Wall clock time and date at job start Fri Apr 10 2020 14:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35503 * 117.00094 * 2 1 4 4 N 1.32267 * 119.13133 * 359.97438 * 3 2 1 5 5 C 1.32570 * 120.96176 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.23853 * 359.97438 * 5 4 3 7 7 F 1.35103 * 120.78784 * 180.02562 * 6 5 4 8 8 C 1.39781 * 118.42003 * 0.02562 * 6 5 4 9 9 N 1.38663 * 120.50704 * 180.02562 * 8 6 5 10 10 C 1.46500 * 120.00155 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.41476 * 35.14039 * 10 9 8 12 12 C 1.52955 * 109.41432 * 154.99969 * 10 9 8 13 13 C 1.53230 * 109.40686 * 183.63055 * 12 10 9 14 14 C 1.51264 * 108.54060 * 305.37674 * 13 12 10 15 15 C 1.37879 * 120.85152 * 231.32414 * 14 13 12 16 16 N 1.31510 * 120.00089 * 180.02562 * 15 14 13 17 17 Si 1.86805 * 119.99746 * 0.02562 * 15 14 13 18 18 H 1.48499 * 109.47333 * 59.99879 * 17 15 14 19 19 H 1.48496 * 109.46950 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46747 * 299.99789 * 17 15 14 21 21 C 1.51270 * 118.29993 * 51.34019 * 14 13 12 22 22 C 1.53232 * 108.69741 * 308.56051 * 21 14 13 23 23 N 1.32266 * 119.13342 * 180.27555 * 3 2 1 24 24 H 1.09004 * 109.46751 * 60.00008 * 1 2 3 25 25 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47240 * 300.00319 * 1 2 3 27 27 H 1.08000 * 120.37875 * 179.97438 * 5 4 3 28 28 H 0.97004 * 119.99946 * 359.97438 * 9 8 6 29 29 H 1.09007 * 109.48519 * 63.65649 * 12 10 9 30 30 H 1.08998 * 109.49626 * 303.61993 * 12 10 9 31 31 H 1.09001 * 109.62928 * 185.65483 * 13 12 10 32 32 H 1.09011 * 109.78008 * 65.18528 * 13 12 10 33 33 H 0.97004 * 120.00027 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.62532 * 68.37253 * 21 14 13 35 35 H 1.09001 * 109.62715 * 188.74940 * 21 14 13 36 36 H 1.08993 * 109.48218 * 174.70373 * 22 21 14 37 37 H 1.08997 * 109.48080 * 294.74309 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3071 2.3056 -0.0005 5 6 1.8710 3.5054 -0.0010 6 6 3.2499 3.6035 -0.0005 7 9 3.8574 4.8102 -0.0005 8 6 4.0007 2.4244 0.0000 9 7 5.3865 2.4723 0.0011 10 6 6.1625 1.2297 0.0022 11 1 5.6418 0.4769 -0.5896 12 6 7.5412 1.4907 -0.6065 13 6 8.3192 0.1732 -0.6886 14 6 8.3540 -0.4515 0.6886 15 6 9.5452 -0.8601 1.2498 16 7 9.5560 -1.4017 2.4481 17 14 11.1439 -0.6445 0.3078 18 1 11.3585 0.7965 0.0201 19 1 12.2725 -1.1603 1.1235 20 1 11.0715 -1.3987 -0.9693 21 6 7.0482 -0.6168 1.4343 22 6 6.3143 0.7283 1.4438 23 7 3.3660 1.2566 -0.0056 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.2600 4.3960 -0.0019 28 1 5.8422 3.3287 0.0011 29 1 8.0872 2.1968 0.0193 30 1 7.4242 1.9068 -1.6071 31 1 9.3365 0.3691 -1.0276 32 1 7.8253 -0.5041 -1.3855 33 1 10.3941 -1.6896 2.8428 34 1 6.4336 -1.3657 0.9348 35 1 7.2488 -0.9316 2.4584 36 1 5.3303 0.6023 1.8952 37 1 6.8894 1.4521 2.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050453.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:44 Heat of formation + Delta-G solvation = -56.155834 kcal Electronic energy + Delta-G solvation = -22082.421159 eV Core-core repulsion = 18580.744112 eV Total energy + Delta-G solvation = -3501.677047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83671 -42.16284 -39.78523 -38.85913 -36.40738 -34.37528 -33.36791 -31.51870 -31.20902 -28.82584 -28.34081 -25.43550 -24.38495 -23.64445 -23.08597 -21.36164 -20.01751 -19.42214 -18.49938 -18.04274 -17.60922 -17.29916 -16.62387 -16.53542 -16.37178 -15.87274 -15.15555 -15.00732 -14.91339 -14.56402 -14.26088 -14.09919 -14.00917 -13.38993 -13.13933 -12.87172 -12.79491 -12.74844 -12.52884 -12.33466 -12.18515 -12.01212 -11.77459 -11.48361 -10.93545 -10.71085 -10.55422 -10.27891 -10.19603 -9.06605 -8.16468 -6.12098 -0.12093 0.11729 1.39322 1.41667 1.43201 1.50985 2.11628 2.41332 2.62435 2.90793 3.05437 3.12379 3.67276 3.84629 3.98236 4.19412 4.21401 4.46391 4.46503 4.49114 4.69029 4.75699 4.88634 4.94320 4.96418 5.03801 5.18170 5.20839 5.25941 5.44184 5.55557 5.60983 5.74709 5.80896 5.86464 6.14250 6.32948 6.46524 6.93986 7.11620 7.46169 8.94857 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.004507 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.696665 B = 6211.686533 C = 6945.976009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.522 3.478 4 N -0.588 5.588 5 C 0.200 3.800 6 C -0.117 4.117 7 F -0.125 7.125 8 C 0.447 3.553 9 N -0.686 5.686 10 C 0.175 3.825 11 H 0.070 0.930 12 C -0.107 4.107 13 C -0.010 4.010 14 C -0.502 4.502 15 C 0.021 3.979 16 N -0.933 5.933 17 Si 0.947 3.053 18 H -0.259 1.259 19 H -0.296 1.296 20 H -0.266 1.266 21 C 0.012 3.988 22 C -0.098 4.098 23 N -0.591 5.591 24 H 0.070 0.930 25 H 0.127 0.873 26 H 0.067 0.933 27 H 0.222 0.778 28 H 0.422 0.578 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.023 0.977 33 H 0.263 0.737 34 H -0.006 1.006 35 H 0.022 0.978 36 H 0.031 0.969 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.666 10.988 -6.745 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.211 6.211 3 C 0.219 3.781 4 N -0.322 5.322 5 C 0.038 3.962 6 C -0.148 4.148 7 F -0.104 7.104 8 C 0.199 3.801 9 N -0.317 5.317 10 C 0.071 3.929 11 H 0.088 0.912 12 C -0.146 4.146 13 C -0.048 4.048 14 C -0.521 4.521 15 C -0.177 4.177 16 N -0.573 5.573 17 Si 0.773 3.227 18 H -0.184 1.184 19 H -0.223 1.223 20 H -0.191 1.191 21 C -0.026 4.026 22 C -0.137 4.137 23 N -0.328 5.328 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.086 0.914 27 H 0.239 0.761 28 H 0.261 0.739 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.013 0.987 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.822 9.581 -6.624 19.647 hybrid contribution 1.556 0.894 0.185 1.803 sum -14.266 10.474 -6.439 18.833 Atomic orbital electron populations 1.23290 0.73360 1.05330 1.03349 1.86107 1.25662 1.22636 1.86652 1.20478 0.84817 0.85614 0.87212 1.68238 1.39434 0.97991 1.26579 1.23349 0.89640 0.96219 0.87024 1.18496 0.93339 0.80410 1.22551 1.91476 1.83145 1.40421 1.95375 1.18503 0.86784 0.87302 0.87520 1.44985 1.00571 1.10711 1.75396 1.20829 0.91311 0.84361 0.96371 0.91178 1.21751 0.93863 0.99205 0.99744 1.19590 0.96220 0.93649 0.95341 1.20615 0.92340 1.38194 1.00927 1.25666 1.01873 0.94710 0.95450 1.69985 1.27695 1.42658 1.16931 0.85738 0.78908 0.79359 0.78661 1.18375 1.22327 1.19105 1.19258 0.93895 0.92337 0.97123 1.21809 0.97364 0.98706 0.95796 1.66991 1.09488 1.27681 1.28682 0.91132 0.85520 0.91402 0.76143 0.73868 0.92037 0.91012 0.94595 0.95830 0.92799 0.98713 0.95876 0.95041 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.36 113.37 1.17 1.90 16 2 O -0.31 -8.95 10.56 -88.04 -0.93 -9.88 16 3 C 0.52 16.09 8.49 180.60 1.53 17.62 16 4 N -0.59 -14.59 9.22 -313.61 -2.89 -17.48 16 5 C 0.20 4.08 11.28 84.58 0.95 5.04 16 6 C -0.12 -2.91 7.38 22.64 0.17 -2.75 16 7 F -0.12 -2.86 16.75 44.97 0.75 -2.11 16 8 C 0.45 13.90 7.49 133.18 1.00 14.90 16 9 N -0.69 -21.25 5.21 -323.35 -1.68 -22.93 16 10 C 0.18 6.59 2.39 45.10 0.11 6.69 16 11 H 0.07 2.90 7.56 -2.39 -0.02 2.88 16 12 C -0.11 -3.90 5.41 30.66 0.17 -3.73 16 13 C -0.01 -0.43 5.59 30.10 0.17 -0.27 16 14 C -0.50 -26.35 5.52 -16.17 -0.09 -26.44 16 15 C 0.02 1.16 5.46 84.66 0.46 1.63 16 16 N -0.93 -55.36 12.73 21.45 0.27 -55.09 16 17 Si 0.95 42.82 26.80 68.60 1.84 44.65 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 C 0.01 0.63 5.95 30.11 0.18 0.81 16 22 C -0.10 -4.30 5.56 30.80 0.17 -4.13 16 23 N -0.59 -20.73 9.37 -310.85 -2.91 -23.64 16 24 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 25 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 27 H 0.22 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.42 11.02 8.16 -92.71 -0.76 10.27 16 29 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.50 5.17 -2.39 -0.01 1.49 16 32 H 0.02 1.01 8.14 -2.38 -0.02 1.00 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.02 1.33 7.07 -2.39 -0.02 1.32 16 36 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -65.60 310.34 0.79 -64.82 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.35 Total: 10.38 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.99 Total: 11.27 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -7.22 Total: -119.14 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.93 Total: -9.88 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.75 Total: -2.11 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.84 Total: 44.65 kcal Total: -65.60 0.79 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050453.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.663 kcal (2) G-P(sol) polarization free energy of solvation -65.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds