Wall clock time and date at job start Fri Apr 10 2020 15:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47429 * 264.94627 * 3 2 1 5 5 H 1.48504 * 109.47183 * 24.94778 * 3 2 1 6 6 H 1.48508 * 109.46967 * 144.94376 * 3 2 1 7 7 C 1.37878 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00346 * 351.85278 * 7 2 1 9 9 C 1.50711 * 120.00010 * 171.84650 * 7 2 1 10 10 O 1.42893 * 110.88588 * 328.64474 * 9 7 2 11 11 C 1.55153 * 111.00146 * 204.76082 * 9 7 2 12 12 C 1.54329 * 102.94063 * 206.38524 * 11 9 7 13 13 N 1.47018 * 107.26701 * 22.19642 * 12 11 9 14 14 C 1.34786 * 125.64735 * 181.02000 * 13 12 11 15 15 O 1.21273 * 119.99976 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99585 * 0.02628 * 14 13 12 17 17 H 1.09001 * 115.57023 * 303.92236 * 16 14 13 18 18 C 1.53260 * 117.58329 * 158.01726 * 16 14 13 19 19 C 1.51766 * 59.68068 * 252.62582 * 18 16 14 20 20 C 1.53673 * 122.36943 * 248.26231 * 19 18 16 21 21 C 1.54367 * 103.93394 * 197.03582 * 20 19 18 22 22 O 1.43842 * 107.31193 * 357.18019 * 21 20 19 23 23 C 1.44611 * 107.21981 * 26.13000 * 22 21 20 24 24 C 1.47426 * 108.70597 * 1.28557 * 13 12 11 25 25 H 0.97000 * 120.00477 * 359.97438 * 1 2 3 26 26 H 0.96706 * 114.00307 * 299.36922 * 10 9 7 27 27 H 1.08999 * 110.71912 * 88.03013 * 11 9 7 28 28 H 1.08995 * 110.72679 * 324.75492 * 11 9 7 29 29 H 1.08998 * 109.88014 * 262.78000 * 12 11 9 30 30 H 1.08994 * 109.88142 * 141.61116 * 12 11 9 31 31 H 1.09002 * 117.53067 * 145.22615 * 18 16 14 32 32 H 1.08999 * 117.52690 * 0.02562 * 18 16 14 33 33 H 1.08995 * 110.56796 * 78.37680 * 20 19 18 34 34 H 1.09006 * 110.55898 * 315.67908 * 20 19 18 35 35 H 1.09003 * 109.88428 * 116.60674 * 21 20 19 36 36 H 1.08999 * 109.87882 * 237.60432 * 21 20 19 37 37 H 1.09004 * 110.64654 * 79.84555 * 23 22 21 38 38 H 1.09007 * 110.64438 * 202.90694 * 23 22 21 39 39 H 1.09002 * 110.36318 * 94.48460 * 24 13 12 40 40 H 1.09003 * 110.36301 * 216.80069 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6034 1.9848 -1.3946 5 1 1.3971 2.6812 0.5906 6 1 3.4891 1.4734 0.8042 7 6 2.0045 -1.1940 -0.0005 8 1 1.4728 -2.1247 0.1316 9 6 3.5002 -1.2005 -0.1856 10 8 3.9154 -0.1144 -1.0162 11 6 3.9834 -2.5576 -0.7618 12 6 5.4381 -2.6501 -0.2548 13 7 5.5471 -1.7737 0.9206 14 6 6.6660 -1.5622 1.6417 15 8 6.6398 -0.8151 2.5966 16 6 7.9495 -2.2540 1.2611 17 1 7.9000 -3.3416 1.2084 18 6 9.2630 -1.6272 1.7414 19 6 8.8645 -1.5450 0.2793 20 6 9.6259 -2.2957 -0.8245 21 6 9.1795 -1.5958 -2.1259 22 8 8.2058 -0.6006 -1.7645 23 6 8.4742 -0.2160 -0.3965 24 6 4.2283 -1.1694 1.1837 25 1 -0.4851 0.8400 0.0004 26 1 3.5386 -0.1337 -1.9066 27 1 3.9549 -2.5461 -1.8514 28 1 3.3847 -3.3789 -0.3680 29 1 6.1238 -2.3142 -1.0326 30 1 5.6679 -3.6777 0.0265 31 1 10.0771 -2.3026 2.0045 32 1 9.1987 -0.7141 2.3332 33 1 9.3411 -3.3477 -0.8385 34 1 10.7021 -2.1933 -0.6846 35 1 10.0360 -1.1198 -2.6034 36 1 8.7344 -2.3236 -2.8043 37 1 9.3010 0.4929 -0.3518 38 1 7.5813 0.2038 0.0669 39 1 3.6815 -1.7582 1.9203 40 1 4.3439 -0.1418 1.5283 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327170219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:58 Heat of formation + Delta-G solvation = -94.498850 kcal Electronic energy + Delta-G solvation = -23589.618296 eV Core-core repulsion = 20177.446125 eV Total energy + Delta-G solvation = -3412.172171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53402 -39.02788 -37.61251 -35.71979 -34.69789 -32.35699 -30.66089 -30.20776 -28.53780 -27.56809 -25.67480 -23.56353 -22.76963 -22.15351 -20.07747 -19.78457 -18.52760 -17.49418 -16.89725 -16.57289 -15.95084 -15.42690 -15.23380 -15.04178 -14.88879 -14.34965 -13.99921 -13.60376 -13.26861 -13.02047 -12.67129 -12.50963 -12.34733 -12.11474 -11.94381 -11.71942 -11.66501 -11.49533 -11.11128 -10.82123 -10.60178 -10.51939 -10.25571 -10.22946 -10.18473 -9.69241 -9.46763 -9.24591 -8.58822 -8.48730 -8.07330 -6.21324 -4.33141 2.78525 3.26500 3.47801 3.55684 3.61520 3.73435 3.90424 4.21750 4.49661 4.51187 4.63922 4.71397 4.87472 4.94375 5.09554 5.17148 5.28318 5.30686 5.34957 5.48673 5.50734 5.56495 5.64117 5.70341 5.74203 5.81246 5.83930 5.97033 6.12015 6.17204 6.53648 6.60424 6.69890 6.76110 6.78646 7.02155 7.45181 8.02480 8.12071 8.54513 8.66170 8.82178 9.40829 10.87357 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.005858 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.933682 B = 4778.314174 C = 4969.198976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.944 3.056 4 H -0.290 1.290 5 H -0.324 1.324 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.557 6.557 11 C -0.147 4.147 12 C 0.106 3.894 13 N -0.602 5.602 14 C 0.550 3.450 15 O -0.551 6.551 16 C -0.158 4.158 17 H 0.126 0.874 18 C -0.127 4.127 19 C -0.145 4.145 20 C -0.118 4.118 21 C 0.047 3.953 22 O -0.365 6.365 23 C 0.083 3.917 24 C 0.112 3.888 25 H 0.267 0.733 26 H 0.373 0.627 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.965 -6.434 -3.255 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.779 3.221 4 H -0.217 1.217 5 H -0.255 1.255 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.365 6.365 11 C -0.186 4.186 12 C -0.017 4.017 13 N -0.334 5.334 14 C 0.338 3.662 15 O -0.430 6.430 16 C -0.179 4.179 17 H 0.143 0.857 18 C -0.164 4.164 19 C -0.146 4.146 20 C -0.156 4.156 21 C -0.030 4.030 22 O -0.283 6.283 23 C 0.007 3.993 24 C -0.009 4.009 25 H 0.077 0.923 26 H 0.221 0.779 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.990 -5.713 -2.324 19.966 hybrid contribution 0.167 0.336 -0.379 0.533 sum 19.157 -5.377 -2.703 20.080 Atomic orbital electron populations 1.69957 1.06815 1.27905 1.47266 1.25137 0.94897 1.00459 0.92491 0.85792 0.77865 0.80181 0.78260 1.21719 1.25530 1.19668 1.21173 0.88667 0.95489 1.53792 0.90002 1.20221 0.93397 0.82124 0.86311 1.86139 1.73816 1.49151 1.27376 1.23241 0.93220 1.01252 1.00846 1.22021 0.99300 0.92657 0.87762 1.48595 1.09927 1.45694 1.29148 1.19117 0.83233 0.81603 0.82289 1.90676 1.85146 1.38399 1.28731 1.22188 0.90637 0.99958 1.05152 0.85662 1.22805 0.95914 1.03462 0.94249 1.22198 1.01870 0.98397 0.92138 1.22370 1.00087 1.00066 0.93040 1.23168 0.92419 0.91059 0.96321 1.89014 1.53228 1.57878 1.28208 1.22946 1.01454 0.93358 0.81582 1.22984 0.80168 0.98875 0.98873 0.92328 0.77907 0.90734 0.90415 0.91329 0.92837 0.87636 0.87223 0.90182 0.89992 0.92478 0.89775 0.91454 0.88676 0.90285 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.15 13.96 55.43 0.77 -25.37 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 3 Si 0.94 24.00 24.71 -169.99 -4.20 19.80 16 4 H -0.29 -7.14 7.10 56.52 0.40 -6.74 16 5 H -0.32 -8.44 7.11 56.52 0.40 -8.03 16 6 H -0.27 -7.09 5.52 56.52 0.31 -6.77 16 7 C -0.55 -14.58 8.86 -34.43 -0.31 -14.88 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C 0.22 4.88 0.69 -89.50 -0.06 4.82 16 10 O -0.56 -12.40 8.87 -35.23 -0.31 -12.71 16 11 C -0.15 -2.64 6.14 -24.90 -0.15 -2.79 16 12 C 0.11 1.70 6.48 -3.06 -0.02 1.68 16 13 N -0.60 -11.47 3.33 -170.39 -0.57 -12.03 16 14 C 0.55 10.15 6.26 -10.98 -0.07 10.08 16 15 O -0.55 -12.10 16.76 5.56 0.09 -12.00 16 16 C -0.16 -2.12 5.28 -92.26 -0.49 -2.61 16 17 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 18 C -0.13 -1.42 9.86 -27.22 -0.27 -1.69 16 19 C -0.15 -1.71 2.40 -154.82 -0.37 -2.08 16 20 C -0.12 -1.04 6.84 -25.67 -0.18 -1.22 16 21 C 0.05 0.48 7.72 37.87 0.29 0.77 16 22 O -0.36 -5.35 11.53 -35.23 -0.41 -5.75 16 23 C 0.08 1.16 7.38 37.74 0.28 1.44 16 24 C 0.11 2.51 5.88 -2.41 -0.01 2.49 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 26 H 0.37 7.33 8.83 45.56 0.40 7.74 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.11 1.38 7.86 -51.93 -0.41 0.97 16 33 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.65 7.01 -51.92 -0.36 1.29 16 39 H 0.08 1.76 8.04 -51.93 -0.42 1.35 16 40 H 0.08 1.91 6.39 -51.93 -0.33 1.58 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -32.83 321.95 -6.62 -39.45 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.40 Total: 5.75 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.45 Total: -1.97 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.21 Total: -37.41 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.63 Total: -30.47 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -4.20 Total: 19.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.83 -6.62 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327170219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.048 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds