Wall clock time and date at job start Fri Apr 10 2020 14:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.47240 * 2 1 4 4 C 1.46901 * 110.99984 * 199.81165 * 3 2 1 5 5 C 1.50703 * 109.46786 * 72.27537 * 4 3 2 6 6 C 1.38235 * 119.98811 * 263.83923 * 5 4 3 7 7 C 1.38219 * 120.01437 * 179.73098 * 6 5 4 8 8 C 1.38345 * 119.98342 * 0.54307 * 7 6 5 9 9 Cl 1.73600 * 120.01143 * 179.70381 * 8 7 6 10 10 C 1.38358 * 119.97726 * 359.72833 * 8 7 6 11 11 C 1.38210 * 119.98148 * 0.02562 * 10 8 7 12 12 C 1.46906 * 110.99780 * 75.85829 * 3 2 1 13 13 H 1.08993 * 109.46881 * 315.28567 * 12 3 2 14 14 C 1.52997 * 109.46914 * 75.28457 * 12 3 2 15 15 C 1.52999 * 109.46963 * 195.28483 * 12 3 2 16 16 C 1.50702 * 109.47245 * 62.88566 * 15 12 3 17 17 H 1.07997 * 119.99477 * 5.01834 * 16 15 12 18 18 C 1.37877 * 119.99738 * 185.01149 * 16 15 12 19 19 N 1.31509 * 120.00062 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99737 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46591 * 60.00253 * 20 18 16 22 22 H 1.48496 * 109.46885 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46912 * 300.00428 * 20 18 16 24 24 H 1.09007 * 109.46586 * 300.65091 * 1 2 3 25 25 H 1.09004 * 109.47362 * 60.64659 * 1 2 3 26 26 H 1.08994 * 109.47482 * 180.65510 * 1 2 3 27 27 H 1.09003 * 109.46714 * 240.00354 * 2 1 3 28 28 H 1.08994 * 109.47112 * 120.00552 * 2 1 3 29 29 H 1.09000 * 109.47165 * 192.27321 * 4 3 2 30 30 H 1.09000 * 109.47069 * 312.27348 * 4 3 2 31 31 H 1.08000 * 119.99113 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.00591 * 180.26856 * 7 6 5 33 33 H 1.07991 * 120.00715 * 179.97438 * 10 8 7 34 34 H 1.08007 * 119.99212 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.47218 * 300.00162 * 14 12 3 36 36 H 1.08997 * 109.46991 * 179.97438 * 14 12 3 37 37 H 1.09000 * 109.47272 * 59.99636 * 14 12 3 38 38 H 1.09000 * 109.46736 * 182.88617 * 15 12 3 39 39 H 1.09000 * 109.46784 * 302.88605 * 15 12 3 40 40 H 0.97003 * 119.99848 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4117 1.4512 -0.4648 5 6 3.4580 1.1974 -1.9496 6 6 3.7303 -0.0716 -2.4255 7 6 3.7675 -0.3062 -3.7871 8 6 3.5431 0.7318 -4.6738 9 17 3.5972 0.4395 -6.3842 10 6 3.2761 2.0029 -4.1971 11 6 3.2343 2.2350 -2.8352 12 6 1.8793 1.9930 1.3299 13 1 0.8960 1.7556 1.7359 14 6 2.9618 1.4412 2.2598 15 6 2.0308 3.5111 1.2152 16 6 0.9223 4.0631 0.3563 17 1 0.1383 3.4106 0.0015 18 6 0.9091 5.4011 0.0238 19 7 1.8640 6.1955 0.4557 20 14 -0.4646 6.0852 -1.0414 21 1 -1.7690 5.8707 -0.3648 22 1 -0.2494 7.5392 -1.2532 23 1 -0.4670 5.3893 -2.3532 24 1 -0.3633 0.5240 0.8842 25 1 -0.3634 0.5038 -0.8957 26 1 -0.3634 -1.0275 0.0117 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8191 2.4396 -0.2523 30 1 4.0035 0.6955 0.0517 31 1 3.9102 -0.8807 -1.7331 32 1 3.9759 -1.2986 -4.1587 33 1 3.1013 2.8135 -4.8888 34 1 3.0263 3.2273 -2.4629 35 1 2.8539 0.3597 2.3415 36 1 2.8579 1.8927 3.2464 37 1 3.9451 1.6785 1.8537 38 1 1.9778 3.9576 2.2082 39 1 2.9935 3.7469 0.7617 40 1 1.8549 7.1368 0.2214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411201572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:11 Heat of formation + Delta-G solvation = -3.882141 kcal Electronic energy + Delta-G solvation = -20297.770632 eV Core-core repulsion = 17330.237061 eV Total energy + Delta-G solvation = -2967.533571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66297 -39.12012 -37.37131 -35.09404 -33.21174 -32.85077 -31.95054 -29.89356 -29.01082 -26.22698 -25.17710 -23.83834 -22.95885 -22.38563 -20.01114 -18.34687 -17.98955 -17.06629 -16.69889 -16.47701 -16.04570 -15.68221 -15.16730 -14.69121 -14.44394 -14.31256 -14.22523 -14.05230 -13.69448 -13.47779 -13.20103 -12.96766 -12.65770 -12.56733 -12.47975 -12.35627 -12.34965 -12.17135 -12.02207 -11.95922 -11.70526 -11.35016 -11.06582 -10.97118 -10.43524 -9.92877 -9.50160 -8.82471 -8.06095 -6.08647 0.20361 0.39726 1.17237 1.41596 1.43073 1.50252 2.48675 2.64456 3.24560 3.38718 3.85749 3.92275 4.01060 4.16240 4.28925 4.37931 4.43701 4.47128 4.51635 4.61739 4.69232 4.77777 4.79859 4.84933 4.98206 5.08104 5.12865 5.16973 5.24917 5.28750 5.29917 5.34476 5.49744 5.56254 5.72021 5.76188 5.90376 5.93954 6.37240 6.52034 6.60912 7.04338 7.56100 9.05599 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.005932 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.494050 B = 4719.076546 C = 5944.529787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 N -0.525 5.525 4 C 0.099 3.901 5 C -0.067 4.067 6 C -0.099 4.099 7 C -0.108 4.108 8 C -0.045 4.045 9 Cl -0.073 7.073 10 C -0.120 4.120 11 C -0.097 4.097 12 C 0.095 3.905 13 H 0.066 0.934 14 C -0.174 4.174 15 C 0.037 3.963 16 C -0.486 4.486 17 H 0.054 0.946 18 C 0.001 3.999 19 N -0.939 5.939 20 Si 0.943 3.057 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.274 1.274 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.053 0.947 38 H -0.012 1.012 39 H -0.001 1.001 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 -16.312 -6.438 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 N -0.249 5.249 4 C -0.029 4.029 5 C -0.068 4.068 6 C -0.118 4.118 7 C -0.127 4.127 8 C -0.072 4.072 9 Cl -0.045 7.045 10 C -0.139 4.139 11 C -0.116 4.116 12 C -0.013 4.013 13 H 0.084 0.916 14 C -0.233 4.233 15 C 0.000 4.000 16 C -0.525 4.525 17 H 0.072 0.928 18 C -0.195 4.195 19 N -0.581 5.581 20 Si 0.770 3.230 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.199 1.199 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.006 0.994 39 H 0.017 0.983 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.982 -15.895 -6.916 17.787 hybrid contribution -0.239 0.888 -0.050 0.921 sum 3.744 -15.007 -6.967 16.964 Atomic orbital electron populations 1.21703 0.95435 1.01373 1.01200 1.22199 0.96092 0.88751 1.01093 1.61969 1.19144 1.17769 1.26001 1.20943 0.90174 1.01163 0.90585 1.20016 0.97535 0.93713 0.95551 1.21223 0.99218 0.96144 0.95165 1.21232 1.00150 0.99002 0.92299 1.20982 1.05936 0.95313 0.84919 1.98347 1.97047 1.96270 1.12799 1.21109 1.00926 0.96229 0.95636 1.21046 0.98193 0.99714 0.92629 1.21630 0.97655 0.95086 0.86966 0.91590 1.22404 0.99592 1.01097 1.00230 1.19040 0.95829 0.90764 0.94375 1.21364 1.08955 0.92887 1.29271 0.92751 1.25693 0.97985 0.97903 0.97931 1.70069 1.34870 1.05064 1.48128 0.85827 0.80447 0.76883 0.79810 1.19764 1.21542 1.19934 0.93929 0.94061 0.90588 0.90189 0.93785 0.92062 0.92333 0.82803 0.82591 0.85008 0.87403 0.91358 0.92622 0.92821 0.99408 0.98298 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 10.03 71.98 0.72 -3.16 16 2 C 0.05 1.26 5.44 86.30 0.47 1.73 16 3 N -0.53 -18.36 3.95 -875.51 -3.46 -21.81 16 4 C 0.10 3.18 3.67 85.56 0.31 3.49 16 5 C -0.07 -2.02 4.96 -19.86 -0.10 -2.12 16 6 C -0.10 -2.28 8.22 22.26 0.18 -2.09 16 7 C -0.11 -2.37 9.83 22.29 0.22 -2.15 16 8 C -0.04 -1.14 6.32 22.32 0.14 -1.00 16 9 Cl -0.07 -1.66 28.96 -2.72 -0.08 -1.74 16 10 C -0.12 -3.55 9.83 22.29 0.22 -3.33 16 11 C -0.10 -3.28 9.72 22.26 0.22 -3.06 16 12 C 0.09 3.64 2.15 44.91 0.10 3.74 16 13 H 0.07 2.60 6.54 -2.39 -0.02 2.58 16 14 C -0.17 -5.41 8.42 71.98 0.61 -4.81 16 15 C 0.04 1.87 4.44 29.85 0.13 2.00 16 16 C -0.49 -26.95 8.78 25.60 0.22 -26.73 16 17 H 0.05 3.01 7.75 -2.91 -0.02 2.98 16 18 C 0.00 0.04 5.46 84.66 0.46 0.51 16 19 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 20 Si 0.94 45.46 29.54 68.60 2.03 47.49 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 24 H 0.04 1.29 6.75 -2.38 -0.02 1.27 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.96 5.79 -2.39 -0.01 1.95 16 28 H 0.04 1.07 6.50 -2.39 -0.02 1.05 16 29 H 0.06 2.38 6.10 -2.39 -0.01 2.36 16 30 H 0.06 1.57 7.08 -2.39 -0.02 1.55 16 31 H 0.15 2.63 7.87 -2.91 -0.02 2.60 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.13 3.66 8.06 -2.92 -0.02 3.63 16 34 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.07 1.74 6.73 -2.39 -0.02 1.73 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.65 6.60 -2.39 -0.02 1.64 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.00 -0.07 6.43 -2.39 -0.02 -0.08 16 40 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -62.63 333.51 3.70 -58.93 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.02 Total: 10.79 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 3.91 Total: -36.98 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.17 Total: -78.48 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -62.63 3.70 -58.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411201572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.044 kcal (2) G-P(sol) polarization free energy of solvation -62.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds