Wall clock time and date at job start Fri Apr 10 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00235 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47291 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47407 * 64.99614 * 12 11 10 14 14 C 1.47015 * 110.99800 * 66.04410 * 13 12 11 15 15 C 1.53095 * 109.26156 * 182.39299 * 14 13 12 16 16 O 1.43016 * 109.26092 * 303.15758 * 15 14 13 17 17 C 1.43016 * 113.73918 * 58.66322 * 16 15 14 18 18 C 1.47009 * 111.00510 * 189.68081 * 13 12 11 19 19 H 1.09007 * 109.50503 * 297.54488 * 18 13 12 20 20 C 1.50699 * 109.50437 * 57.67138 * 18 13 12 21 21 C 1.34509 * 125.78995 * 219.99961 * 20 18 13 22 22 C 1.41388 * 106.84215 * 180.02562 * 21 20 18 23 23 C 1.34507 * 106.83740 * 359.97438 * 22 21 20 24 24 O 1.34300 * 108.42498 * 359.74340 * 23 22 21 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.09003 * 109.46607 * 299.99610 * 11 10 9 29 29 H 1.08998 * 109.47355 * 59.99195 * 11 10 9 30 30 H 1.09002 * 109.47590 * 184.99856 * 12 11 10 31 31 H 1.08997 * 109.47225 * 304.99936 * 12 11 10 32 32 H 1.08994 * 109.51148 * 302.33070 * 14 13 12 33 33 H 1.09006 * 109.50577 * 62.46077 * 14 13 12 34 34 H 1.09007 * 109.50643 * 63.08848 * 15 14 13 35 35 H 1.08997 * 109.51449 * 183.21734 * 15 14 13 36 36 H 1.08998 * 109.50605 * 61.27219 * 17 16 15 37 37 H 1.09002 * 109.50269 * 181.35961 * 17 16 15 38 38 H 1.08004 * 126.58280 * 0.03664 * 21 20 18 39 39 H 1.08004 * 126.57956 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.78967 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 8 2.1798 -3.5852 0.0179 11 6 1.5654 -4.8753 0.0239 12 6 2.6483 -5.9560 0.0289 13 7 3.4085 -5.8817 1.2837 14 6 2.5618 -6.2297 2.4340 15 6 3.3750 -6.0819 3.7227 16 8 4.5422 -6.9043 3.6410 17 6 5.3900 -6.5922 2.5323 18 6 4.5971 -6.7452 1.2316 19 1 4.2876 -7.7838 1.1140 20 6 5.4615 -6.3417 0.0649 21 6 6.1144 -7.1818 -0.7580 22 6 6.7970 -6.3816 -1.7029 23 6 6.5199 -5.1005 -1.4011 24 8 5.7057 -5.0825 -0.3332 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 0.9450 -4.9781 0.9143 29 1 0.9454 -4.9867 -0.8656 30 1 2.1824 -6.9378 -0.0560 31 1 3.3218 -5.7994 -0.8137 32 1 1.7013 -5.5616 2.4680 33 1 2.2198 -7.2601 2.3357 34 1 3.6716 -5.0405 3.8485 35 1 2.7690 -6.3936 4.5734 36 1 5.7452 -5.5657 2.6234 37 1 6.2415 -7.2726 2.5225 38 1 6.1166 -8.2606 -0.7070 39 1 7.4205 -6.7319 -2.5122 40 1 6.8866 -4.2333 -1.9304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590161796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:24 Heat of formation + Delta-G solvation = -90.553758 kcal Electronic energy + Delta-G solvation = -22797.694593 eV Core-core repulsion = 19385.693494 eV Total energy + Delta-G solvation = -3412.001099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.53700 -40.73991 -38.80695 -36.91279 -35.19389 -34.09498 -33.20435 -31.37733 -29.55684 -28.68358 -27.11892 -25.23006 -24.72887 -23.07620 -22.70789 -21.97899 -20.89655 -19.19918 -18.61927 -17.80282 -17.53093 -17.28496 -16.62808 -16.57428 -16.11189 -16.05206 -15.91562 -15.67635 -15.04017 -14.89042 -14.59687 -14.25747 -13.65861 -13.64203 -13.45740 -13.31857 -13.16252 -13.05517 -12.67802 -12.48272 -12.43654 -11.93374 -11.88199 -11.62555 -10.95817 -10.86108 -10.84415 -10.76050 -10.32915 -9.43213 -9.37733 -8.84216 -6.54275 0.78962 1.50739 1.59784 1.69856 1.81284 2.11327 2.48127 2.59934 2.78092 3.02581 3.04098 3.61020 3.71852 3.84199 3.96994 4.03394 4.11423 4.17360 4.22450 4.24673 4.30633 4.32639 4.44523 4.50355 4.59607 4.65793 4.76883 4.79565 4.86251 4.90383 4.92564 4.99347 5.18165 5.59428 5.67945 5.80542 5.85584 5.94615 6.02296 6.33053 6.33613 6.70469 7.26193 8.56897 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.005005 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.706547 B = 5593.262965 C = 6402.476312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.027 4.027 3 Si 1.126 2.874 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.619 4.619 8 H 0.048 0.952 9 C 0.198 3.802 10 O -0.386 6.386 11 C 0.056 3.944 12 C 0.075 3.925 13 N -0.544 5.544 14 C 0.018 3.982 15 C 0.063 3.937 16 O -0.386 6.386 17 C 0.074 3.926 18 C 0.134 3.866 19 H 0.095 0.905 20 C -0.023 4.023 21 C -0.204 4.204 22 C -0.218 4.218 23 C -0.054 4.054 24 O -0.185 6.185 25 H 0.255 0.745 26 H -0.020 1.020 27 H -0.021 1.021 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.127 0.873 36 H 0.044 0.956 37 H 0.126 0.874 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 -17.972 1.719 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.225 4.225 3 Si 0.945 3.055 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.657 4.657 8 H 0.067 0.933 9 C 0.123 3.877 10 O -0.305 6.305 11 C -0.021 4.021 12 C -0.052 4.052 13 N -0.271 5.271 14 C -0.109 4.109 15 C -0.014 4.014 16 O -0.304 6.304 17 C -0.003 4.003 18 C 0.026 3.974 19 H 0.112 0.888 20 C -0.074 4.074 21 C -0.224 4.224 22 C -0.237 4.237 23 C -0.122 4.122 24 O -0.080 6.080 25 H 0.064 0.936 26 H -0.003 1.003 27 H -0.004 1.004 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.145 0.855 36 H 0.063 0.937 37 H 0.144 0.856 38 H 0.189 0.811 39 H 0.190 0.810 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 11.296 -15.738 2.069 19.482 hybrid contribution -0.792 -2.250 -0.671 2.478 sum 10.503 -17.988 1.398 20.877 Atomic orbital electron populations 1.70931 1.07659 1.29730 1.48108 1.27567 0.96466 1.06445 0.92001 0.82853 0.74106 0.70343 0.78228 1.19847 1.19415 1.19217 1.22222 0.95161 0.92142 1.56157 0.93318 1.19911 0.89266 0.86154 0.92415 1.87978 1.33992 1.13590 1.94949 1.22625 0.95344 0.84523 0.99610 1.22004 0.95042 0.96242 0.91952 1.62035 1.07797 1.53796 1.03437 1.22887 0.96662 1.00663 0.90724 1.22788 0.86377 0.94929 0.97301 1.87964 1.35412 1.59490 1.47540 1.22739 0.92742 1.01728 0.83064 1.20891 0.89220 0.95739 0.91587 0.88772 1.22257 1.03356 0.81775 0.99975 1.21883 1.02172 1.01389 0.96936 1.22113 1.05879 0.92248 1.03459 1.24739 0.96099 1.01227 0.90118 1.84210 1.53145 1.30604 1.40078 0.93599 1.00274 1.00382 0.93544 0.93469 0.90660 0.91472 0.90086 0.91913 0.93679 0.85475 0.93734 0.85594 0.81136 0.80951 0.76572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.65 21.45 0.29 -58.01 16 2 C -0.03 -1.64 5.46 84.65 0.46 -1.18 16 3 Si 1.13 51.65 29.90 68.60 2.05 53.70 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.62 -38.56 9.43 25.60 0.24 -38.32 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.20 11.43 5.00 71.24 0.36 11.78 16 10 O -0.39 -19.88 10.27 -148.98 -1.53 -21.41 16 11 C 0.06 2.15 6.00 71.98 0.43 2.58 16 12 C 0.07 2.33 5.16 86.30 0.45 2.78 16 13 N -0.54 -16.65 4.47 -874.41 -3.91 -20.56 16 14 C 0.02 0.46 5.44 86.31 0.47 0.93 16 15 C 0.06 1.51 7.01 72.01 0.50 2.02 16 16 O -0.39 -9.55 10.83 -148.98 -1.61 -11.16 16 17 C 0.07 1.78 6.27 72.01 0.45 2.23 16 18 C 0.13 3.37 2.44 44.18 0.11 3.48 16 19 H 0.09 1.96 8.13 -2.38 -0.02 1.94 16 20 C -0.02 -0.63 4.50 24.83 0.11 -0.52 16 21 C -0.20 -4.51 10.80 22.19 0.24 -4.27 16 22 C -0.22 -4.72 10.91 22.19 0.24 -4.47 16 23 C -0.05 -1.40 12.09 66.97 0.81 -0.59 16 24 O -0.18 -6.20 10.38 -2.48 -0.03 -6.22 16 25 H 0.25 16.16 7.22 -92.70 -0.67 15.49 16 26 H -0.02 -1.20 8.01 -2.38 -0.02 -1.22 16 27 H -0.02 -1.26 8.00 -2.39 -0.02 -1.28 16 28 H 0.05 1.68 6.29 -2.39 -0.02 1.67 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 31 H 0.07 2.32 6.49 -2.39 -0.02 2.30 16 32 H 0.08 2.29 6.28 -2.39 -0.02 2.28 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.22 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -75.65 330.73 1.26 -74.39 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.12 Total: 12.81 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.87 Total: -23.55 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.62 Total: -78.57 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -3.17 Total: -38.79 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Total: -75.65 1.26 -74.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590161796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.160 kcal (2) G-P(sol) polarization free energy of solvation -75.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds