Wall clock time and date at job start Fri Apr 10 2020 14:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35503 * 117.00094 * 2 1 4 4 N 1.32267 * 119.13133 * 359.97438 * 3 2 1 5 5 C 1.32570 * 120.96176 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.23853 * 359.97438 * 5 4 3 7 7 F 1.35103 * 120.78784 * 180.02562 * 6 5 4 8 8 C 1.39781 * 118.42003 * 0.02562 * 6 5 4 9 9 N 1.38663 * 120.50704 * 180.02562 * 8 6 5 10 10 C 1.46500 * 120.00155 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.41476 * 35.14039 * 10 9 8 12 12 C 1.52955 * 109.41432 * 154.99969 * 10 9 8 13 13 C 1.53230 * 109.40686 * 183.63055 * 12 10 9 14 14 C 1.51264 * 108.54060 * 305.37674 * 13 12 10 15 15 C 1.37879 * 120.85152 * 231.32414 * 14 13 12 16 16 N 1.31510 * 120.00089 * 180.02562 * 15 14 13 17 17 Si 1.86805 * 119.99746 * 0.02562 * 15 14 13 18 18 H 1.48499 * 109.47333 * 59.99879 * 17 15 14 19 19 H 1.48496 * 109.46950 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46747 * 299.99789 * 17 15 14 21 21 C 1.51270 * 118.29993 * 51.34019 * 14 13 12 22 22 C 1.53232 * 108.69741 * 308.56051 * 21 14 13 23 23 N 1.32266 * 119.13342 * 180.27555 * 3 2 1 24 24 H 1.09004 * 109.46751 * 60.00008 * 1 2 3 25 25 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47240 * 300.00319 * 1 2 3 27 27 H 1.08000 * 120.37875 * 179.97438 * 5 4 3 28 28 H 0.97004 * 119.99946 * 359.97438 * 9 8 6 29 29 H 1.09007 * 109.48519 * 63.65649 * 12 10 9 30 30 H 1.08998 * 109.49626 * 303.61993 * 12 10 9 31 31 H 1.09001 * 109.62928 * 185.65483 * 13 12 10 32 32 H 1.09011 * 109.78008 * 65.18528 * 13 12 10 33 33 H 0.97004 * 120.00027 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.62532 * 68.37253 * 21 14 13 35 35 H 1.09001 * 109.62715 * 188.74940 * 21 14 13 36 36 H 1.08993 * 109.48218 * 174.70373 * 22 21 14 37 37 H 1.08997 * 109.48080 * 294.74309 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3071 2.3056 -0.0005 5 6 1.8710 3.5054 -0.0010 6 6 3.2499 3.6035 -0.0005 7 9 3.8574 4.8102 -0.0005 8 6 4.0007 2.4244 0.0000 9 7 5.3865 2.4723 0.0011 10 6 6.1625 1.2297 0.0022 11 1 5.6418 0.4769 -0.5896 12 6 7.5412 1.4907 -0.6065 13 6 8.3192 0.1732 -0.6886 14 6 8.3540 -0.4515 0.6886 15 6 9.5452 -0.8601 1.2498 16 7 9.5560 -1.4017 2.4481 17 14 11.1439 -0.6445 0.3078 18 1 11.3585 0.7965 0.0201 19 1 12.2725 -1.1603 1.1235 20 1 11.0715 -1.3987 -0.9693 21 6 7.0482 -0.6168 1.4343 22 6 6.3143 0.7283 1.4438 23 7 3.3660 1.2566 -0.0056 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.2600 4.3960 -0.0019 28 1 5.8422 3.3287 0.0011 29 1 8.0872 2.1968 0.0193 30 1 7.4242 1.9068 -1.6071 31 1 9.3365 0.3691 -1.0276 32 1 7.8253 -0.5041 -1.3855 33 1 10.3941 -1.6896 2.8428 34 1 6.4336 -1.3657 0.9348 35 1 7.2488 -0.9316 2.4584 36 1 5.3303 0.6023 1.8952 37 1 6.8894 1.4521 2.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050453.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:44 Heat of formation + Delta-G solvation = -35.355663 kcal Electronic energy + Delta-G solvation = -22081.519195 eV Core-core repulsion = 18580.744112 eV Total energy + Delta-G solvation = -3500.775084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.80181 -41.04065 -38.55908 -37.45949 -34.92831 -32.90226 -31.78145 -29.99145 -29.62945 -27.50871 -27.16262 -24.18634 -23.19118 -21.88267 -21.38532 -19.73889 -18.82908 -18.25105 -17.41013 -16.55588 -16.34218 -15.92542 -15.53611 -15.38415 -14.66569 -14.44458 -14.08328 -13.78289 -13.26967 -13.15495 -12.98309 -12.42010 -12.19720 -12.06836 -11.75879 -11.63846 -11.49979 -11.24792 -11.01474 -10.74291 -10.64503 -10.31711 -9.94346 -9.70768 -9.31736 -9.10765 -8.90737 -8.70094 -8.48967 -7.82536 -6.11520 -4.03224 0.96026 1.24778 2.43430 3.25923 3.32617 3.34026 3.35494 3.75525 4.00261 4.05257 4.36153 4.74882 4.87449 5.10553 5.15028 5.18401 5.28294 5.47119 5.56245 5.81176 6.00288 6.10960 6.42460 6.52035 6.53549 6.69243 6.75228 6.79110 6.93966 7.06156 7.14173 7.32032 7.38902 7.55868 7.63550 7.78518 7.85398 8.24935 8.37231 8.95154 9.52153 10.98023 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.004507 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.696665 B = 6211.686533 C = 6945.976009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.286 6.286 3 C 0.535 3.465 4 N -0.598 5.598 5 C 0.186 3.814 6 C -0.121 4.121 7 F -0.131 7.131 8 C 0.463 3.537 9 N -0.686 5.686 10 C 0.157 3.843 11 H 0.087 0.913 12 C -0.115 4.115 13 C -0.006 4.006 14 C -0.492 4.492 15 C 0.077 3.923 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.274 1.274 21 C 0.013 3.987 22 C -0.112 4.112 23 N -0.553 5.553 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.176 0.824 28 H 0.411 0.589 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.028 0.972 32 H 0.022 0.978 33 H 0.265 0.735 34 H 0.008 0.992 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 8.726 -5.067 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.187 6.187 3 C 0.231 3.769 4 N -0.333 5.333 5 C 0.025 3.975 6 C -0.152 4.152 7 F -0.111 7.111 8 C 0.214 3.786 9 N -0.315 5.315 10 C 0.055 3.945 11 H 0.105 0.895 12 C -0.154 4.154 13 C -0.044 4.044 14 C -0.511 4.511 15 C -0.126 4.126 16 N -0.525 5.525 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.200 1.200 21 C -0.025 4.025 22 C -0.151 4.151 23 N -0.290 5.290 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.193 0.807 28 H 0.248 0.752 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.665 7.293 -4.926 17.103 hybrid contribution 1.418 1.628 -0.365 2.190 sum -13.246 8.921 -5.291 16.824 Atomic orbital electron populations 1.22971 0.75827 1.03369 1.02741 1.86127 1.23145 1.22547 1.86838 1.20274 0.85032 0.84688 0.86935 1.68103 1.40030 0.97955 1.27207 1.22598 0.89913 0.95496 0.89539 1.18514 0.92921 0.81027 1.22752 1.91454 1.83129 1.41072 1.95425 1.18295 0.86894 0.86579 0.86854 1.45382 1.00441 1.11514 1.74118 1.21339 0.90864 0.83315 0.99016 0.89497 1.21889 0.94680 1.01015 0.97787 1.19562 0.95080 0.92099 0.97635 1.20025 0.92503 1.39140 0.99391 1.24841 0.98444 0.94622 0.94663 1.69825 1.27154 1.40544 1.14994 0.86669 0.82971 0.78617 0.79876 1.20032 1.21823 1.19981 1.19330 0.93190 0.90597 0.99335 1.22042 0.98518 1.00977 0.93546 1.67096 1.08040 1.26291 1.27547 0.91973 0.88020 0.91921 0.80711 0.75174 0.92407 0.94253 0.95341 0.95974 0.92486 0.97396 0.92349 0.94515 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.36 101.05 1.05 1.49 16 2 O -0.29 -4.22 10.56 -18.20 -0.19 -4.41 16 3 C 0.53 8.50 8.49 -91.34 -0.78 7.73 16 4 N -0.60 -8.15 9.22 -14.77 -0.14 -8.29 16 5 C 0.19 2.23 11.28 -17.23 -0.19 2.04 16 6 C -0.12 -1.66 7.38 -39.00 -0.29 -1.95 16 7 F -0.13 -1.71 16.75 2.25 0.04 -1.67 16 8 C 0.46 7.52 7.49 -154.66 -1.16 6.36 16 9 N -0.69 -11.11 5.21 -53.55 -0.28 -11.39 16 10 C 0.16 3.00 2.39 -67.76 -0.16 2.84 16 11 H 0.09 1.80 7.56 -51.93 -0.39 1.41 16 12 C -0.12 -2.21 5.41 -26.64 -0.14 -2.35 16 13 C -0.01 -0.13 5.59 -27.49 -0.15 -0.28 16 14 C -0.49 -12.75 5.52 -98.92 -0.55 -13.30 16 15 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 16 N -0.89 -25.42 12.73 55.43 0.71 -24.71 16 17 Si 0.89 20.92 26.80 -169.99 -4.56 16.36 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.01 0.34 5.95 -27.48 -0.16 0.17 16 22 C -0.11 -2.42 5.56 -26.41 -0.15 -2.56 16 23 N -0.55 -9.82 9.37 -13.90 -0.13 -9.95 16 24 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.41 5.81 8.16 -40.82 -0.33 5.47 16 29 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.63 5.17 -51.93 -0.27 0.36 16 32 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -29.47 310.34 -7.37 -36.85 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.72 Total: 0.37 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.78 Total: 2.17 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.16 Total: -54.34 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.19 Total: -4.41 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.56 Total: 16.36 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.47 -7.37 -36.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050453.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.493 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds