Wall clock time and date at job start Fri Apr 10 2020 14:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46918 * 2 1 4 4 C 1.34768 * 120.00161 * 271.17755 * 3 2 1 5 5 O 1.21704 * 120.00174 * 185.82235 * 4 3 2 6 6 C 1.46660 * 119.99905 * 5.81959 * 4 3 2 7 7 C 1.37927 * 126.21355 * 187.24175 * 6 4 3 8 8 C 1.39927 * 107.11061 * 179.88275 * 7 6 4 9 9 F 1.35093 * 126.08268 * 180.14584 * 8 7 6 10 10 C 1.35569 * 107.83980 * 0.38346 * 8 7 6 11 11 N 1.35745 * 108.83262 * 359.76051 * 10 8 7 12 12 H 0.97005 * 125.68001 * 180.02562 * 11 10 8 13 13 C 1.46501 * 119.99768 * 91.17739 * 3 2 1 14 14 C 1.53496 * 114.20627 * 120.00080 * 13 3 2 15 15 N 1.47063 * 87.98551 * 87.51840 * 14 13 3 16 16 C 1.36945 * 136.05523 * 207.08445 * 15 14 13 17 17 H 1.08001 * 120.00086 * 7.93533 * 16 15 14 18 18 C 1.38809 * 119.99743 * 187.92812 * 16 15 14 19 19 N 1.31618 * 120.00079 * 6.02788 * 18 16 15 20 20 Si 1.86798 * 119.99896 * 186.02676 * 18 16 15 21 21 H 1.48496 * 109.47388 * 265.00765 * 20 18 16 22 22 H 1.48504 * 109.47226 * 25.00978 * 20 18 16 23 23 H 1.48500 * 109.47181 * 145.00873 * 20 18 16 24 24 C 1.47063 * 87.88728 * 27.34282 * 15 14 13 25 25 H 1.08994 * 109.47900 * 300.00305 * 1 2 3 26 26 H 1.09006 * 109.46971 * 60.00426 * 1 2 3 27 27 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47165 * 240.00208 * 2 1 3 29 29 H 1.09006 * 109.46971 * 119.99574 * 2 1 3 30 30 H 1.08002 * 126.45008 * 0.02562 * 7 6 4 31 31 H 1.08000 * 125.58366 * 179.80420 * 10 8 7 32 32 H 1.08996 * 113.28441 * 346.93024 * 13 3 2 33 33 H 1.09001 * 113.46714 * 332.73967 * 14 13 3 34 34 H 1.09000 * 113.46930 * 202.29622 * 14 13 3 35 35 H 0.97001 * 119.99977 * 179.97438 * 19 18 16 36 36 H 1.08999 * 113.46773 * 87.43680 * 24 15 14 37 37 H 1.09003 * 113.46995 * 217.87765 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2203 2.0246 -1.1669 5 8 2.7251 3.1320 -1.1718 6 6 1.8318 1.3902 -2.4308 7 6 2.1031 1.8638 -3.6975 8 6 1.5548 0.9505 -4.6047 9 9 1.6018 1.0414 -5.9518 10 6 0.9633 -0.0391 -3.8915 11 7 1.1253 0.2173 -2.5684 12 1 0.7978 -0.3345 -1.8409 13 6 2.2870 2.0631 1.2685 14 6 3.7406 2.5260 1.4386 15 7 3.3686 3.7739 0.7551 16 6 4.0148 4.7127 -0.0041 17 1 5.0326 4.5423 -0.3227 18 6 3.3616 5.8834 -0.3643 19 7 2.1664 6.1460 0.1203 20 14 4.1790 7.0861 -1.5368 21 1 4.8820 8.1367 -0.7577 22 1 5.1579 6.3614 -2.3864 23 1 3.1467 7.7163 -2.3985 24 6 1.9987 3.5734 1.2511 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.6401 2.7682 -3.9430 31 1 0.4483 -0.8923 -4.3079 32 1 1.8805 1.5395 2.1337 33 1 4.4565 1.9224 0.8808 34 1 4.0310 2.6711 2.4792 35 1 1.7101 6.9642 -0.1311 36 1 1.8300 3.9944 2.2423 37 1 1.2306 3.8620 0.5336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950911736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:43 Heat of formation + Delta-G solvation = 76.258532 kcal Electronic energy + Delta-G solvation = -23200.994740 eV Core-core repulsion = 19705.059611 eV Total energy + Delta-G solvation = -3495.935129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.53142 -42.59637 -40.92562 -38.03425 -36.83309 -34.04265 -32.17371 -30.89688 -30.29530 -29.10892 -26.30216 -25.65104 -24.40912 -23.31657 -22.28451 -21.33906 -20.34099 -18.64528 -18.44540 -17.60255 -16.93247 -16.75252 -16.71965 -16.24850 -15.85788 -15.69457 -15.56198 -15.04943 -14.74565 -14.63335 -14.33101 -14.31663 -13.93348 -13.45137 -13.24107 -12.86298 -12.76977 -12.70394 -12.63884 -12.49399 -12.14744 -11.88722 -11.63394 -11.20925 -10.81729 -10.29729 -9.94210 -9.40941 -9.19755 -8.41291 -7.71917 -4.91518 0.46745 1.39744 1.43352 1.44050 1.50617 1.93078 2.18693 2.55034 2.58691 3.37937 3.56279 3.60549 3.77513 3.86966 3.90967 4.06539 4.25085 4.30487 4.41507 4.52099 4.55522 4.66494 4.82872 4.84337 4.89037 4.93873 4.99937 5.27353 5.32137 5.33998 5.48629 5.61070 5.76632 5.97992 6.14440 6.36342 6.65118 7.10054 7.64130 7.84311 8.83452 9.49555 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.007658 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.178393 B = 3655.439901 C = 5105.536693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.083 3.917 3 N -0.596 5.596 4 C 0.531 3.469 5 O -0.459 6.459 6 C -0.020 4.020 7 C -0.174 4.174 8 C -0.030 4.030 9 F -0.138 7.138 10 C 0.023 3.977 11 N -0.515 5.515 12 H 0.445 0.555 13 C 0.122 3.878 14 C 0.099 3.901 15 N -0.606 5.606 16 C -0.148 4.148 17 H 0.058 0.942 18 C -0.065 4.065 19 N -0.957 5.957 20 Si 0.952 3.048 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.303 1.303 24 C 0.155 3.845 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.233 0.767 32 H 0.145 0.855 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.235 0.765 36 H 0.027 0.973 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 -22.243 -0.477 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.039 4.039 3 N -0.331 5.331 4 C 0.316 3.684 5 O -0.327 6.327 6 C -0.135 4.135 7 C -0.202 4.202 8 C -0.055 4.055 9 F -0.118 7.118 10 C -0.114 4.114 11 N -0.124 5.124 12 H 0.299 0.701 13 C 0.017 3.983 14 C -0.027 4.027 15 N -0.330 5.330 16 C -0.277 4.277 17 H 0.076 0.924 18 C -0.256 4.256 19 N -0.610 5.610 20 Si 0.784 3.216 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.230 1.230 24 C 0.028 3.972 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.249 0.751 32 H 0.163 0.837 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.971 -21.428 -0.526 22.250 hybrid contribution 0.411 1.487 -0.926 1.799 sum -5.561 -19.941 -1.452 20.752 Atomic orbital electron populations 1.22554 0.94738 1.04795 1.02984 1.22215 0.95183 0.81209 1.05319 1.47487 1.67191 1.14462 1.04000 1.17895 0.80842 0.86637 0.83031 1.91577 1.38280 1.17892 1.85001 1.20468 1.06808 0.91720 0.94516 1.21293 1.05993 1.01363 0.91518 1.16694 1.11094 1.00365 0.77305 1.91391 1.95926 1.96463 1.27986 1.22425 1.04623 1.01787 0.82592 1.43286 1.41894 1.18866 1.08400 0.70077 1.22685 0.96168 0.93319 0.86136 1.23037 0.96063 0.87577 0.96040 1.45460 1.07167 1.25020 1.55397 1.18607 0.95064 0.93897 1.20162 0.92410 1.25092 0.97943 0.99369 1.03222 1.69964 1.15562 1.25802 1.49631 0.85409 0.77008 0.79662 0.79494 1.21606 1.20650 1.23049 1.22185 0.88928 0.90881 0.95161 0.91081 0.93818 0.86829 0.89834 0.86081 0.85836 0.75098 0.83746 0.94804 0.92337 0.95598 0.95555 0.96406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 8.94 71.98 0.64 -1.76 16 2 C 0.08 1.33 5.62 86.38 0.49 1.82 16 3 N -0.60 -18.17 2.74 -801.33 -2.20 -20.37 16 4 C 0.53 21.52 7.14 86.44 0.62 22.13 16 5 O -0.46 -24.79 10.31 -4.36 -0.04 -24.83 16 6 C -0.02 -0.67 6.58 40.36 0.27 -0.41 16 7 C -0.17 -6.48 10.66 22.61 0.24 -6.24 16 8 C -0.03 -0.87 7.98 22.06 0.18 -0.70 16 9 F -0.14 -4.25 17.32 44.97 0.78 -3.47 16 10 C 0.02 0.45 11.90 83.47 0.99 1.44 16 11 N -0.52 -10.82 4.24 -183.38 -0.78 -11.60 16 12 H 0.45 6.10 3.42 -92.70 -0.32 5.78 16 13 C 0.12 4.04 4.88 45.55 0.22 4.26 16 14 C 0.10 3.96 8.21 83.18 0.68 4.64 16 15 N -0.61 -32.37 2.09 -738.02 -1.54 -33.91 16 16 C -0.15 -9.07 8.27 84.03 0.70 -8.37 16 17 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 18 C -0.07 -4.11 5.28 84.86 0.45 -3.66 16 19 N -0.96 -63.05 11.85 21.65 0.26 -62.80 16 20 Si 0.95 51.88 29.56 68.60 2.03 53.90 16 21 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 22 H -0.28 -14.92 7.11 99.48 0.71 -14.21 16 23 H -0.30 -16.77 7.11 99.48 0.71 -16.07 16 24 C 0.16 7.45 6.17 83.27 0.51 7.97 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.73 6.51 -2.38 -0.02 0.72 16 27 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 1.19 5.19 -2.39 -0.01 1.18 16 29 H 0.12 1.24 8.06 -2.38 -0.02 1.22 16 30 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 31 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.15 3.23 8.10 -2.39 -0.02 3.21 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.02 1.00 7.00 -2.39 -0.02 0.98 16 Total: -1.00 -87.49 302.32 5.27 -82.22 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: 0.78 Total: -0.27 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 5.98 Total: 21.12 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -4.26 Total: -128.67 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.04 Total: -24.83 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.03 Total: 53.90 kcal Total: -87.49 5.27 -82.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950911736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.482 kcal (2) G-P(sol) polarization free energy of solvation -87.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds