Wall clock time and date at job start Fri Apr 10 2020 14:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99839 * 2 1 4 4 H 1.48500 * 109.46934 * 269.99579 * 3 2 1 5 5 H 1.48496 * 109.47305 * 29.99954 * 3 2 1 6 6 H 1.48505 * 109.46899 * 149.99893 * 3 2 1 7 7 C 1.37876 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99834 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00253 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47576 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47422 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47011 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46785 * 180.02562 * 12 11 10 14 14 O 1.21276 * 120.00390 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99738 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00054 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47102 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47474 * 59.99930 * 17 16 15 19 19 O 1.42900 * 109.47211 * 299.99852 * 17 16 15 20 20 C 1.50702 * 109.46785 * 180.02562 * 17 16 15 21 21 C 1.34512 * 125.79146 * 264.99695 * 20 17 16 22 22 C 1.41376 * 106.84688 * 179.75198 * 21 20 17 23 23 C 1.34517 * 106.83881 * 0.37683 * 22 21 20 24 24 O 1.34305 * 125.78962 * 84.97917 * 20 17 16 25 25 H 0.96996 * 120.00520 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47125 * 59.99620 * 9 7 2 27 27 H 1.09003 * 109.47115 * 300.00045 * 9 7 2 28 28 H 1.09007 * 109.46831 * 59.99529 * 10 9 7 29 29 H 1.09003 * 109.47040 * 300.00219 * 10 9 7 30 30 H 1.08995 * 109.47136 * 60.00386 * 11 10 9 31 31 H 1.09005 * 109.46853 * 300.00023 * 11 10 9 32 32 H 1.09000 * 109.47474 * 59.99929 * 12 11 10 33 33 H 1.09005 * 109.47161 * 299.99626 * 12 11 10 34 34 H 0.97006 * 120.00245 * 359.97438 * 15 13 12 35 35 H 1.09000 * 109.47013 * 59.99801 * 16 15 13 36 36 H 1.09003 * 109.47290 * 300.00188 * 16 15 13 37 37 H 0.96706 * 113.99859 * 300.00327 * 19 17 16 38 38 H 1.08006 * 126.57585 * 359.97438 * 21 20 17 39 39 H 1.07998 * 126.58562 * 180.23597 * 22 21 20 40 40 H 1.08002 * 125.79423 * 179.89440 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6365 0.0022 12 6 6.0615 -4.0790 0.0028 13 6 7.5685 -4.0789 0.0033 14 8 8.1749 -3.0286 0.0029 15 7 8.2424 -5.2461 0.0044 16 6 9.7074 -5.2461 0.0044 17 6 10.2174 -6.6886 0.0050 18 1 9.8541 -7.2029 -0.8847 19 8 9.7411 -7.3617 1.1721 20 6 11.7244 -6.6885 0.0057 21 6 12.5116 -6.7840 -1.0809 22 6 13.8486 -6.7379 -0.6237 23 6 13.7986 -6.6255 0.7159 24 8 12.5094 -6.5928 1.0912 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8889 28 1 3.6585 -3.1509 -0.8875 29 1 3.6578 -3.1497 0.8925 30 1 5.9149 -2.1220 0.8918 31 1 5.9148 -2.1233 -0.8882 32 1 5.6982 -4.5932 -0.8870 33 1 5.6983 -4.5925 0.8930 34 1 7.7574 -6.0862 0.0051 35 1 10.0708 -4.7314 0.8939 36 1 10.0708 -4.7330 -0.8861 37 1 10.0265 -6.9577 2.0031 38 1 12.1849 -6.8744 -2.1064 39 1 14.7392 -6.7862 -1.2326 40 1 14.6506 -6.5667 1.3771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806446761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:05 Heat of formation + Delta-G solvation = -121.602896 kcal Electronic energy + Delta-G solvation = -20700.712691 eV Core-core repulsion = 17287.365200 eV Total energy + Delta-G solvation = -3413.347490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 11.78 seconds Orbital eigenvalues (eV) -43.58146 -40.84458 -38.62274 -36.68074 -35.38522 -34.59395 -34.06335 -32.28937 -31.61319 -29.03747 -27.33157 -24.65285 -23.38837 -22.75935 -21.85471 -21.65749 -21.11673 -19.09883 -18.84115 -18.21098 -17.36446 -17.17331 -16.88985 -16.57569 -16.39528 -16.18031 -15.50637 -15.36489 -14.89647 -14.56630 -14.31443 -13.96224 -13.80308 -13.69689 -13.53854 -13.47502 -13.28887 -12.82852 -12.67736 -12.32467 -12.05974 -11.74957 -11.57527 -11.51103 -11.33437 -11.25571 -10.92480 -10.83154 -10.75481 -10.17930 -9.49729 -8.29061 -6.32033 0.66795 1.35093 1.36634 1.49533 1.61754 1.64303 1.83634 2.30785 2.36374 3.06196 3.25023 3.54207 3.63774 3.88857 3.96709 4.05985 4.10104 4.17489 4.23911 4.54766 4.63151 4.67762 4.71351 4.79848 4.84719 4.88476 4.96987 5.11116 5.16283 5.21566 5.27213 5.37807 5.53378 5.61975 5.67040 5.69590 6.08026 6.30301 6.48224 6.54455 6.75964 7.25171 7.32680 8.87443 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.046297 B = 0.002224 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.644129 B =12588.198822 C =12919.259949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.131 4.131 13 C 0.513 3.487 14 O -0.587 6.587 15 N -0.713 5.713 16 C 0.093 3.907 17 C 0.200 3.800 18 H 0.151 0.849 19 O -0.555 6.555 20 C -0.068 4.068 21 C -0.204 4.204 22 C -0.231 4.231 23 C -0.037 4.037 24 O -0.188 6.188 25 H 0.266 0.734 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.420 0.580 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.393 0.607 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.972 -18.601 -0.114 35.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.170 4.170 13 C 0.302 3.698 14 O -0.467 6.467 15 N -0.367 5.367 16 C -0.032 4.032 17 C 0.140 3.860 18 H 0.168 0.832 19 O -0.362 6.362 20 C -0.119 4.119 21 C -0.223 4.223 22 C -0.250 4.250 23 C -0.104 4.104 24 O -0.084 6.084 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.258 0.742 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.243 0.757 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 29.877 -18.129 -0.252 34.948 hybrid contribution 0.159 0.997 0.155 1.021 sum 30.037 -17.132 -0.097 34.579 Atomic orbital electron populations 1.70056 1.08102 1.28065 1.52890 1.26007 0.95647 1.03434 0.94345 0.85685 0.79364 0.78599 0.79173 1.19206 1.20751 1.17630 1.21549 0.92131 0.93206 1.49910 0.94452 1.19584 0.93880 0.95967 0.96081 1.21344 0.93755 0.96679 1.01402 1.21287 0.94781 0.95812 1.01744 1.21682 0.89529 0.99079 1.06737 1.21179 0.91207 0.83092 0.74343 1.90697 1.71494 1.33249 1.51296 1.45733 1.06455 1.09164 1.75330 1.21978 0.81051 0.97103 1.03021 1.20605 0.82107 0.91529 0.91744 0.83153 1.86570 1.76231 1.56747 1.16615 1.23227 0.94571 1.08653 0.85408 1.22003 0.93252 1.06739 1.00299 1.22231 0.98686 1.08568 0.95508 1.24849 0.84229 1.04299 0.97065 1.83966 1.17761 1.71213 1.35477 0.92533 0.96847 0.96883 0.92350 0.92450 0.93117 0.92931 0.86348 0.86562 0.74173 0.92109 0.90743 0.75679 0.81747 0.81469 0.74821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 2 C 0.00 0.14 5.47 84.66 0.46 0.60 16 3 Si 0.95 46.17 27.47 68.60 1.88 48.05 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 7 C -0.53 -31.36 9.66 25.60 0.25 -31.11 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 10 C -0.09 -3.61 5.15 30.59 0.16 -3.45 16 11 C -0.10 -3.16 4.50 30.59 0.14 -3.02 16 12 C -0.13 -2.92 5.70 29.85 0.17 -2.75 16 13 C 0.51 12.54 7.83 87.66 0.69 13.23 16 14 O -0.59 -20.14 15.98 -3.02 -0.05 -20.19 16 15 N -0.71 -11.52 5.45 -463.05 -2.52 -14.04 16 16 C 0.09 1.45 5.32 86.38 0.46 1.91 16 17 C 0.20 2.27 3.51 29.85 0.10 2.38 16 18 H 0.15 1.15 8.14 -2.39 -0.02 1.14 16 19 O -0.55 -6.80 13.06 -144.37 -1.89 -8.68 16 20 C -0.07 -0.97 6.20 24.83 0.15 -0.81 16 21 C -0.20 -2.70 10.81 22.19 0.24 -2.46 16 22 C -0.23 -2.73 10.91 22.19 0.24 -2.49 16 23 C -0.04 -0.42 12.09 66.97 0.81 0.39 16 24 O -0.19 -2.86 10.52 2.03 0.02 -2.84 16 25 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 26 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 27 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 28 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 32 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.42 4.43 8.35 -92.70 -0.77 3.66 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.39 3.48 8.93 -74.05 -0.66 2.82 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.24 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -79.14 344.10 1.30 -77.84 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -0.44 Total: 8.61 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 3.99 Total: -28.34 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.22 Total: -74.46 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.91 Total: -31.71 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.05 kcal Total: -79.14 1.30 -77.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806446761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.761 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.78 seconds