Wall clock time and date at job start Fri Apr 10 2020 14:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46895 * 109.47331 * 2 1 4 4 C 1.46900 * 111.00454 * 194.85692 * 3 2 1 5 5 C 1.50699 * 109.47114 * 66.04386 * 4 3 2 6 6 C 1.38237 * 120.00545 * 259.96122 * 5 4 3 7 7 C 1.38221 * 120.01131 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.02710 * 359.97438 * 7 6 5 9 9 C 1.38196 * 120.01051 * 0.02655 * 8 7 6 10 10 C 1.38327 * 120.00563 * 80.00500 * 5 4 3 11 11 Cl 1.73606 * 120.01475 * 359.95230 * 10 5 4 12 12 C 1.46906 * 110.99758 * 70.89984 * 3 2 1 13 13 H 1.09001 * 109.46865 * 314.03110 * 12 3 2 14 14 C 1.52996 * 109.46798 * 74.03257 * 12 3 2 15 15 C 1.53000 * 109.46963 * 194.03216 * 12 3 2 16 16 C 1.50700 * 109.47104 * 65.50683 * 15 12 3 17 17 H 1.07996 * 120.00312 * 2.97324 * 16 15 12 18 18 C 1.37883 * 119.99584 * 182.97556 * 16 15 12 19 19 N 1.31519 * 119.99832 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00381 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46703 * 90.00393 * 20 18 16 22 22 H 1.48497 * 109.47304 * 210.00350 * 20 18 16 23 23 H 1.48503 * 109.47094 * 330.00872 * 20 18 16 24 24 H 1.09006 * 109.46922 * 174.30387 * 1 2 3 25 25 H 1.08998 * 109.47250 * 294.29660 * 1 2 3 26 26 H 1.08997 * 109.47211 * 54.30155 * 1 2 3 27 27 H 1.08999 * 109.46973 * 240.00103 * 2 1 3 28 28 H 1.09004 * 109.47462 * 120.00235 * 2 1 3 29 29 H 1.09005 * 109.46793 * 306.04597 * 4 3 2 30 30 H 1.08997 * 109.47238 * 186.04911 * 4 3 2 31 31 H 1.07992 * 119.99395 * 0.04073 * 6 5 4 32 32 H 1.07997 * 119.99162 * 180.27338 * 7 6 5 33 33 H 1.07999 * 119.99700 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.00425 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47533 * 60.00261 * 14 12 3 36 36 H 1.09001 * 109.46747 * 179.97438 * 14 12 3 37 37 H 1.08995 * 109.47244 * 299.99886 * 14 12 3 38 38 H 1.09001 * 109.47103 * 185.51061 * 15 12 3 39 39 H 1.09005 * 109.47184 * 305.50838 * 15 12 3 40 40 H 0.96996 * 120.00124 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4449 1.4395 -0.3516 5 6 3.6273 0.9947 -1.7799 6 6 4.0491 -0.2928 -2.0545 7 6 4.2169 -0.7007 -3.3645 8 6 3.9626 0.1785 -4.4009 9 6 3.5409 1.4658 -4.1275 10 6 3.3735 1.8750 -2.8163 11 17 2.8437 3.4920 -2.4722 12 6 1.7720 2.0308 1.2960 13 1 0.7513 1.8225 1.6166 14 6 2.7542 1.4844 2.3340 15 6 1.9647 3.5423 1.1576 16 6 0.9098 4.1011 0.2378 17 1 0.1465 3.4523 -0.1657 18 6 0.9192 5.4407 -0.0886 19 7 -0.0018 5.9285 -0.8908 20 14 2.2389 6.5631 0.6099 21 1 3.4058 6.5860 -0.3083 22 1 1.6949 7.9373 0.7535 23 1 2.6654 6.0580 1.9397 24 1 -0.3633 -1.0227 -0.1020 25 1 -0.3634 0.4228 0.9366 26 1 -0.3633 0.5996 -0.8345 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 4.0076 0.7798 0.3090 30 1 3.8079 2.4612 -0.2400 31 1 4.2473 -0.9801 -1.2455 32 1 4.5422 -1.7079 -3.5788 33 1 4.0935 -0.1409 -5.4242 34 1 3.3418 2.1524 -4.9371 35 1 3.7750 1.6927 2.0134 36 1 2.5708 1.9640 3.2955 37 1 2.6170 0.4076 2.4326 38 1 1.8775 4.0110 2.1378 39 1 2.9524 3.7463 0.7440 40 1 0.0045 6.8709 -1.1202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351620720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:01 Heat of formation + Delta-G solvation = 20.235839 kcal Electronic energy + Delta-G solvation = -20876.122282 eV Core-core repulsion = 17909.634545 eV Total energy + Delta-G solvation = -2966.487737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.46456 -37.74452 -35.59320 -33.11931 -31.96220 -31.47886 -30.43633 -28.66830 -27.69069 -25.03218 -23.22869 -22.36519 -21.53186 -21.02163 -18.51648 -16.80205 -16.44791 -15.68283 -15.38800 -15.10686 -14.53830 -14.07914 -13.84308 -13.54854 -13.12353 -12.88605 -12.68818 -12.51716 -12.22745 -12.06633 -11.72529 -11.44791 -11.27534 -11.21250 -10.97476 -10.89010 -10.76881 -10.70225 -10.46424 -9.97831 -9.76247 -9.67521 -9.48268 -8.94810 -8.67899 -8.35620 -8.19955 -7.45862 -5.82032 -3.72838 1.44148 1.45714 2.93626 3.38429 3.46661 3.49106 3.81500 4.60244 4.61963 4.96658 4.98200 5.12050 5.37401 5.45400 5.52684 5.56592 5.64218 5.67974 5.78287 5.85085 5.88926 5.96549 6.00863 6.02389 6.13900 6.25190 6.42249 6.43231 6.52343 6.54438 6.55543 6.70078 6.73893 6.90276 7.01177 7.20171 7.39295 7.82043 7.90113 8.03984 8.81118 9.31525 9.82060 11.31979 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.007960 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.450764 B = 3516.691766 C = 4438.279923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.495 5.495 4 C 0.090 3.910 5 C -0.065 4.065 6 C -0.109 4.109 7 C -0.129 4.129 8 C -0.116 4.116 9 C -0.121 4.121 10 C -0.020 4.020 11 Cl -0.010 7.010 12 C 0.095 3.905 13 H 0.080 0.920 14 C -0.188 4.188 15 C -0.006 4.006 16 C -0.469 4.469 17 H 0.078 0.922 18 C 0.068 3.932 19 N -0.906 5.906 20 Si 0.853 3.147 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.269 1.269 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.034 0.966 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.013 0.987 39 H 0.012 0.988 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.509 -13.415 -2.445 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.218 5.218 4 C -0.037 4.037 5 C -0.066 4.066 6 C -0.128 4.128 7 C -0.147 4.147 8 C -0.134 4.134 9 C -0.139 4.139 10 C -0.047 4.047 11 Cl 0.019 6.981 12 C -0.013 4.013 13 H 0.098 0.902 14 C -0.247 4.247 15 C -0.043 4.043 16 C -0.508 4.508 17 H 0.097 0.903 18 C -0.131 4.131 19 N -0.547 5.547 20 Si 0.682 3.318 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.194 1.194 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.125 -12.825 -2.834 15.444 hybrid contribution 1.159 0.380 0.878 1.502 sum 9.283 -12.444 -1.956 15.648 Atomic orbital electron populations 1.21723 0.95121 1.00188 1.03001 1.22115 0.96283 0.90288 0.99506 1.62102 1.14084 1.14552 1.31094 1.21074 0.90609 1.02020 0.89993 1.19799 0.98289 0.92971 0.95586 1.20980 1.00132 0.94955 0.96731 1.21054 1.01428 0.99528 0.92722 1.21011 1.00002 0.93308 0.99099 1.21109 1.00819 0.96801 0.95215 1.21190 0.99460 0.90378 0.93713 1.98539 1.87205 1.17384 1.94939 1.21751 0.97848 0.96661 0.85059 0.90241 1.22572 1.01009 1.00060 1.01032 1.19676 0.97655 0.90106 0.96872 1.20907 1.11070 0.93333 1.25452 0.90345 1.24866 0.95146 0.97819 0.95245 1.69899 1.34606 1.13437 1.36782 0.87188 0.83375 0.80874 0.80402 1.20539 1.21812 1.19352 0.93602 0.92773 0.91407 0.91577 0.95884 0.94794 0.88734 0.86089 0.86215 0.85926 0.85424 0.92970 0.92523 0.93787 0.96859 0.96975 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.85 37.16 0.37 -1.85 16 2 C 0.05 0.72 5.46 -3.83 -0.02 0.70 16 3 N -0.50 -8.99 4.11 -228.08 -0.94 -9.92 16 4 C 0.09 1.53 3.32 -4.98 -0.02 1.51 16 5 C -0.07 -1.04 4.63 -104.59 -0.48 -1.53 16 6 C -0.11 -1.43 8.35 -39.59 -0.33 -1.76 16 7 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 8 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 9 C -0.12 -1.77 9.83 -39.55 -0.39 -2.15 16 10 C -0.02 -0.34 6.31 -39.50 -0.25 -0.59 16 11 Cl -0.01 -0.22 27.16 -51.86 -1.41 -1.62 16 12 C 0.09 1.80 2.13 -67.71 -0.14 1.66 16 13 H 0.08 1.57 6.35 -51.93 -0.33 1.24 16 14 C -0.19 -2.97 8.39 37.16 0.31 -2.66 16 15 C -0.01 -0.13 3.51 -27.88 -0.10 -0.23 16 16 C -0.47 -12.68 9.05 -34.44 -0.31 -12.99 16 17 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.91 -27.64 13.96 55.43 0.77 -26.87 16 20 Si 0.85 21.82 27.41 -169.99 -4.66 17.16 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.27 -6.62 6.63 56.52 0.37 -6.24 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.86 6.72 -51.93 -0.35 0.51 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.07 0.99 5.91 -51.93 -0.31 0.69 16 28 H 0.02 0.33 6.51 -51.93 -0.34 -0.01 16 29 H 0.03 0.51 6.70 -51.93 -0.35 0.16 16 30 H 0.09 1.80 5.43 -51.93 -0.28 1.52 16 31 H 0.12 1.36 8.04 -52.49 -0.42 0.93 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.05 0.80 6.53 -51.93 -0.34 0.47 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.62 6.69 -51.93 -0.35 0.27 16 38 H 0.01 0.31 7.41 -51.93 -0.38 -0.07 16 39 H 0.01 0.28 5.60 -51.93 -0.29 -0.01 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -29.86 326.65 -9.42 -39.28 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.85 Total: -1.17 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -2.26 Total: -21.78 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.16 Total: -36.79 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.66 Total: 17.16 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.41 Total: -1.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.86 -9.42 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351620720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.515 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds