Wall clock time and date at job start Fri Apr 10 2020 15:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46990 * 300.00541 * 3 2 1 6 6 H 1.48495 * 109.46960 * 60.00165 * 3 2 1 7 7 C 1.37875 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00137 * 181.06889 * 7 2 1 9 9 C 1.50694 * 120.00426 * 1.06485 * 7 2 1 10 10 C 1.53002 * 115.56325 * 80.59457 * 9 7 2 11 11 O 1.45195 * 109.46791 * 39.69536 * 10 9 7 12 12 C 1.34232 * 116.99876 * 180.02562 * 11 10 9 13 13 O 1.20832 * 119.99771 * 359.97438 * 12 11 10 14 14 C 1.50690 * 120.00235 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.47540 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.60209 * 304.67847 * 15 14 12 17 17 C 1.53344 * 109.60436 * 184.18400 * 15 14 12 18 18 C 1.53087 * 108.40918 * 172.69619 * 17 15 14 19 19 C 1.50180 * 109.88515 * 48.91899 * 18 17 15 20 20 O 1.21282 * 118.24051 * 162.43749 * 19 18 17 21 21 N 1.33352 * 123.50844 * 342.41621 * 19 18 17 22 22 C 1.45744 * 124.10784 * 2.19994 * 21 19 18 23 23 C 1.53006 * 117.49653 * 294.91114 * 9 7 2 24 24 C 1.52997 * 60.03081 * 252.51766 * 23 9 7 25 25 H 0.97003 * 119.99981 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46773 * 159.69306 * 10 9 7 27 27 H 1.09001 * 109.46821 * 279.69189 * 10 9 7 28 28 H 1.09003 * 109.47232 * 300.00390 * 14 12 11 29 29 H 1.09000 * 109.47362 * 59.99963 * 14 12 11 30 30 H 1.08996 * 109.67649 * 292.44791 * 17 15 14 31 31 H 1.09000 * 109.67005 * 52.98843 * 17 15 14 32 32 H 1.08991 * 109.40222 * 288.79121 * 18 17 15 33 33 H 1.09004 * 109.40207 * 169.04241 * 18 17 15 34 34 H 0.97005 * 117.93823 * 182.22310 * 21 19 18 35 35 H 1.09004 * 109.30035 * 220.63450 * 22 21 19 36 36 H 1.09002 * 109.13558 * 101.15508 * 22 21 19 37 37 H 1.08997 * 117.49971 * 145.02047 * 23 9 7 38 38 H 1.09003 * 117.50058 * 0.02562 * 23 9 7 39 39 H 1.09006 * 117.50112 * 107.47597 * 24 23 9 40 40 H 1.09004 * 117.50386 * 252.47341 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1942 0.0169 9 6 1.2513 -2.4990 -0.0254 10 6 0.7479 -2.9447 -1.3997 11 8 1.7558 -2.6512 -2.4028 12 6 1.4677 -2.9825 -3.6713 13 8 0.4086 -3.5011 -3.9346 14 6 2.4651 -2.7078 -4.7669 15 6 1.8943 -3.1784 -6.1062 16 1 1.6138 -4.2292 -6.0352 17 6 2.9468 -2.9964 -7.2065 18 6 2.4194 -3.6405 -8.4912 19 6 1.0152 -3.1779 -8.7555 20 8 0.5640 -3.3222 -9.8719 21 7 0.2380 -2.6174 -7.8281 22 6 0.6645 -2.3420 -6.4619 23 6 0.3833 -2.8369 1.1885 24 6 1.6944 -3.5895 0.9532 25 1 -0.4850 0.8401 0.0004 26 1 0.5517 -4.0168 -1.3846 27 1 -0.1712 -2.4105 -1.6408 28 1 2.6679 -1.6378 -4.8138 29 1 3.3909 -3.2442 -4.5584 30 1 3.1229 -1.9339 -7.3738 31 1 3.8767 -3.4806 -6.9084 32 1 2.4289 -4.7250 -8.3829 33 1 3.0578 -3.3558 -9.3276 34 1 -0.6682 -2.3784 -8.0785 35 1 -0.1468 -2.5842 -5.7755 36 1 0.9097 -1.2839 -6.3706 37 1 -0.5462 -3.3767 1.0080 38 1 0.3568 -2.1151 2.0049 39 1 2.5307 -3.3626 1.6144 40 1 1.6275 -4.6247 0.6182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849802827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:11 Heat of formation + Delta-G solvation = -133.759475 kcal Electronic energy + Delta-G solvation = -22169.171941 eV Core-core repulsion = 18755.297302 eV Total energy + Delta-G solvation = -3413.874639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.67130 -40.94252 -38.71947 -37.81111 -36.75068 -34.44422 -33.98186 -32.44066 -29.17692 -27.77547 -27.04124 -25.38678 -23.30636 -22.94113 -21.49954 -21.15871 -20.04593 -18.58442 -18.20257 -18.17382 -17.46068 -17.14977 -16.73969 -16.53230 -16.36601 -15.70446 -15.28627 -14.99196 -14.63239 -14.39515 -14.32656 -14.06382 -13.65068 -13.36308 -13.14159 -12.84594 -12.83679 -12.52807 -12.34744 -12.24255 -12.09484 -12.01747 -11.78794 -11.56651 -11.51769 -11.16928 -10.86395 -10.78723 -10.44547 -10.10777 -9.98292 -8.08430 -6.18418 1.36860 1.43524 1.47192 1.57609 1.59707 1.96879 2.31895 2.46637 3.22145 3.40831 3.51905 3.64525 3.71111 3.81554 4.02769 4.20498 4.35267 4.38220 4.44295 4.51372 4.54667 4.61704 4.67115 4.73071 4.76213 4.91276 4.95377 4.97206 4.99234 5.15403 5.18911 5.34348 5.42202 5.60453 5.73209 5.79263 5.87908 6.32847 6.39569 6.84776 6.97748 7.15721 7.49749 9.00879 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.003999 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.911490 B = 6999.945128 C = 7544.715221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.489 4.489 8 H 0.057 0.943 9 C 0.004 3.996 10 C 0.130 3.870 11 O -0.340 6.340 12 C 0.443 3.557 13 O -0.550 6.550 14 C -0.098 4.098 15 C -0.087 4.087 16 H 0.082 0.918 17 C -0.109 4.109 18 C -0.129 4.129 19 C 0.510 3.490 20 O -0.615 6.615 21 N -0.712 5.712 22 C 0.103 3.897 23 C -0.155 4.155 24 C -0.181 4.181 25 H 0.258 0.742 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.125 0.875 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 -5.330 -10.979 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.526 4.526 8 H 0.075 0.925 9 C 0.004 3.996 10 C 0.056 3.944 11 O -0.255 6.255 12 C 0.288 3.712 13 O -0.442 6.442 14 C -0.135 4.135 15 C -0.106 4.106 16 H 0.101 0.899 17 C -0.146 4.146 18 C -0.168 4.168 19 C 0.299 3.701 20 O -0.499 6.499 21 N -0.360 5.360 22 C -0.021 4.021 23 C -0.192 4.192 24 C -0.218 4.218 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.143 0.857 29 H 0.160 0.840 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.280 -5.479 -11.476 14.653 hybrid contribution -1.020 1.073 0.337 1.518 sum 6.260 -4.406 -11.139 13.516 Atomic orbital electron populations 1.70112 1.07176 1.26949 1.51014 1.25653 0.95484 1.01952 0.94499 0.85631 0.79518 0.79955 0.77336 1.18632 1.20793 1.21213 1.20572 0.92368 0.89389 1.50320 0.92500 1.18948 1.00126 0.94549 0.86000 1.22331 0.88429 0.96799 0.86868 1.86586 1.46948 1.74778 1.17213 1.24720 0.87928 0.74032 0.84475 1.90576 1.27407 1.42288 1.83950 1.21517 0.97540 1.06654 0.87806 1.21266 0.94958 1.00758 0.93601 0.89931 1.21736 0.98619 1.03017 0.91255 1.21682 0.90535 1.03530 1.01078 1.20978 0.89832 0.75979 0.83299 1.90724 1.75968 1.58845 1.24319 1.45545 1.16833 1.61579 1.12084 1.21731 0.98910 1.00035 0.81408 1.22481 0.93343 1.02060 1.01362 1.23122 0.97866 0.96160 1.04681 0.93302 0.92998 0.94469 0.85707 0.83976 0.89705 0.86836 0.86897 0.86607 0.76742 0.90803 0.90572 0.90725 0.91482 0.89652 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.74 12.94 21.45 0.28 -50.46 16 2 C 0.02 1.24 5.44 84.65 0.46 1.70 16 3 Si 0.95 41.44 29.54 68.60 2.03 43.46 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.49 -25.34 8.21 25.60 0.21 -25.13 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.00 0.20 1.76 -52.90 -0.09 0.10 16 10 C 0.13 5.79 5.53 71.98 0.40 6.19 16 11 O -0.34 -13.77 9.61 -51.44 -0.49 -14.26 16 12 C 0.44 14.36 7.71 71.23 0.55 14.91 16 13 O -0.55 -20.33 13.76 21.94 0.30 -20.03 16 14 C -0.10 -1.87 5.29 29.85 0.16 -1.71 16 15 C -0.09 -1.50 1.90 -10.70 -0.02 -1.52 16 16 H 0.08 1.61 7.95 -2.39 -0.02 1.59 16 17 C -0.11 -1.19 5.33 30.74 0.16 -1.03 16 18 C -0.13 -1.87 6.03 29.71 0.18 -1.69 16 19 C 0.51 12.08 7.71 87.72 0.68 12.76 16 20 O -0.62 -20.01 17.78 -3.04 -0.05 -20.06 16 21 N -0.71 -15.70 5.45 -467.33 -2.55 -18.24 16 22 C 0.10 2.18 6.10 86.50 0.53 2.70 16 23 C -0.15 -6.92 9.52 30.60 0.29 -6.63 16 24 C -0.18 -7.23 9.88 30.62 0.30 -6.93 16 25 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 26 H 0.05 2.12 7.94 -2.39 -0.02 2.10 16 27 H 0.04 1.86 8.13 -2.39 -0.02 1.85 16 28 H 0.12 2.08 8.12 -2.39 -0.02 2.06 16 29 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.40 8.68 8.80 -92.70 -0.82 7.87 16 35 H 0.07 1.97 6.17 -2.39 -0.01 1.96 16 36 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 40 H 0.09 3.20 8.09 -2.38 -0.02 3.18 16 Total: -1.00 -69.14 335.37 3.54 -65.60 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.23 Total: 20.26 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 3.80 Total: -6.27 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -2.27 Total: -68.70 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.25 Total: -54.35 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -69.14 3.54 -65.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849802827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.163 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds