Wall clock time and date at job start Fri Apr 10 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00250 * 2 1 4 4 H 1.48499 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47139 * 300.00190 * 3 2 1 6 6 H 1.48500 * 109.46802 * 60.00388 * 3 2 1 7 7 C 1.37883 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.53126 * 109.52064 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27785 * 177.62451 * 10 9 7 12 12 N 1.46849 * 109.52113 * 300.82264 * 11 10 9 13 13 C 1.46905 * 110.99664 * 185.83957 * 12 11 10 14 14 C 1.53000 * 109.47172 * 75.80542 * 13 12 11 15 15 O 1.42903 * 109.47362 * 65.01886 * 14 13 12 16 16 C 1.42898 * 114.00047 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47183 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.46743 * 59.99911 * 17 16 15 19 19 F 1.39895 * 109.47323 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47029 * 300.00580 * 17 16 15 21 21 C 1.46844 * 111.20087 * 61.74387 * 12 11 10 22 22 C 1.53037 * 109.52235 * 298.25802 * 21 12 11 23 23 H 0.96999 * 119.99774 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.52368 * 59.87695 * 9 7 2 25 25 H 1.08995 * 109.50214 * 57.68170 * 10 9 7 26 26 H 1.09002 * 109.50549 * 297.56465 * 10 9 7 27 27 H 1.08995 * 109.46292 * 180.80629 * 11 10 9 28 28 H 1.08996 * 109.45440 * 60.83427 * 11 10 9 29 29 H 1.08995 * 109.47048 * 315.80365 * 13 12 11 30 30 H 1.09004 * 109.46925 * 195.80246 * 13 12 11 31 31 H 1.09001 * 109.47402 * 185.02248 * 14 13 12 32 32 H 1.09004 * 109.46869 * 305.02019 * 14 13 12 33 33 H 1.08994 * 109.47210 * 300.00048 * 16 15 14 34 34 H 1.09000 * 109.47219 * 59.99941 * 16 15 14 35 35 H 1.09001 * 109.46077 * 58.27441 * 21 12 11 36 36 H 1.08998 * 109.46144 * 178.24191 * 21 12 11 37 37 H 1.09006 * 109.50047 * 299.23638 * 22 21 12 38 38 H 1.08993 * 109.50440 * 179.12232 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2449 -3.6639 -0.0018 11 6 1.4750 -4.9852 0.0581 12 7 0.6541 -5.0200 1.2751 13 6 0.0078 -6.3293 1.4368 14 6 1.0381 -7.3499 1.9246 15 8 1.4869 -6.9863 3.2317 16 6 2.4573 -7.8792 3.7823 17 6 2.8639 -7.3944 5.1753 18 9 1.7375 -7.3608 6.0045 19 9 3.8135 -8.2688 5.7146 20 9 3.4118 -6.1107 5.0809 21 6 -0.3396 -3.9389 1.2766 22 6 0.3761 -2.5864 1.2530 23 1 -0.4850 0.8401 0.0004 24 1 0.6220 -2.5566 -0.8889 25 1 2.8996 -3.5845 0.8660 26 1 2.8421 -3.6317 -0.9131 27 1 2.1803 -5.8161 0.0717 28 1 0.8309 -5.0700 -0.8171 29 1 -0.4001 -6.6538 0.4796 30 1 -0.7978 -6.2492 2.1667 31 1 0.5815 -8.3390 1.9593 32 1 1.8864 -7.3651 1.2403 33 1 2.0305 -8.8794 3.8554 34 1 3.3350 -7.9050 3.1364 35 1 -0.9754 -4.0288 0.3957 36 1 -0.9523 -4.0100 2.1752 37 1 1.0014 -2.4901 2.1407 38 1 -0.3619 -1.7844 1.2383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397184555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:04:20 Heat of formation + Delta-G solvation = -224.802803 kcal Electronic energy + Delta-G solvation = -22834.848197 eV Core-core repulsion = 18875.168883 eV Total energy + Delta-G solvation = -3959.679315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.05408 -48.61056 -48.54329 -40.01653 -38.76053 -35.80597 -33.51103 -31.63174 -31.06488 -29.31247 -27.14573 -24.30138 -24.18870 -23.53237 -22.21146 -20.33857 -19.57346 -19.56381 -18.65634 -18.45209 -17.43131 -17.18790 -16.60019 -15.99180 -15.71471 -15.43864 -15.33623 -15.26477 -14.99364 -14.83308 -14.72781 -14.70633 -14.49229 -14.31580 -13.92894 -13.47207 -13.22457 -12.96835 -12.82487 -12.59657 -12.49231 -12.25348 -12.10723 -11.87425 -11.72902 -11.34933 -10.78156 -10.69798 -10.60511 -10.36138 -9.07584 -8.07386 -6.20331 1.39574 1.41656 1.52950 1.58768 2.43237 2.44304 2.93582 3.06973 3.07601 3.19713 3.53367 4.09659 4.13698 4.20593 4.22025 4.28458 4.41501 4.45794 4.54567 4.63137 4.69118 4.78343 4.92366 4.95419 5.00511 5.14238 5.26178 5.37119 5.59000 5.64481 5.98439 6.04160 6.07090 6.33545 6.42747 6.44670 6.91560 7.47313 8.97351 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.003977 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.200492 B = 7038.038440 C = 7683.465385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.100 4.100 11 C 0.067 3.933 12 N -0.541 5.541 13 C 0.048 3.952 14 C 0.074 3.926 15 O -0.388 6.388 16 C 0.020 3.980 17 C 0.455 3.545 18 F -0.189 7.189 19 F -0.177 7.177 20 F -0.192 7.192 21 C 0.072 3.928 22 C -0.095 4.095 23 H 0.260 0.740 24 H -0.009 1.009 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.019 0.981 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 -20.690 5.687 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.061 4.061 12 N -0.266 5.266 13 C -0.079 4.079 14 C -0.002 4.002 15 O -0.308 6.308 16 C -0.058 4.058 17 C 0.401 3.599 18 F -0.170 7.170 19 F -0.159 7.159 20 F -0.174 7.174 21 C -0.056 4.056 22 C -0.134 4.134 23 H 0.069 0.931 24 H 0.009 0.991 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.734 -20.326 6.205 21.427 hybrid contribution -0.091 1.212 -0.490 1.311 sum 2.643 -19.114 5.715 20.124 Atomic orbital electron populations 1.70018 1.07108 1.26929 1.51696 1.25730 0.95685 1.02297 0.94896 0.85599 0.79104 0.79929 0.77587 1.19296 1.20466 1.20738 1.21635 0.92946 0.92414 1.50112 0.93289 1.18664 0.93202 0.92647 0.92975 1.21533 0.97987 0.94406 0.99883 1.22087 0.96231 0.98052 0.89725 1.61878 1.23650 1.02987 1.38135 1.22258 0.96331 0.88616 1.00712 1.22773 0.97545 0.97719 0.82130 1.88022 1.58558 1.50527 1.33643 1.23631 0.96968 0.96010 0.89211 1.20652 0.74581 0.75126 0.89523 1.93182 1.52217 1.96235 1.75396 1.93191 1.65616 1.69191 1.87877 1.93214 1.86245 1.41424 1.96502 1.21996 0.92904 0.91735 0.98970 1.21406 0.99090 0.94916 0.97943 0.93126 0.99112 0.93624 0.92837 0.89237 0.95673 0.91306 0.90303 0.89110 0.91797 0.85738 0.87039 0.96311 0.91464 0.95761 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 11.38 21.45 0.24 -53.97 16 2 C 0.01 0.69 5.31 84.66 0.45 1.14 16 3 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.53 -30.47 8.56 25.60 0.22 -30.25 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.04 2.26 2.16 -11.46 -0.02 2.23 16 10 C -0.10 -4.23 5.32 30.65 0.16 -4.07 16 11 C 0.07 2.21 5.29 86.33 0.46 2.67 16 12 N -0.54 -18.26 4.53 -896.37 -4.06 -22.32 16 13 C 0.05 1.15 5.39 86.30 0.47 1.62 16 14 C 0.07 1.34 6.13 71.98 0.44 1.78 16 15 O -0.39 -9.11 10.18 -148.98 -1.52 -10.62 16 16 C 0.02 0.31 5.90 71.98 0.42 0.74 16 17 C 0.46 9.76 3.32 71.98 0.24 10.00 16 18 F -0.19 -4.62 17.26 44.97 0.78 -3.85 16 19 F -0.18 -3.41 17.32 44.97 0.78 -2.63 16 20 F -0.19 -5.42 17.26 44.97 0.78 -4.64 16 21 C 0.07 2.83 5.43 86.33 0.47 3.30 16 22 C -0.10 -4.73 5.12 30.64 0.16 -4.58 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 27 H 0.09 2.38 6.65 -2.39 -0.02 2.37 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.40 8.00 -2.39 -0.02 1.38 16 30 H 0.08 1.89 7.79 -2.38 -0.02 1.88 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.05 6.70 -2.39 -0.02 1.04 16 33 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 37 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.06 3.31 6.18 -2.39 -0.01 3.29 16 Total: -1.00 -67.49 319.28 3.53 -63.96 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.05 Total: 2.59 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 3.46 Total: -15.41 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -3.82 Total: -76.30 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.52 Total: -10.62 kcal Atomic # 9 Polarization: -13.46 SS G_CDS: 2.33 Total: -11.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.49 3.53 -63.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397184555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.846 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds