Wall clock time and date at job start Fri Apr 10 2020 15:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99826 * 2 1 4 4 H 1.48492 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47135 * 300.00857 * 3 2 1 6 6 H 1.48503 * 109.46847 * 60.00200 * 3 2 1 7 7 C 1.37876 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99427 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47268 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52080 * 174.99786 * 10 9 7 12 12 C 1.53045 * 109.27382 * 177.56287 * 11 10 9 13 13 N 1.46844 * 109.52143 * 300.82250 * 12 11 10 14 14 C 1.46906 * 110.99887 * 185.83959 * 13 12 11 15 15 C 1.53000 * 109.47072 * 170.00138 * 14 13 12 16 16 H 1.08996 * 109.47340 * 60.00144 * 15 14 13 17 17 O 1.42905 * 109.47060 * 299.99840 * 15 14 13 18 18 C 1.52996 * 109.47188 * 180.02562 * 15 14 13 19 19 F 1.39906 * 109.47100 * 59.99918 * 18 15 14 20 20 F 1.39895 * 109.47402 * 179.97438 * 18 15 14 21 21 F 1.39901 * 109.47057 * 300.00152 * 18 15 14 22 22 C 1.46853 * 111.20068 * 61.74346 * 13 12 11 23 23 C 1.53033 * 109.52262 * 298.25891 * 22 13 12 24 24 H 0.97004 * 120.00293 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46996 * 60.00346 * 9 7 2 26 26 H 1.08997 * 109.47220 * 300.00309 * 9 7 2 27 27 H 1.08999 * 109.51592 * 54.87356 * 10 9 7 28 28 H 1.08996 * 109.49890 * 57.62760 * 11 10 9 29 29 H 1.08989 * 109.54077 * 297.52122 * 11 10 9 30 30 H 1.09000 * 109.46052 * 180.80838 * 12 11 10 31 31 H 1.08998 * 109.45499 * 60.82968 * 12 11 10 32 32 H 1.08993 * 109.47164 * 289.99991 * 14 13 12 33 33 H 1.08996 * 109.46920 * 50.00025 * 14 13 12 34 34 H 0.96699 * 114.00063 * 300.00650 * 17 15 14 35 35 H 1.09001 * 109.46125 * 58.27453 * 22 13 12 36 36 H 1.09003 * 109.46462 * 178.23846 * 22 13 12 37 37 H 1.09007 * 109.50330 * 299.23709 * 23 22 13 38 38 H 1.08999 * 109.53502 * 179.13924 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4852 -4.9853 0.1240 12 6 2.4795 -6.1470 0.0610 13 7 3.2090 -6.1000 -1.2126 14 6 4.0730 -7.2780 -1.3681 15 6 4.6207 -7.3237 -2.7960 16 1 5.1986 -6.4207 -2.9926 17 8 3.5341 -7.4045 -3.7206 18 6 5.5200 -8.5508 -2.9582 19 9 4.7777 -9.7096 -2.7061 20 9 6.0203 -8.5929 -4.2640 21 9 6.5837 -8.4723 -2.0530 22 6 3.9843 -4.8589 -1.3350 23 6 3.0350 -3.6587 -1.3136 24 1 -0.4851 0.8401 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.9320 -3.5551 0.8380 28 1 0.7703 -5.0733 -0.6940 29 1 0.9545 -5.0117 1.0756 30 1 1.9400 -7.0912 0.1359 31 1 3.1857 -6.0657 0.8872 32 1 4.9017 -7.2163 -0.6629 33 1 3.4950 -8.1809 -1.1716 34 1 2.9756 -8.1853 -3.6040 35 1 4.6835 -4.7838 -0.5022 36 1 4.5378 -4.8675 -2.2740 37 1 2.3443 -3.7260 -2.1542 38 1 3.6115 -2.7367 -1.3891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399261238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:38 Heat of formation + Delta-G solvation = -240.759968 kcal Electronic energy + Delta-G solvation = -22929.307836 eV Core-core repulsion = 18968.936567 eV Total energy + Delta-G solvation = -3960.371269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -51.17804 -48.68857 -48.66540 -40.34448 -38.33245 -35.98397 -34.24652 -31.88190 -31.39630 -29.47362 -26.76518 -25.04624 -24.25436 -22.97188 -22.06017 -20.45998 -19.70935 -19.60453 -19.26028 -18.41202 -16.99512 -16.79956 -16.64220 -16.39584 -15.58819 -15.49843 -15.34000 -15.10410 -15.02701 -15.00416 -14.81060 -14.79050 -14.70450 -14.25585 -14.06371 -13.57044 -13.30533 -13.03274 -12.88375 -12.63663 -12.47233 -12.28191 -12.16153 -11.99705 -11.64235 -11.39154 -11.23616 -10.84659 -10.68681 -10.50996 -9.25911 -8.16207 -6.25607 1.40109 1.40798 1.53308 1.56198 2.42706 2.47994 2.72130 2.90744 3.13928 3.17724 3.47733 3.66022 3.84628 4.01890 4.11960 4.14218 4.37687 4.49139 4.51813 4.61779 4.71211 4.78538 4.85525 4.96103 5.09774 5.17912 5.40167 5.43489 5.48901 5.59944 5.82728 5.90802 6.09028 6.11418 6.31648 6.50272 6.91223 7.42952 8.95923 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.003468 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.525046 B = 8072.054230 C = 8414.535463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.033 3.967 10 C -0.076 4.076 11 C -0.107 4.107 12 C 0.067 3.933 13 N -0.532 5.532 14 C 0.022 3.978 15 C 0.083 3.917 16 H 0.141 0.859 17 O -0.529 6.529 18 C 0.426 3.574 19 F -0.182 7.182 20 F -0.184 7.184 21 F -0.183 7.183 22 C 0.059 3.941 23 C -0.094 4.094 24 H 0.261 0.739 25 H -0.013 1.013 26 H -0.014 1.014 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.396 0.604 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.259 -19.739 -4.073 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.095 4.095 11 C -0.145 4.145 12 C -0.060 4.060 13 N -0.257 5.257 14 C -0.106 4.106 15 C 0.021 3.979 16 H 0.159 0.841 17 O -0.336 6.336 18 C 0.371 3.629 19 F -0.163 7.163 20 F -0.166 7.166 21 F -0.164 7.164 22 C -0.068 4.068 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.005 0.995 26 H 0.004 0.996 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.247 0.753 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.037 -19.122 -4.664 22.565 hybrid contribution 0.463 0.508 0.841 1.086 sum 11.500 -18.614 -3.823 22.211 Atomic orbital electron populations 1.70114 1.07801 1.27444 1.52342 1.25950 0.95670 1.03197 0.95139 0.85477 0.79229 0.79226 0.77601 1.18472 1.20643 1.20608 1.21693 0.93403 0.92138 1.49360 0.92110 1.19018 0.94064 0.93140 0.94229 1.21100 0.96933 0.94392 0.97030 1.21594 0.97883 0.93781 1.01253 1.22055 0.95859 0.99125 0.88934 1.61761 1.27895 1.01203 1.34867 1.22763 0.97798 0.95848 0.94220 1.23142 0.88322 0.94285 0.92140 0.84124 1.86735 1.40785 1.50510 1.55553 1.21716 0.80748 0.86772 0.73673 1.93180 1.76317 1.52961 1.93876 1.93199 1.88489 1.96817 1.38064 1.93194 1.59135 1.96420 1.67669 1.22164 0.94611 0.89017 1.01040 1.21390 0.97864 0.96757 0.97136 0.92994 0.99490 0.99607 0.93255 0.92666 0.91894 0.88786 0.94393 0.91781 0.87533 0.75307 0.94359 0.89817 0.93392 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.53 -29.76 8.44 25.60 0.22 -29.54 16 8 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 9 C 0.03 1.71 4.45 29.85 0.13 1.85 16 10 C -0.08 -3.03 2.20 -10.71 -0.02 -3.06 16 11 C -0.11 -3.50 5.38 30.65 0.16 -3.33 16 12 C 0.07 1.63 5.46 86.33 0.47 2.10 16 13 N -0.53 -12.50 4.52 -896.34 -4.05 -16.55 16 14 C 0.02 0.36 4.38 86.30 0.38 0.74 16 15 C 0.08 1.36 2.85 30.59 0.09 1.45 16 16 H 0.14 2.29 6.43 -2.39 -0.02 2.28 16 17 O -0.53 -9.72 13.15 -148.98 -1.96 -11.68 16 18 C 0.43 6.91 2.85 71.98 0.21 7.12 16 19 F -0.18 -2.84 16.42 44.97 0.74 -2.10 16 20 F -0.18 -3.55 17.26 44.97 0.78 -2.77 16 21 F -0.18 -3.14 16.80 44.97 0.76 -2.39 16 22 C 0.06 1.58 5.29 86.32 0.46 2.03 16 23 C -0.09 -3.39 5.15 30.64 0.16 -3.24 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 1.82 8.02 -2.39 -0.02 1.80 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.98 7.78 -2.39 -0.02 0.96 16 33 H 0.11 1.41 7.65 -2.39 -0.02 1.39 16 34 H 0.40 4.66 8.69 -74.06 -0.64 4.02 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.96 6.21 -2.39 -0.01 1.95 16 37 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.06 2.20 7.05 -2.39 -0.02 2.18 16 Total: -1.00 -66.25 316.55 1.70 -64.54 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 0.43 Total: 5.29 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 2.71 Total: -23.57 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -3.77 Total: -73.80 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.96 Total: -11.68 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 2.27 Total: -7.26 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -66.25 1.70 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399261238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.215 kcal (2) G-P(sol) polarization free energy of solvation -66.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds