3 5 5 H 1.07997 * 120.00032 * 119.99432 * 4 2 1 6 6 C 1.37878 * 119.99787 * 299.99620 * 4 2 1 7 7 N 1.31516 * 119.99813 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47252 * 60.00205 * 8 6 4 10 10 H 1.48503 * 109.47411 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47264 * 300.00115 * 8 6 4 12 12 N 1.46901 * 109.46639 * 240.00788 * 2 1 3 13 13 C 1.46905 * 110.99901 * 183.95611 * 12 2 1 14 14 C 1.46893 * 111.00666 * 60.00068 * 12 2 1 15 15 C 1.53003 * 109.47543 * 190.00167 * 14 12 2 16 16 H 1.09005 * 109.46581 * 304.99827 * 15 14 12 17 17 C 1.52996 * 109.47073 * 64.99512 * 15 14 12 18 18 C 1.50694 * 109.47151 * 185.00086 * 15 14 12 19 19 C 1.38265 * 119.99277 * 300.01525 * 18 15 14 20 20 C 1.38216 * 120.02667 * 180.02562 * 19 18 15 21 21 C 1.38234 * 120.01494 * 359.96105 * 20 19 18 22 22 C 1.38328 * 119.98526 * 359.76620 * 21 20 19 23 23 Cl 1.73604 * 120.01692 * 180.27839 * 22 21 20 24 24 C 1.38195 * 119.99579 * 120.00131 * 18 15 14 25 25 H 1.08992 * 109.47370 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46637 * 299.99755 * 1 2 3 27 27 H 1.09001 * 109.47009 * 59.99080 * 1 2 3 28 28 H 0.97000 * 119.99624 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.46943 * 296.04333 * 13 12 2 30 30 H 1.09000 * 109.46842 * 56.03906 * 13 12 2 31 31 H 1.08998 * 109.47200 * 176.04203 * 13 12 2 32 32 H 1.09003 * 109.47373 * 69.99402 * 14 12 2 33 33 H 1.09008 * 109.47037 * 309.99790 * 14 12 2 34 34 H 1.08998 * 109.47012 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.47475 * 300.00110 * 17 15 14 36 36 H 1.09005 * 109.47160 * 60.00669 * 17 15 14 37 37 H 1.08007 * 119.98705 * 359.97438 * 19 18 15 38 38 H 1.08001 * 119.99346 * 179.97438 * 20 19 18 39 39 H 1.08007 * 120.00805 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00237 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1207 4.0078 9 1 3.8064 -1.1213 4.0080 10 1 1.8271 -0.4203 5.2204 11 1 1.8258 -2.5206 4.0075 12 7 2.0196 -0.6924 -1.1996 13 6 3.4850 -0.7945 -1.1873 14 6 1.5486 -0.0262 -2.4211 15 6 1.8625 -0.9040 -3.6343 16 1 2.9274 -1.1363 -3.6489 17 6 1.0585 -2.2027 -3.5458 18 6 1.4915 -0.1685 -4.8961 19 6 0.1848 0.2332 -5.1031 20 6 -0.1564 0.9075 -6.2604 21 6 0.8088 1.1814 -7.2113 22 6 2.1174 0.7847 -7.0022 23 17 3.3317 1.1347 -8.1925 24 6 2.4573 0.1048 -5.8459 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 0.7089 1.1610 3.4844 29 1 3.9192 0.2043 -1.2302 30 1 3.8069 -1.2915 -0.2721 31 1 3.8163 -1.3720 -2.0502 32 1 2.0518 0.9348 -2.5280 33 1 0.4721 0.1326 -2.3564 34 1 1.2825 -2.8283 -4.4098 35 1 1.3269 -2.7348 -2.6331 36 1 -0.0064 -1.9705 -3.5312 37 1 -0.5699 0.0193 -4.3606 38 1 -1.1774 1.2206 -6.4218 39 1 0.5422 1.7086 -8.1154 40 1 3.4780 -0.2092 -5.6841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187181091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:22 Heat of formation + Delta-G solvation = -0.545970 kcal Electronic energy + Delta-G solvation = -19817.979301 eV Core-core repulsion = 16850.590398 eV Total energy + Delta-G solvation = -2967.388904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69080 -38.92393 -37.46650 -35.74846 -34.16403 -31.76254 -31.15839 -30.19976 -28.38890 -26.59541 -25.44164 -23.95994 -23.56166 -21.58721 -20.48108 -18.36491 -18.03313 -17.02531 -16.62532 -16.36871 -15.87071 -15.62918 -15.33727 -14.88080 -14.51650 -14.47604 -14.19111 -13.91123 -13.85382 -13.14981 -12.92308 -12.79498 -12.73741 -12.64691 -12.49636 -12.47772 -12.18253 -12.06843 -12.04358 -11.95171 -11.86916 -11.53507 -11.19958 -10.84585 -10.48768 -9.84204 -9.59440 -8.90020 -8.09541 -6.21163 0.21137 0.33023 1.15031 1.43933 1.45344 1.52788 2.43529 2.67554 3.18423 3.34531 3.80767 3.84959 4.02517 4.21375 4.31440 4.35105 4.44752 4.50271 4.59241 4.68609 4.75016 4.83204 4.92021 4.95292 5.03046 5.05854 5.11226 5.14241 5.22513 5.27656 5.32166 5.39457 5.53610 5.55692 5.67649 5.74843 5.81806 5.89022 6.28403 6.41413 6.76529 6.93949 7.48044 8.96322 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032841 B = 0.003452 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.375575 B = 8110.432618 C = 8386.761912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.216 3.784 3 H -0.043 1.043 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.534 5.534 13 C 0.037 3.963 14 C 0.065 3.935 15 C -0.040 4.040 16 H 0.079 0.921 17 C -0.125 4.125 18 C -0.065 4.065 19 C -0.118 4.118 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.043 4.043 23 Cl -0.075 7.075 24 C -0.119 4.119 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.001 0.999 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.007 0.993 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.133 0.867 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.247 -1.320 -19.702 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.109 3.891 3 H -0.026 1.026 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.258 5.258 13 C -0.111 4.111 14 C -0.064 4.064 15 C -0.059 4.059 16 H 0.097 0.903 17 C -0.183 4.183 18 C -0.065 4.065 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.139 4.139 22 C -0.070 4.070 23 Cl -0.046 7.046 24 C -0.138 4.138 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.020 0.980 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.025 0.975 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.406 -1.652 -19.656 19.729 hybrid contribution 0.817 0.818 1.045 1.559 sum 0.411 -0.834 -18.610 18.634 Atomic orbital electron populations 1.21649 0.97179 0.99336 0.99601 1.19031 0.92751 0.89910 0.87389 1.02604 1.21430 1.31080 1.12315 0.90911 0.92018 1.25710 0.95403 0.95756 1.01910 1.70021 1.37828 1.24262 1.24032 0.85599 0.78671 0.78751 0.78523 1.19763 1.21154 1.19562 1.62058 1.09933 1.52024 1.01789 1.22262 0.88155 0.98614 1.02107 1.22173 1.00444 0.93936 0.89797 1.20096 1.01068 0.95137 0.89584 0.90258 1.21633 0.99436 0.95462 1.01735 1.19888 0.93683 0.97770 0.95197 1.21368 0.96048 0.97940 0.98219 1.21412 1.00573 0.97377 0.92689 1.21300 0.90669 1.00782 1.01146 1.21032 0.90897 1.02860 0.92162 1.98360 1.55737 1.93852 1.56655 1.21064 1.00400 0.99555 0.92790 0.94732 0.92367 0.95103 0.93013 0.98046 0.92142 0.90413 0.97462 0.90866 0.92138 0.92310 0.92670 0.84907 0.82517 0.83224 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.76 71.98 0.63 -5.16 16 2 C 0.22 10.98 2.06 44.17 0.09 11.07 16 3 H -0.04 -2.51 8.14 -2.38 -0.02 -2.53 16 4 C -0.52 -28.37 7.88 25.60 0.20 -28.16 16 5 H 0.06 3.32 6.41 -2.91 -0.02 3.30 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 8 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 N -0.53 -22.16 4.08 -901.44 -3.68 -25.83 16 13 C 0.04 1.42 9.05 127.69 1.16 2.57 16 14 C 0.06 2.25 3.90 86.31 0.34 2.59 16 15 C -0.04 -1.09 2.48 -11.54 -0.03 -1.12 16 16 H 0.08 2.12 6.07 -2.38 -0.01 2.11 16 17 C -0.13 -3.25 8.89 71.98 0.64 -2.61 16 18 C -0.06 -1.57 4.78 -19.87 -0.09 -1.67 16 19 C -0.12 -2.59 8.76 22.27 0.20 -2.39 16 20 C -0.10 -1.85 10.05 22.26 0.22 -1.63 16 21 C -0.12 -2.22 9.83 22.29 0.22 -2.00 16 22 C -0.04 -0.92 6.32 22.32 0.14 -0.78 16 23 Cl -0.07 -1.49 28.96 -2.72 -0.08 -1.57 16 24 C -0.12 -2.76 9.46 22.29 0.21 -2.55 16 25 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 3.13 6.07 -2.38 -0.01 3.12 16 27 H 0.03 1.30 6.20 -2.39 -0.01 1.29 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.06 2.51 6.10 -2.39 -0.01 2.49 16 31 H 0.08 2.44 6.37 -2.39 -0.02 2.42 16 32 H 0.01 0.27 8.12 -2.39 -0.02 0.25 16 33 H 0.07 2.57 5.26 -2.38 -0.01 2.55 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 36 H 0.05 1.38 7.39 -2.38 -0.02 1.36 16 37 H 0.13 2.81 7.16 -2.91 -0.02 2.79 16 38 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.13 2.90 7.95 -2.91 -0.02 2.87 16 Total: -1.00 -59.86 330.57 3.91 -55.95 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.02 Total: 9.65 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.37 Total: -30.82 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.43 Total: -78.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -59.86 3.91 -55.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187181091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.406 kcal (2) G-P(sol) polarization free energy of solvation -59.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds