Wall clock time and date at job start Fri Apr 10 2020 14:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99851 * 2 1 4 4 H 1.48500 * 109.47181 * 270.00090 * 3 2 1 5 5 H 1.48501 * 109.46822 * 30.00166 * 3 2 1 6 6 H 1.48501 * 109.46795 * 150.00007 * 3 2 1 7 7 C 1.37880 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00226 * 180.02562 * 7 2 1 10 10 O 1.42900 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99797 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46973 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47401 * 67.27146 * 12 11 10 14 14 C 1.47018 * 111.00125 * 286.42375 * 13 12 11 15 15 C 1.53094 * 109.25873 * 177.60954 * 14 13 12 16 16 O 1.43091 * 109.28772 * 56.85070 * 15 14 13 17 17 C 1.43025 * 113.68657 * 301.36012 * 16 15 14 18 18 C 1.47009 * 111.00221 * 162.79172 * 13 12 11 19 19 H 1.09000 * 109.51169 * 62.45490 * 18 13 12 20 20 C 1.50706 * 109.53862 * 302.34961 * 18 13 12 21 21 C 1.34511 * 125.79277 * 139.91232 * 20 18 13 22 22 C 1.41381 * 106.84345 * 179.88831 * 21 20 18 23 23 C 1.34517 * 106.84082 * 0.36981 * 22 21 20 24 24 O 1.34304 * 108.41686 * 359.77507 * 23 22 21 25 25 H 0.97000 * 119.99981 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47443 * 60.00091 * 9 7 2 27 27 H 1.09005 * 109.47157 * 299.99763 * 9 7 2 28 28 H 1.08997 * 109.47667 * 59.99739 * 11 10 9 29 29 H 1.08999 * 109.46892 * 299.99345 * 11 10 9 30 30 H 1.09000 * 109.46850 * 307.26887 * 12 11 10 31 31 H 1.08990 * 109.46896 * 187.27535 * 12 11 10 32 32 H 1.08996 * 109.50723 * 297.54453 * 14 13 12 33 33 H 1.08998 * 109.50826 * 57.62845 * 14 13 12 34 34 H 1.09005 * 109.50714 * 176.78663 * 15 14 13 35 35 H 1.09001 * 109.50457 * 296.91067 * 15 14 13 36 36 H 1.08996 * 109.50392 * 298.68915 * 17 16 15 37 37 H 1.09002 * 109.50643 * 178.60013 * 17 16 15 38 38 H 1.07998 * 126.57742 * 0.02572 * 21 20 18 39 39 H 1.08002 * 126.57774 * 180.16790 * 22 21 20 40 40 H 1.08000 * 125.79317 * 179.74901 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5412 -0.0013 11 6 5.4125 -2.6540 -0.0003 12 6 5.8071 -4.1323 -0.0025 13 7 5.4174 -4.7412 -1.2812 14 6 3.9615 -4.9329 -1.3516 15 6 3.5941 -5.5128 -2.7200 16 8 4.3113 -6.7341 -2.9238 17 6 5.7322 -6.5832 -2.8617 18 6 6.1212 -6.0142 -1.4947 19 1 5.8411 -6.7206 -0.7133 20 6 7.6095 -5.7806 -1.4519 21 6 8.5162 -6.5886 -0.8738 22 6 9.7823 -5.9915 -1.0719 23 6 9.5727 -4.8500 -1.7521 24 8 8.2547 -4.7275 -1.9794 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8905 27 1 3.8752 -0.6795 -0.8895 28 1 5.8146 -2.1716 0.8906 29 1 5.8159 -2.1694 -0.8894 30 1 5.2988 -4.6452 0.8141 31 1 6.8855 -4.2206 0.1284 32 1 3.6468 -5.6219 -0.5679 33 1 3.4612 -3.9741 -1.2157 34 1 2.5226 -5.7098 -2.7560 35 1 3.8602 -4.8001 -3.5006 36 1 6.0604 -5.9017 -3.6465 37 1 6.2078 -7.5542 -3.0005 38 1 8.3158 -7.5167 -0.3592 39 1 10.7347 -6.3761 -0.7380 40 1 10.3349 -4.1505 -2.0623 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590161797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:40 Heat of formation + Delta-G solvation = -82.907169 kcal Electronic energy + Delta-G solvation = -22668.258159 eV Core-core repulsion = 19256.588641 eV Total energy + Delta-G solvation = -3411.669518 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.53351 -40.69094 -38.78742 -36.78348 -34.85572 -34.05376 -33.10718 -31.62023 -29.91473 -29.30215 -27.02248 -25.16783 -23.96176 -22.96551 -22.74167 -21.99625 -20.89341 -19.04912 -18.57659 -17.77639 -17.41375 -17.25996 -16.67434 -16.60583 -16.35230 -16.08931 -15.97515 -15.61112 -15.06940 -14.71626 -14.60520 -13.99853 -13.74639 -13.67137 -13.48330 -13.26753 -13.08828 -12.84685 -12.71112 -12.51989 -12.47384 -12.02292 -11.83930 -11.66801 -11.33146 -10.94972 -10.88458 -10.73014 -10.28595 -9.49494 -9.36713 -8.36542 -6.43685 0.79020 1.33505 1.35477 1.46115 1.71674 2.08361 2.29215 2.63174 2.81674 2.96481 3.03766 3.66160 3.73671 3.93659 4.00817 4.14478 4.17876 4.18357 4.28823 4.31747 4.37548 4.46547 4.58700 4.62051 4.66776 4.73938 4.79414 4.90287 4.97174 5.00444 5.03011 5.16321 5.19882 5.46358 5.60743 5.84444 5.85676 5.94532 6.07411 6.31165 6.59599 6.72551 7.20631 8.80122 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.004366 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.961237 B = 6411.239288 C = 7324.945073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.540 4.540 8 H 0.035 0.965 9 C 0.179 3.821 10 O -0.394 6.394 11 C 0.060 3.940 12 C 0.071 3.929 13 N -0.532 5.532 14 C 0.017 3.983 15 C 0.066 3.934 16 O -0.392 6.392 17 C 0.073 3.927 18 C 0.128 3.872 19 H 0.080 0.920 20 C -0.019 4.019 21 C -0.206 4.206 22 C -0.223 4.223 23 C -0.043 4.043 24 O -0.181 6.181 25 H 0.272 0.728 26 H 0.009 0.991 27 H 0.007 0.993 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.034 0.966 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.159 -11.994 -3.677 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.103 3.897 10 O -0.314 6.314 11 C -0.018 4.018 12 C -0.056 4.056 13 N -0.258 5.258 14 C -0.111 4.111 15 C -0.011 4.011 16 O -0.310 6.310 17 C -0.004 4.004 18 C 0.019 3.981 19 H 0.098 0.902 20 C -0.069 4.069 21 C -0.226 4.226 22 C -0.242 4.242 23 C -0.111 4.111 24 O -0.077 6.077 25 H 0.081 0.919 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.179 0.821 39 H 0.188 0.812 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 20.762 -11.670 -4.240 24.191 hybrid contribution -0.089 0.566 0.937 1.098 sum 20.672 -11.103 -3.303 23.697 Atomic orbital electron populations 1.70020 1.08142 1.28666 1.51201 1.25758 0.95705 1.03157 0.93608 0.85680 0.79445 0.77997 0.79663 1.18595 1.19943 1.17128 1.21121 0.90703 0.93886 1.52028 0.94659 1.20300 0.93382 0.81173 0.94811 1.87836 1.20694 1.27863 1.94961 1.22571 0.82227 0.96651 1.00306 1.22076 1.00519 0.93343 0.89700 1.62244 1.06481 1.23118 1.33941 1.23016 0.87793 1.02784 0.97487 1.22748 0.97333 0.85785 0.95216 1.87990 1.18195 1.32241 1.92603 1.22779 0.81230 1.02405 0.93954 1.20890 0.85567 0.91462 1.00151 0.90189 1.21974 0.93656 0.89011 1.02264 1.21882 0.92462 1.02829 1.05399 1.22124 0.99523 0.97208 1.05298 1.24835 0.82566 1.01054 1.02605 1.84120 1.20132 1.41352 1.62078 0.91870 0.97291 0.97508 0.92347 0.93198 0.94182 0.88533 0.94733 0.88254 0.87280 0.92379 0.92495 0.85889 0.82112 0.81223 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.96 21.45 0.30 -58.43 16 2 C 0.02 0.93 5.47 84.66 0.46 1.39 16 3 Si 0.95 43.32 27.47 68.60 1.88 45.21 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 7 C -0.54 -32.27 9.99 25.60 0.26 -32.01 16 8 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 9 C 0.18 8.88 4.76 71.23 0.34 9.22 16 10 O -0.39 -17.72 7.36 -148.98 -1.10 -18.82 16 11 C 0.06 2.07 6.23 71.98 0.45 2.51 16 12 C 0.07 2.13 5.38 86.31 0.46 2.59 16 13 N -0.53 -16.03 4.47 -874.41 -3.91 -19.94 16 14 C 0.02 0.56 5.30 86.31 0.46 1.01 16 15 C 0.07 1.94 7.01 72.01 0.50 2.44 16 16 O -0.39 -10.89 10.83 -148.98 -1.61 -12.50 16 17 C 0.07 1.71 6.27 72.02 0.45 2.16 16 18 C 0.13 3.13 2.44 44.18 0.11 3.24 16 19 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 20 C -0.02 -0.42 4.38 24.83 0.11 -0.31 16 21 C -0.21 -3.83 10.80 22.19 0.24 -3.59 16 22 C -0.22 -3.54 10.91 22.19 0.24 -3.29 16 23 C -0.04 -0.72 12.09 66.97 0.81 0.09 16 24 O -0.18 -4.30 10.49 -2.51 -0.03 -4.33 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 27 H 0.01 0.34 7.57 -2.38 -0.02 0.33 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.23 8.03 -2.39 -0.02 1.21 16 31 H 0.10 2.55 6.39 -2.39 -0.02 2.54 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 4.08 5.30 -2.39 -0.01 4.07 16 34 H 0.11 2.98 8.14 -2.38 -0.02 2.96 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 39 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.23 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -69.88 326.51 1.39 -68.48 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.96 Total: 14.86 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 4.89 Total: -14.54 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -3.61 Total: -78.37 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -2.74 Total: -35.65 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -69.88 1.39 -68.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590161797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.423 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds