Wall clock time and date at job start Fri Apr 10 2020 15:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47429 * 264.94627 * 3 2 1 5 5 H 1.48504 * 109.47183 * 24.94778 * 3 2 1 6 6 H 1.48508 * 109.46967 * 144.94376 * 3 2 1 7 7 C 1.37878 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00346 * 351.85278 * 7 2 1 9 9 C 1.50711 * 120.00010 * 171.84650 * 7 2 1 10 10 O 1.42893 * 110.88588 * 328.64474 * 9 7 2 11 11 C 1.55153 * 111.00146 * 204.76082 * 9 7 2 12 12 C 1.54329 * 102.94063 * 206.38524 * 11 9 7 13 13 N 1.47018 * 107.26701 * 22.19642 * 12 11 9 14 14 C 1.34786 * 125.64735 * 181.02000 * 13 12 11 15 15 O 1.21273 * 119.99976 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99585 * 0.02628 * 14 13 12 17 17 H 1.09001 * 115.57023 * 303.92236 * 16 14 13 18 18 C 1.53260 * 117.58329 * 158.01726 * 16 14 13 19 19 C 1.51766 * 59.68068 * 252.62582 * 18 16 14 20 20 C 1.53673 * 122.36943 * 248.26231 * 19 18 16 21 21 C 1.54367 * 103.93394 * 197.03582 * 20 19 18 22 22 O 1.43842 * 107.31193 * 357.18019 * 21 20 19 23 23 C 1.44611 * 107.21981 * 26.13000 * 22 21 20 24 24 C 1.47426 * 108.70597 * 1.28557 * 13 12 11 25 25 H 0.97000 * 120.00477 * 359.97438 * 1 2 3 26 26 H 0.96706 * 114.00307 * 299.36922 * 10 9 7 27 27 H 1.08999 * 110.71912 * 88.03013 * 11 9 7 28 28 H 1.08995 * 110.72679 * 324.75492 * 11 9 7 29 29 H 1.08998 * 109.88014 * 262.78000 * 12 11 9 30 30 H 1.08994 * 109.88142 * 141.61116 * 12 11 9 31 31 H 1.09002 * 117.53067 * 145.22615 * 18 16 14 32 32 H 1.08999 * 117.52690 * 0.02562 * 18 16 14 33 33 H 1.08995 * 110.56796 * 78.37680 * 20 19 18 34 34 H 1.09006 * 110.55898 * 315.67908 * 20 19 18 35 35 H 1.09003 * 109.88428 * 116.60674 * 21 20 19 36 36 H 1.08999 * 109.87882 * 237.60432 * 21 20 19 37 37 H 1.09004 * 110.64654 * 79.84555 * 23 22 21 38 38 H 1.09007 * 110.64438 * 202.90694 * 23 22 21 39 39 H 1.09002 * 110.36318 * 94.48460 * 24 13 12 40 40 H 1.09003 * 110.36301 * 216.80069 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6034 1.9848 -1.3946 5 1 1.3971 2.6812 0.5906 6 1 3.4891 1.4734 0.8042 7 6 2.0045 -1.1940 -0.0005 8 1 1.4728 -2.1247 0.1316 9 6 3.5002 -1.2005 -0.1856 10 8 3.9154 -0.1144 -1.0162 11 6 3.9834 -2.5576 -0.7618 12 6 5.4381 -2.6501 -0.2548 13 7 5.5471 -1.7737 0.9206 14 6 6.6660 -1.5622 1.6417 15 8 6.6398 -0.8151 2.5966 16 6 7.9495 -2.2540 1.2611 17 1 7.9000 -3.3416 1.2084 18 6 9.2630 -1.6272 1.7414 19 6 8.8645 -1.5450 0.2793 20 6 9.6259 -2.2957 -0.8245 21 6 9.1795 -1.5958 -2.1259 22 8 8.2058 -0.6006 -1.7645 23 6 8.4742 -0.2160 -0.3965 24 6 4.2283 -1.1694 1.1837 25 1 -0.4851 0.8400 0.0004 26 1 3.5386 -0.1337 -1.9066 27 1 3.9549 -2.5461 -1.8514 28 1 3.3847 -3.3789 -0.3680 29 1 6.1238 -2.3142 -1.0326 30 1 5.6679 -3.6777 0.0265 31 1 10.0771 -2.3026 2.0045 32 1 9.1987 -0.7141 2.3332 33 1 9.3411 -3.3477 -0.8385 34 1 10.7021 -2.1933 -0.6846 35 1 10.0360 -1.1198 -2.6034 36 1 8.7344 -2.3236 -2.8043 37 1 9.3010 0.4929 -0.3518 38 1 7.5813 0.2038 0.0669 39 1 3.6815 -1.7582 1.9203 40 1 4.3439 -0.1418 1.5283 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327170219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:56 Heat of formation + Delta-G solvation = -120.312260 kcal Electronic energy + Delta-G solvation = -23590.737649 eV Core-core repulsion = 20177.446125 eV Total energy + Delta-G solvation = -3413.291524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.70591 -40.34293 -39.13556 -36.80359 -36.37600 -34.49481 -31.97099 -31.29381 -30.17510 -28.60676 -27.43571 -25.06386 -23.56289 -23.46588 -21.58665 -20.99275 -19.89088 -19.44927 -18.26485 -17.62153 -17.26010 -16.85340 -16.56409 -16.42114 -16.29125 -15.99027 -15.55221 -14.87618 -14.57907 -14.26109 -14.23434 -13.99763 -13.82606 -13.56181 -13.27255 -13.19069 -13.11044 -12.59447 -12.43237 -12.38924 -12.16821 -12.00219 -11.95684 -11.48806 -11.31403 -11.20199 -10.78223 -10.69037 -10.60485 -10.34628 -9.61644 -8.41499 -6.52003 1.38543 1.43539 1.46726 1.64729 1.95131 2.35919 2.58969 2.91381 2.97867 3.27128 3.38993 3.56938 3.74887 3.80972 3.85265 3.93022 4.23339 4.25190 4.31760 4.45549 4.48770 4.50230 4.56567 4.65596 4.70744 4.82163 4.84304 4.89397 4.92155 4.99779 5.08667 5.15766 5.17959 5.23647 5.31246 5.51162 5.90940 6.01640 6.54680 6.59894 6.95681 7.10240 7.26753 8.71235 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.005858 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.933682 B = 4778.314174 C = 4969.198976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.035 3.965 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.334 1.334 6 H -0.289 1.289 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.215 3.785 10 O -0.564 6.564 11 C -0.138 4.138 12 C 0.112 3.888 13 N -0.606 5.606 14 C 0.542 3.458 15 O -0.599 6.599 16 C -0.170 4.170 17 H 0.158 0.842 18 C -0.114 4.114 19 C -0.135 4.135 20 C -0.105 4.105 21 C 0.037 3.963 22 O -0.397 6.397 23 C 0.079 3.921 24 C 0.115 3.885 25 H 0.268 0.732 26 H 0.384 0.616 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.393 -8.620 -4.705 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.166 4.166 3 Si 0.830 3.170 4 H -0.200 1.200 5 H -0.266 1.266 6 H -0.216 1.216 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.174 3.826 10 O -0.373 6.373 11 C -0.176 4.176 12 C -0.009 4.009 13 N -0.337 5.337 14 C 0.332 3.668 15 O -0.481 6.481 16 C -0.190 4.190 17 H 0.176 0.824 18 C -0.151 4.151 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.039 4.039 22 O -0.316 6.316 23 C 0.002 3.998 24 C -0.008 4.008 25 H 0.077 0.923 26 H 0.234 0.766 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.164 0.836 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 22.441 -7.927 -3.820 24.104 hybrid contribution -0.898 1.016 0.084 1.358 sum 21.543 -6.911 -3.736 22.931 Atomic orbital electron populations 1.70039 1.07986 1.28425 1.49955 1.25679 0.95197 1.02773 0.92929 0.84969 0.75810 0.77691 0.78539 1.19968 1.26605 1.21580 1.21445 0.91007 0.94075 1.51693 0.92418 1.20127 0.90911 0.84702 0.86826 1.86101 1.73603 1.49456 1.28173 1.23145 0.94342 0.98006 1.02093 1.22141 0.97945 0.94059 0.86798 1.48663 1.08894 1.45983 1.30209 1.20121 0.84487 0.80928 0.81255 1.90643 1.85996 1.40556 1.30870 1.22220 0.88311 1.01105 1.07389 0.82428 1.22940 0.95542 1.03042 0.93543 1.22231 1.01083 0.97250 0.93074 1.22414 1.01098 1.00449 0.90272 1.23471 0.92256 0.90684 0.97487 1.88975 1.55101 1.59375 1.28158 1.22863 0.99818 0.95128 0.81967 1.22595 0.82581 0.96952 0.98652 0.92293 0.76584 0.88597 0.90157 0.90305 0.89012 0.83605 0.89440 0.88030 0.87325 0.90977 0.88563 0.90052 0.93280 0.91186 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.45 0.30 -55.88 16 2 C 0.04 2.01 5.46 84.66 0.46 2.47 16 3 Si 0.99 51.00 24.71 68.60 1.69 52.69 16 4 H -0.27 -13.10 7.10 99.48 0.71 -12.40 16 5 H -0.33 -17.51 7.11 99.48 0.71 -16.80 16 6 H -0.29 -15.58 5.52 99.48 0.55 -15.03 16 7 C -0.54 -29.16 8.86 25.60 0.23 -28.93 16 8 H 0.06 3.33 7.99 -2.91 -0.02 3.31 16 9 C 0.21 9.52 0.69 -10.07 -0.01 9.52 16 10 O -0.56 -24.90 8.87 -148.98 -1.32 -26.22 16 11 C -0.14 -4.64 6.14 31.78 0.20 -4.44 16 12 C 0.11 3.28 6.48 86.73 0.56 3.84 16 13 N -0.61 -22.70 3.33 -811.36 -2.70 -25.40 16 14 C 0.54 19.75 6.26 87.65 0.55 20.30 16 15 O -0.60 -27.15 16.76 -3.01 -0.05 -27.20 16 16 C -0.17 -4.02 5.28 -11.85 -0.06 -4.08 16 17 H 0.16 2.72 8.14 -2.39 -0.02 2.70 16 18 C -0.11 -2.17 9.86 30.28 0.30 -1.88 16 19 C -0.14 -2.72 2.40 -52.38 -0.13 -2.85 16 20 C -0.11 -1.29 6.84 31.28 0.21 -1.07 16 21 C 0.04 0.60 7.72 72.45 0.56 1.16 16 22 O -0.40 -10.84 11.53 -148.98 -1.72 -12.56 16 23 C 0.08 2.12 7.38 72.36 0.53 2.65 16 24 C 0.12 5.28 5.88 86.93 0.51 5.79 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.38 14.67 8.83 -74.05 -0.65 14.02 16 27 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.08 2.68 7.98 -2.39 -0.02 2.66 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 2.10 7.86 -2.39 -0.02 2.09 16 33 H 0.10 0.89 8.13 -2.39 -0.02 0.87 16 34 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.05 1.76 7.01 -2.38 -0.02 1.74 16 39 H 0.07 3.25 8.04 -2.39 -0.02 3.23 16 40 H 0.04 2.03 6.39 -2.39 -0.02 2.02 16 Total: -1.00 -75.82 321.95 0.36 -75.46 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.23 Total: 16.63 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 3.92 Total: 2.48 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.40 Total: -81.29 kcal Atomic # 8 Polarization: -62.89 SS G_CDS: -3.09 Total: -65.98 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.69 Total: 52.69 kcal Total: -75.82 0.36 -75.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327170219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.852 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds