Wall clock time and date at job start Fri Apr 10 2020 15:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00250 * 2 1 4 4 H 1.48499 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47139 * 300.00190 * 3 2 1 6 6 H 1.48500 * 109.46802 * 60.00388 * 3 2 1 7 7 C 1.37883 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.53126 * 109.52064 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27785 * 177.62451 * 10 9 7 12 12 N 1.46849 * 109.52113 * 300.82264 * 11 10 9 13 13 C 1.46905 * 110.99664 * 185.83957 * 12 11 10 14 14 C 1.53000 * 109.47172 * 75.80542 * 13 12 11 15 15 O 1.42903 * 109.47362 * 65.01886 * 14 13 12 16 16 C 1.42898 * 114.00047 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47183 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.46743 * 59.99911 * 17 16 15 19 19 F 1.39895 * 109.47323 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47029 * 300.00580 * 17 16 15 21 21 C 1.46844 * 111.20087 * 61.74387 * 12 11 10 22 22 C 1.53037 * 109.52235 * 298.25802 * 21 12 11 23 23 H 0.96999 * 119.99774 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.52368 * 59.87695 * 9 7 2 25 25 H 1.08995 * 109.50214 * 57.68170 * 10 9 7 26 26 H 1.09002 * 109.50549 * 297.56465 * 10 9 7 27 27 H 1.08995 * 109.46292 * 180.80629 * 11 10 9 28 28 H 1.08996 * 109.45440 * 60.83427 * 11 10 9 29 29 H 1.08995 * 109.47048 * 315.80365 * 13 12 11 30 30 H 1.09004 * 109.46925 * 195.80246 * 13 12 11 31 31 H 1.09001 * 109.47402 * 185.02248 * 14 13 12 32 32 H 1.09004 * 109.46869 * 305.02019 * 14 13 12 33 33 H 1.08994 * 109.47210 * 300.00048 * 16 15 14 34 34 H 1.09000 * 109.47219 * 59.99941 * 16 15 14 35 35 H 1.09001 * 109.46077 * 58.27441 * 21 12 11 36 36 H 1.08998 * 109.46144 * 178.24191 * 21 12 11 37 37 H 1.09006 * 109.50047 * 299.23638 * 22 21 12 38 38 H 1.08993 * 109.50440 * 179.12232 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2449 -3.6639 -0.0018 11 6 1.4750 -4.9852 0.0581 12 7 0.6541 -5.0200 1.2751 13 6 0.0078 -6.3293 1.4368 14 6 1.0381 -7.3499 1.9246 15 8 1.4869 -6.9863 3.2317 16 6 2.4573 -7.8792 3.7823 17 6 2.8639 -7.3944 5.1753 18 9 1.7375 -7.3608 6.0045 19 9 3.8135 -8.2688 5.7146 20 9 3.4118 -6.1107 5.0809 21 6 -0.3396 -3.9389 1.2766 22 6 0.3761 -2.5864 1.2530 23 1 -0.4850 0.8401 0.0004 24 1 0.6220 -2.5566 -0.8889 25 1 2.8996 -3.5845 0.8660 26 1 2.8421 -3.6317 -0.9131 27 1 2.1803 -5.8161 0.0717 28 1 0.8309 -5.0700 -0.8171 29 1 -0.4001 -6.6538 0.4796 30 1 -0.7978 -6.2492 2.1667 31 1 0.5815 -8.3390 1.9593 32 1 1.8864 -7.3651 1.2403 33 1 2.0305 -8.8794 3.8554 34 1 3.3350 -7.9050 3.1364 35 1 -0.9754 -4.0288 0.3957 36 1 -0.9523 -4.0100 2.1752 37 1 1.0014 -2.4901 2.1407 38 1 -0.3619 -1.7844 1.2383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397184555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:04:21 Heat of formation + Delta-G solvation = -205.421278 kcal Electronic energy + Delta-G solvation = -22834.007751 eV Core-core repulsion = 18875.168883 eV Total energy + Delta-G solvation = -3958.838869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.14605 -47.72892 -47.56381 -38.76410 -37.61496 -34.06792 -31.76697 -30.27086 -29.69943 -28.10180 -25.35027 -23.36636 -22.81476 -21.85177 -20.89032 -18.71810 -18.65934 -18.53739 -17.78278 -16.53342 -16.49232 -16.07414 -14.97216 -14.58650 -14.53863 -14.35471 -14.30869 -14.05962 -13.99835 -13.76429 -13.74972 -13.28939 -12.93301 -12.76390 -12.38770 -12.21511 -11.87882 -11.65923 -11.32474 -11.08264 -10.91386 -10.68323 -10.38034 -10.16484 -9.94414 -9.88083 -9.39557 -8.90969 -8.65956 -8.25271 -7.70697 -5.93271 -3.98100 2.38903 3.26830 3.33635 3.41662 3.46001 3.72968 3.88934 4.34668 4.37731 4.49396 4.76461 4.87190 5.06144 5.15612 5.31003 5.37347 5.56453 5.72273 5.86292 5.91172 6.12039 6.23685 6.35255 6.64189 6.66007 6.78696 6.89221 7.12836 7.21564 7.48863 7.65481 7.73349 7.87650 8.10277 8.20686 8.53269 9.05717 9.66188 11.13053 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.003977 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.200492 B = 7038.038440 C = 7683.465385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.528 5.528 13 C 0.053 3.947 14 C 0.073 3.927 15 O -0.351 6.351 16 C 0.017 3.983 17 C 0.461 3.539 18 F -0.178 7.178 19 F -0.183 7.183 20 F -0.170 7.170 21 C 0.060 3.940 22 C -0.104 4.104 23 H 0.258 0.742 24 H 0.020 0.980 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.023 0.977 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -18.603 5.896 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.253 5.253 13 C -0.076 4.076 14 C -0.004 4.004 15 O -0.270 6.270 16 C -0.062 4.062 17 C 0.407 3.593 18 F -0.159 7.159 19 F -0.164 7.164 20 F -0.151 7.151 21 C -0.067 4.067 22 C -0.142 4.142 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.201 -18.215 6.415 19.436 hybrid contribution 0.069 0.584 -0.588 0.831 sum 2.270 -17.631 5.827 18.707 Atomic orbital electron populations 1.69885 1.05868 1.26138 1.51301 1.24965 0.94826 0.98989 0.95239 0.86586 0.80211 0.84030 0.77464 1.19840 1.21191 1.21071 1.21253 0.92918 0.90677 1.49840 0.92725 1.18687 0.92707 0.91758 0.93946 1.21669 0.98752 0.93724 1.00244 1.22175 0.95888 0.99283 0.89529 1.61944 1.23741 1.01492 1.38131 1.22096 0.95497 0.90482 0.99539 1.22708 0.97754 0.97103 0.82819 1.88087 1.57501 1.48733 1.32673 1.23436 0.96555 0.95350 0.90829 1.20207 0.74907 0.75873 0.88351 1.93207 1.51665 1.96230 1.74827 1.93186 1.65814 1.69643 1.87770 1.93261 1.85883 1.39621 1.96359 1.22275 0.92894 0.93032 0.98545 1.21655 1.00197 0.92935 0.99444 0.93203 0.96229 0.92398 0.93318 0.92739 0.95899 0.93255 0.90244 0.92935 0.92591 0.89297 0.88946 0.96083 0.92547 0.93689 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 11.38 55.43 0.63 -25.04 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.17 8.56 -34.44 -0.29 -14.46 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 10 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 11 C 0.06 1.04 5.29 -3.83 -0.02 1.02 16 12 N -0.53 -9.36 4.53 -234.67 -1.06 -10.42 16 13 C 0.05 0.71 5.39 -3.82 -0.02 0.69 16 14 C 0.07 0.81 6.13 37.16 0.23 1.04 16 15 O -0.35 -4.65 10.18 -35.23 -0.36 -5.00 16 16 C 0.02 0.17 5.90 37.16 0.22 0.38 16 17 C 0.46 5.30 3.32 37.16 0.12 5.43 16 18 F -0.18 -2.27 17.26 2.25 0.04 -2.23 16 19 F -0.18 -1.92 17.32 2.25 0.04 -1.88 16 20 F -0.17 -2.43 17.26 2.25 0.04 -2.39 16 21 C 0.06 1.18 5.43 -3.84 -0.02 1.16 16 22 C -0.10 -2.51 5.12 -26.65 -0.14 -2.64 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.83 6.65 -51.93 -0.35 0.48 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.60 8.00 -51.93 -0.42 0.18 16 30 H 0.08 1.06 7.79 -51.93 -0.40 0.65 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 37 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -30.20 319.28 -6.83 -37.04 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.59 Total: -4.25 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.36 Total: -7.18 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.43 Total: -35.46 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.36 Total: -5.00 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.12 Total: -6.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.20 -6.83 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397184555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.385 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds