Wall clock time and date at job start Fri Apr 10 2020 15:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46990 * 300.00541 * 3 2 1 6 6 H 1.48495 * 109.46960 * 60.00165 * 3 2 1 7 7 C 1.37875 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00137 * 181.06889 * 7 2 1 9 9 C 1.50694 * 120.00426 * 1.06485 * 7 2 1 10 10 C 1.53002 * 115.56325 * 80.59457 * 9 7 2 11 11 O 1.45195 * 109.46791 * 39.69536 * 10 9 7 12 12 C 1.34232 * 116.99876 * 180.02562 * 11 10 9 13 13 O 1.20832 * 119.99771 * 359.97438 * 12 11 10 14 14 C 1.50690 * 120.00235 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.47540 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.60209 * 304.67847 * 15 14 12 17 17 C 1.53344 * 109.60436 * 184.18400 * 15 14 12 18 18 C 1.53087 * 108.40918 * 172.69619 * 17 15 14 19 19 C 1.50180 * 109.88515 * 48.91899 * 18 17 15 20 20 O 1.21282 * 118.24051 * 162.43749 * 19 18 17 21 21 N 1.33352 * 123.50844 * 342.41621 * 19 18 17 22 22 C 1.45744 * 124.10784 * 2.19994 * 21 19 18 23 23 C 1.53006 * 117.49653 * 294.91114 * 9 7 2 24 24 C 1.52997 * 60.03081 * 252.51766 * 23 9 7 25 25 H 0.97003 * 119.99981 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46773 * 159.69306 * 10 9 7 27 27 H 1.09001 * 109.46821 * 279.69189 * 10 9 7 28 28 H 1.09003 * 109.47232 * 300.00390 * 14 12 11 29 29 H 1.09000 * 109.47362 * 59.99963 * 14 12 11 30 30 H 1.08996 * 109.67649 * 292.44791 * 17 15 14 31 31 H 1.09000 * 109.67005 * 52.98843 * 17 15 14 32 32 H 1.08991 * 109.40222 * 288.79121 * 18 17 15 33 33 H 1.09004 * 109.40207 * 169.04241 * 18 17 15 34 34 H 0.97005 * 117.93823 * 182.22310 * 21 19 18 35 35 H 1.09004 * 109.30035 * 220.63450 * 22 21 19 36 36 H 1.09002 * 109.13558 * 101.15508 * 22 21 19 37 37 H 1.08997 * 117.49971 * 145.02047 * 23 9 7 38 38 H 1.09003 * 117.50058 * 0.02562 * 23 9 7 39 39 H 1.09006 * 117.50112 * 107.47597 * 24 23 9 40 40 H 1.09004 * 117.50386 * 252.47341 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1942 0.0169 9 6 1.2513 -2.4990 -0.0254 10 6 0.7479 -2.9447 -1.3997 11 8 1.7558 -2.6512 -2.4028 12 6 1.4677 -2.9825 -3.6713 13 8 0.4086 -3.5011 -3.9346 14 6 2.4651 -2.7078 -4.7669 15 6 1.8943 -3.1784 -6.1062 16 1 1.6138 -4.2292 -6.0352 17 6 2.9468 -2.9964 -7.2065 18 6 2.4194 -3.6405 -8.4912 19 6 1.0152 -3.1779 -8.7555 20 8 0.5640 -3.3222 -9.8719 21 7 0.2380 -2.6174 -7.8281 22 6 0.6645 -2.3420 -6.4619 23 6 0.3833 -2.8369 1.1885 24 6 1.6944 -3.5895 0.9532 25 1 -0.4850 0.8401 0.0004 26 1 0.5517 -4.0168 -1.3846 27 1 -0.1712 -2.4105 -1.6408 28 1 2.6679 -1.6378 -4.8138 29 1 3.3909 -3.2442 -4.5584 30 1 3.1229 -1.9339 -7.3738 31 1 3.8767 -3.4806 -6.9084 32 1 2.4289 -4.7250 -8.3829 33 1 3.0578 -3.3558 -9.3276 34 1 -0.6682 -2.3784 -8.0785 35 1 -0.1468 -2.5842 -5.7755 36 1 0.9097 -1.2839 -6.3706 37 1 -0.5462 -3.3767 1.0080 38 1 0.3568 -2.1151 2.0049 39 1 2.5307 -3.3626 1.6144 40 1 1.6275 -4.6247 0.6182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849802827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:16 Heat of formation + Delta-G solvation = -114.316783 kcal Electronic energy + Delta-G solvation = -22168.328843 eV Core-core repulsion = 18755.297302 eV Total energy + Delta-G solvation = -3413.031541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 8.20 seconds Orbital eigenvalues (eV) -40.59867 -39.69283 -37.29198 -36.51179 -35.23860 -33.56023 -32.00621 -31.58574 -27.83589 -26.30318 -25.25747 -24.57865 -22.34939 -21.23195 -20.25553 -19.34198 -19.20729 -17.32739 -17.05448 -16.60467 -16.25987 -15.74710 -15.61066 -15.25318 -14.70516 -14.43099 -14.14512 -13.79201 -13.47382 -13.36560 -13.13063 -12.68769 -12.05890 -12.03689 -11.73008 -11.67947 -11.41503 -11.17111 -11.06824 -11.02196 -10.92776 -10.55089 -10.38298 -10.07352 -9.87991 -9.81618 -9.55130 -9.12162 -8.99309 -8.52214 -8.19201 -6.10081 -4.14850 2.53960 2.68243 3.20101 3.23548 3.26838 3.32536 3.36311 4.33522 4.35477 4.43372 4.51192 4.60728 5.00295 5.12405 5.18374 5.19102 5.21059 5.42548 5.44130 5.49982 5.54888 5.58477 5.66232 5.88635 5.92599 6.06096 6.13503 6.26862 6.41939 6.61683 6.65320 6.70844 6.95724 7.10832 7.23666 7.30569 7.43406 7.82603 8.10129 8.26725 8.42961 8.85558 9.50547 10.99677 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.003999 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.911490 B = 6999.945128 C = 7544.715221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.118 3.882 11 O -0.323 6.323 12 C 0.451 3.549 13 O -0.528 6.528 14 C -0.109 4.109 15 C -0.092 4.092 16 H 0.091 0.909 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.517 3.483 20 O -0.568 6.568 21 N -0.714 5.714 22 C 0.103 3.897 23 C -0.149 4.149 24 C -0.209 4.209 25 H 0.260 0.740 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.399 0.601 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -5.039 -10.431 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.045 3.955 11 O -0.237 6.237 12 C 0.294 3.706 13 O -0.419 6.419 14 C -0.147 4.147 15 C -0.110 4.110 16 H 0.109 0.891 17 C -0.158 4.158 18 C -0.173 4.173 19 C 0.304 3.696 20 O -0.448 6.448 21 N -0.365 5.365 22 C -0.021 4.021 23 C -0.186 4.186 24 C -0.246 4.246 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.234 0.766 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.796 -5.184 -10.944 13.025 hybrid contribution -0.199 1.021 0.167 1.054 sum 4.597 -4.162 -10.777 12.434 Atomic orbital electron populations 1.69997 1.05886 1.26476 1.49721 1.24976 0.94825 0.98981 0.94587 0.86544 0.80288 0.83663 0.77587 1.19578 1.21012 1.21066 1.20336 0.92479 0.88052 1.50943 0.91909 1.18799 0.98853 0.93920 0.84852 1.22704 0.89282 0.96789 0.86772 1.86590 1.47404 1.73870 1.15797 1.23538 0.87066 0.75112 0.84853 1.90578 1.26023 1.41354 1.83978 1.21339 0.98202 1.05165 0.89987 1.21278 0.94792 1.01702 0.93269 0.89085 1.21752 0.98636 1.02088 0.93284 1.21624 0.93069 1.02782 0.99851 1.20219 0.88428 0.76833 0.84072 1.90746 1.74718 1.56886 1.22478 1.45485 1.16770 1.62222 1.12029 1.21741 0.98967 0.99106 0.82291 1.22564 0.91943 1.01747 1.02368 1.23107 0.99107 0.95631 1.06795 0.93050 0.94235 0.91144 0.87328 0.87182 0.90652 0.89900 0.88144 0.88066 0.76550 0.88207 0.91582 0.91713 0.89433 0.90069 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 12.94 55.43 0.72 -23.41 16 2 C 0.07 1.81 5.44 -17.82 -0.10 1.72 16 3 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.48 -12.50 8.21 -34.44 -0.28 -12.78 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.04 0.86 1.76 -155.62 -0.27 0.58 16 10 C 0.12 2.62 5.53 37.16 0.21 2.83 16 11 O -0.32 -6.63 9.61 -39.26 -0.38 -7.01 16 12 C 0.45 7.55 7.71 36.00 0.28 7.83 16 13 O -0.53 -9.75 13.76 -18.75 -0.26 -10.01 16 14 C -0.11 -1.21 5.29 -27.89 -0.15 -1.36 16 15 C -0.09 -0.91 1.90 -90.48 -0.17 -1.08 16 16 H 0.09 0.98 7.95 -51.93 -0.41 0.57 16 17 C -0.12 -0.90 5.33 -26.51 -0.14 -1.04 16 18 C -0.13 -1.16 6.03 -28.09 -0.17 -1.33 16 19 C 0.52 6.39 7.71 -11.87 -0.09 6.29 16 20 O -0.57 -9.25 17.78 5.56 0.10 -9.15 16 21 N -0.71 -8.04 5.45 -61.39 -0.33 -8.38 16 22 C 0.10 1.14 6.10 -4.49 -0.03 1.11 16 23 C -0.15 -3.32 9.52 -26.73 -0.25 -3.58 16 24 C -0.21 -4.34 9.88 -26.70 -0.26 -4.61 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 26 H 0.04 0.81 7.94 -51.93 -0.41 0.40 16 27 H 0.07 1.71 8.13 -51.93 -0.42 1.29 16 28 H 0.11 1.10 8.12 -51.93 -0.42 0.68 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 4.26 8.80 -40.82 -0.36 3.90 16 35 H 0.10 1.31 6.17 -51.93 -0.32 0.99 16 36 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -31.31 335.37 -7.67 -38.98 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.12 Total: 4.08 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.44 Total: -5.42 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.38 Total: -31.78 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.54 Total: -26.17 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.31 -7.67 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849802827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.336 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.20 seconds