Wall clock time and date at job start Fri Apr 10 2020 14:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47160 * 2 1 4 4 C 1.53003 * 109.47073 * 240.00669 * 2 1 3 5 5 N 1.46893 * 109.47543 * 64.99512 * 4 2 1 6 6 C 1.46892 * 111.00516 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47729 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47465 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46971 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00244 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99807 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99973 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99979 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47167 * 90.00453 * 13 11 9 15 15 H 1.48506 * 109.47048 * 210.00186 * 13 11 9 16 16 H 1.48502 * 109.47395 * 330.00029 * 13 11 9 17 17 C 1.50694 * 109.47601 * 120.00371 * 2 1 3 18 18 C 1.38265 * 119.99277 * 60.01776 * 17 2 1 19 19 C 1.38215 * 120.02666 * 179.97438 * 18 17 2 20 20 C 1.38234 * 120.01496 * 0.02562 * 19 18 17 21 21 C 1.38327 * 119.98569 * 359.76615 * 20 19 18 22 22 Cl 1.73604 * 120.01716 * 180.27842 * 21 20 19 23 23 C 1.38195 * 119.99579 * 240.00382 * 17 2 1 24 24 H 1.08998 * 109.47475 * 59.99441 * 1 2 3 25 25 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47012 * 299.99784 * 1 2 3 27 27 H 1.09003 * 109.47411 * 185.00255 * 4 2 1 28 28 H 1.09008 * 109.46646 * 304.99650 * 4 2 1 29 29 H 1.00908 * 110.99821 * 56.04457 * 5 4 2 30 30 H 1.08997 * 109.47485 * 300.00512 * 6 5 4 31 31 H 1.09008 * 109.47165 * 60.00293 * 6 5 4 32 32 H 1.08997 * 109.47174 * 300.00848 * 7 6 5 33 33 H 1.09008 * 109.46439 * 59.99994 * 7 6 5 34 34 H 1.08998 * 109.47527 * 300.00100 * 8 7 6 35 35 H 1.08996 * 109.47023 * 60.00226 * 8 7 6 36 36 H 0.97005 * 119.99908 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.98705 * 359.97438 * 18 17 2 38 38 H 1.08000 * 119.99310 * 180.02562 * 19 18 17 39 39 H 1.08006 * 120.00805 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.00237 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6513 0.0375 -2.4457 6 6 2.1246 -0.6268 -3.6673 7 6 1.7011 0.1906 -4.8893 8 6 2.1947 -0.5011 -6.1616 9 6 1.7781 0.3044 -7.3652 10 1 1.2178 1.2185 -7.2356 11 6 2.1123 -0.1256 -8.6319 12 7 1.7492 0.5776 -9.6822 13 14 3.0821 -1.7063 -8.8560 14 1 2.1428 -2.8493 -8.9853 15 1 3.9133 -1.6074 -10.0827 16 1 3.9613 -1.9189 -7.6782 17 6 2.0324 -0.7104 1.2303 18 6 1.6987 -2.0343 1.4487 19 6 2.1595 -2.6867 2.5767 20 6 2.9541 -2.0158 3.4874 21 6 3.2918 -0.6926 3.2673 22 17 4.2956 0.1486 4.4069 23 6 2.8269 -0.0388 2.1400 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1263 -0.7994 -1.2057 28 1 1.6053 -1.7197 -1.2953 29 1 1.9880 0.9875 -2.3966 30 1 3.2114 -0.7048 -3.6407 31 1 1.6902 -1.6247 -3.7298 32 1 0.6143 0.2682 -4.9157 33 1 2.1352 1.1886 -4.8270 34 1 3.2816 -0.5783 -6.1351 35 1 1.7611 -1.4992 -6.2241 36 1 1.9841 0.2749 -10.5734 37 1 1.0776 -2.5588 0.7376 38 1 1.8989 -3.7210 2.7465 39 1 3.3145 -2.5259 4.3686 40 1 3.0873 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187858187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:20 Heat of formation + Delta-G solvation = -27.049332 kcal Electronic energy + Delta-G solvation = -18577.617472 eV Core-core repulsion = 15609.079297 eV Total energy + Delta-G solvation = -2968.538176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63880 -38.25857 -37.41626 -36.08188 -34.70621 -32.92052 -31.76261 -30.34683 -28.66047 -26.25416 -24.28044 -23.78905 -23.14613 -21.96160 -20.89218 -18.90159 -17.98176 -16.88263 -16.68991 -16.45551 -16.32536 -15.57437 -15.49684 -15.13373 -14.83949 -14.63021 -14.46694 -14.17362 -13.74866 -13.52714 -13.29487 -13.04239 -12.75772 -12.59245 -12.51090 -12.48086 -12.20380 -12.07609 -11.78619 -11.73648 -11.61641 -11.46719 -11.37245 -11.21167 -10.75654 -9.86774 -9.62210 -9.32105 -8.28687 -6.32895 0.18637 0.30297 1.14400 1.36465 1.38462 1.50553 2.37030 2.64391 3.06528 3.19526 3.77448 3.81180 3.98830 4.18100 4.20249 4.28466 4.31713 4.37815 4.43178 4.48216 4.69175 4.74760 4.78982 4.87069 4.92749 4.97477 4.99784 5.10518 5.13259 5.20683 5.26389 5.37490 5.50426 5.53682 5.62028 5.63083 5.67564 5.86213 6.09984 6.30713 6.49552 6.75680 7.31662 8.88296 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031313 B = 0.002406 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.970486 B =11635.514913 C =11703.840466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.043 4.043 3 H 0.081 0.919 4 C 0.071 3.929 5 N -0.690 5.690 6 C 0.071 3.929 7 C -0.090 4.090 8 C -0.011 4.011 9 C -0.533 4.533 10 H 0.030 0.970 11 C 0.000 4.000 12 N -0.953 5.953 13 Si 0.955 3.045 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.246 1.246 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.046 4.046 22 Cl -0.078 7.078 23 C -0.119 4.119 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.343 0.657 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.266 0.734 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 -6.938 30.963 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.062 4.062 3 H 0.099 0.901 4 C -0.058 4.058 5 N -0.321 5.321 6 C -0.059 4.059 7 C -0.129 4.129 8 C -0.049 4.049 9 C -0.571 4.571 10 H 0.048 0.952 11 C -0.197 4.197 12 N -0.594 5.594 13 Si 0.778 3.222 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.169 1.169 17 C -0.067 4.067 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.141 4.141 21 C -0.072 4.072 22 Cl -0.049 7.049 23 C -0.138 4.138 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.161 0.839 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.164 0.836 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.060 -7.133 30.860 31.740 hybrid contribution 1.323 0.174 -0.583 1.456 sum 3.383 -6.958 30.277 31.250 Atomic orbital electron populations 1.21698 0.93011 1.02294 1.01841 1.20078 0.97146 0.98888 0.90042 0.90071 1.21994 0.97338 0.97864 0.88646 1.60437 1.64338 1.06096 1.01253 1.21866 0.96974 0.98118 0.88892 1.21261 1.00293 0.98276 0.93021 1.19497 0.96241 0.95897 0.93252 1.21531 1.34970 1.08888 0.91738 0.95212 1.26091 0.96877 1.01180 0.95524 1.70082 1.48856 1.41459 0.99010 0.85594 0.79290 0.79058 0.78290 1.19046 1.21042 1.16906 1.19866 0.96589 0.94607 0.95654 1.21386 0.99709 0.94066 0.98114 1.21426 0.96357 1.01201 0.93237 1.21311 0.99137 0.92447 1.01185 1.21075 0.98720 0.94174 0.93245 1.98370 1.68089 1.78189 1.60242 1.21097 0.98513 1.00893 0.93279 0.91854 0.92369 0.92730 0.95579 0.90606 0.83881 0.95379 0.91128 0.93127 0.93546 0.96319 0.96238 0.92526 0.84249 0.82654 0.83639 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.89 71.98 0.64 -1.58 16 2 C -0.04 -0.72 2.70 -11.54 -0.03 -0.75 16 3 H 0.08 1.33 7.88 -2.38 -0.02 1.31 16 4 C 0.07 1.40 4.81 86.31 0.42 1.82 16 5 N -0.69 -16.96 5.95 -513.89 -3.06 -20.02 16 6 C 0.07 2.10 5.69 86.30 0.49 2.60 16 7 C -0.09 -3.50 5.41 30.59 0.17 -3.33 16 8 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 9 C -0.53 -31.34 9.66 25.60 0.25 -31.09 16 10 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 11 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 12 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 13 Si 0.95 44.57 27.47 68.60 1.88 46.45 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 17 C -0.07 -1.08 4.78 -19.87 -0.09 -1.17 16 18 C -0.11 -1.64 8.76 22.27 0.20 -1.44 16 19 C -0.10 -1.28 10.04 22.26 0.22 -1.06 16 20 C -0.12 -1.69 9.83 22.29 0.22 -1.47 16 21 C -0.05 -0.76 6.32 22.32 0.14 -0.61 16 22 Cl -0.08 -1.27 28.96 -2.72 -0.08 -1.35 16 23 C -0.12 -2.01 9.46 22.29 0.21 -1.79 16 24 H 0.06 1.25 7.75 -2.39 -0.02 1.23 16 25 H 0.06 0.93 7.39 -2.38 -0.02 0.91 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 1.47 7.57 -2.38 -0.02 1.45 16 29 H 0.34 7.99 8.73 -89.69 -0.78 7.21 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 35 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 36 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 37 H 0.14 1.68 7.16 -2.91 -0.02 1.66 16 38 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.13 2.08 7.95 -2.91 -0.02 2.05 16 Total: -1.00 -66.20 343.43 2.62 -63.58 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.17 Total: 11.59 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 3.41 Total: -39.84 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.76 Total: -80.43 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -66.20 2.62 -63.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187858187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.530 kcal (2) G-P(sol) polarization free energy of solvation -66.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds