Wall clock time and date at job start Fri Apr 10 2020 15:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47114 * 270.00099 * 3 2 1 5 5 H 1.48504 * 109.47433 * 30.00198 * 3 2 1 6 6 H 1.48501 * 109.47216 * 149.99826 * 3 2 1 7 7 C 1.37871 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46897 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46816 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47255 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99532 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00226 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99888 * 179.97438 * 14 12 11 16 16 H 1.09003 * 110.67074 * 323.21591 * 15 14 12 17 17 C 1.54886 * 110.75438 * 86.45216 * 15 14 12 18 18 C 1.54272 * 104.19523 * 156.25442 * 17 15 14 19 19 H 1.08998 * 117.76243 * 196.02773 * 18 17 15 20 20 C 1.53002 * 118.19624 * 40.57183 * 18 17 15 21 21 C 1.53006 * 60.37585 * 266.38389 * 20 18 17 22 22 C 1.50706 * 119.29858 * 248.69339 * 21 20 18 23 23 O 1.20825 * 119.99859 * 70.22702 * 22 21 20 24 24 O 1.34224 * 120.00295 * 250.23661 * 22 21 20 25 25 C 1.54263 * 118.20009 * 94.55278 * 21 20 18 26 26 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47140 * 60.00184 * 9 7 2 28 28 H 1.09002 * 109.46837 * 299.99907 * 9 7 2 29 29 H 1.09001 * 109.47721 * 59.99728 * 10 9 7 30 30 H 1.09002 * 109.47089 * 299.99494 * 10 9 7 31 31 H 1.09001 * 109.47617 * 60.00043 * 11 10 9 32 32 H 1.08999 * 109.47610 * 299.99998 * 11 10 9 33 33 H 0.96998 * 119.99938 * 359.97438 * 14 12 11 34 34 H 1.09004 * 110.48524 * 37.58126 * 17 15 14 35 35 H 1.09000 * 110.60173 * 274.98714 * 17 15 14 36 36 H 1.08995 * 117.46385 * 158.78867 * 20 18 17 37 37 H 1.08998 * 117.44250 * 13.98166 * 20 18 17 38 38 H 0.96700 * 117.00196 * 179.97438 * 24 22 21 39 39 H 1.09008 * 110.48446 * 76.89898 * 25 21 20 40 40 H 1.09002 * 110.48781 * 199.53910 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4801 -4.9870 0.0001 12 6 2.4594 -6.1326 -0.0005 13 8 3.6518 -5.9109 -0.0019 14 7 2.0101 -7.4033 -0.0006 15 6 2.9621 -8.5168 -0.0018 16 1 3.8325 -8.2782 -0.6131 17 6 3.3881 -8.8763 1.4433 18 6 3.8439 -10.3470 1.3485 19 1 3.9394 -10.9098 2.2771 20 6 4.6611 -10.7733 0.1273 21 6 3.1410 -10.9466 0.1181 22 6 2.5568 -12.3356 0.1487 23 8 2.6401 -13.0040 1.1517 24 8 1.9442 -12.8301 -0.9384 25 6 2.2837 -9.8294 -0.5117 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 2.8719 -3.6043 0.8894 30 1 2.8718 -3.6043 -0.8906 31 1 0.8531 -5.0451 -0.8896 32 1 0.8537 -5.0446 0.8903 33 1 1.0564 -7.5805 0.0001 34 1 2.5425 -8.7821 2.1248 35 1 4.2122 -8.2417 1.7693 36 1 5.2691 -11.6734 0.2185 37 1 5.0808 -9.9843 -0.4967 38 1 1.5856 -13.7256 -0.8710 39 1 2.3208 -9.8874 -1.5996 40 1 1.2540 -9.8946 -0.1601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:43 Heat of formation + Delta-G solvation = -122.793229 kcal Electronic energy + Delta-G solvation = -21215.023605 eV Core-core repulsion = 17801.624498 eV Total energy + Delta-G solvation = -3413.399107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 7.77 seconds Orbital eigenvalues (eV) -41.33942 -39.84525 -38.75128 -36.51485 -34.60233 -34.12657 -32.05941 -30.24693 -29.19460 -27.69744 -25.10455 -24.03758 -22.77242 -20.94400 -20.33515 -19.81174 -19.64034 -18.29651 -17.49704 -16.90770 -16.22188 -16.04536 -15.81608 -15.23807 -14.72773 -14.41507 -14.27930 -14.03449 -13.60800 -13.33941 -13.26807 -12.56787 -12.26386 -12.06649 -11.98012 -11.91729 -11.79280 -11.52659 -11.31974 -11.05548 -10.80118 -10.65006 -10.60156 -10.52976 -10.15857 -9.71388 -9.67419 -9.26944 -9.07905 -9.01222 -8.31566 -5.97306 -3.98669 1.67263 2.49819 2.86750 3.06447 3.20504 3.35153 3.40985 3.45816 3.87064 4.03826 4.40330 4.49767 4.57657 4.72602 4.81780 4.92675 5.05243 5.18112 5.26941 5.32365 5.38837 5.42039 5.53227 5.68049 5.70975 5.71951 5.85356 5.88771 6.03592 6.26123 6.45470 6.72953 6.93405 7.16628 7.47390 7.55756 7.71517 7.84200 8.03487 8.42051 8.47543 9.08517 9.65327 11.14213 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050512 B = 0.002448 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.195987 B =11436.317323 C =11702.093527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.515 3.485 13 O -0.535 6.535 14 N -0.733 5.733 15 C 0.138 3.862 16 H 0.099 0.901 17 C -0.111 4.111 18 C -0.113 4.113 19 H 0.126 0.874 20 C -0.120 4.120 21 C -0.162 4.162 22 C 0.525 3.475 23 O -0.515 6.515 24 O -0.509 6.509 25 C -0.084 4.084 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.401 0.599 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.411 0.589 39 H 0.087 0.913 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -26.349 -0.927 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.303 3.697 13 O -0.411 6.411 14 N -0.386 5.386 15 C 0.032 3.968 16 H 0.117 0.883 17 C -0.149 4.149 18 C -0.132 4.132 19 H 0.144 0.856 20 C -0.157 4.157 21 C -0.164 4.164 22 C 0.368 3.632 23 O -0.403 6.403 24 O -0.321 6.321 25 C -0.122 4.122 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.235 0.765 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.105 0.895 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.952 -25.823 -0.684 26.133 hybrid contribution -0.453 0.006 0.050 0.456 sum 3.499 -25.818 -0.634 26.062 Atomic orbital electron populations 1.69966 1.06036 1.26531 1.51240 1.25022 0.94861 0.99260 0.95406 0.86592 0.79898 0.83421 0.78101 1.20677 1.21272 1.19839 1.21275 0.93190 0.91024 1.50101 0.92579 1.19134 0.93977 0.91481 0.97114 1.21443 0.98626 0.91530 1.01681 1.21857 0.98155 0.94066 1.03803 1.21300 0.90439 0.83642 0.74323 1.90677 1.17315 1.84655 1.48442 1.46059 1.09736 1.05461 1.77324 1.22090 0.93213 0.85188 0.96279 0.88300 1.22419 1.02132 0.92774 0.97614 1.23400 1.00372 0.96385 0.93000 0.85582 1.23159 0.88687 1.03776 1.00052 1.21585 0.96146 0.90266 1.08373 1.21963 0.74057 0.87299 0.79897 1.90731 1.55724 1.60331 1.33491 1.84528 1.68764 1.37604 1.41161 1.22281 0.98239 0.90419 1.01265 0.93076 0.96615 0.96617 0.92708 0.92706 0.89318 0.89323 0.76509 0.89921 0.89584 0.87335 0.86862 0.73015 0.89464 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.01 4.44 -26.73 -0.12 -2.13 16 11 C -0.14 -2.20 5.70 -27.88 -0.16 -2.36 16 12 C 0.51 7.73 7.83 -10.98 -0.09 7.65 16 13 O -0.54 -10.11 15.71 5.55 0.09 -10.03 16 14 N -0.73 -7.75 5.21 -51.13 -0.27 -8.01 16 15 C 0.14 1.31 2.70 -65.16 -0.18 1.13 16 16 H 0.10 1.08 6.95 -51.93 -0.36 0.71 16 17 C -0.11 -1.02 6.47 -25.07 -0.16 -1.18 16 18 C -0.11 -0.92 6.67 -89.50 -0.60 -1.52 16 19 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.12 -0.85 9.61 -26.73 -0.26 -1.11 16 21 C -0.16 -1.30 2.84 -154.54 -0.44 -1.74 16 22 C 0.53 4.65 7.95 36.01 0.29 4.93 16 23 O -0.51 -6.02 17.54 -18.75 -0.33 -6.35 16 24 O -0.51 -3.28 13.35 -39.24 -0.52 -3.81 16 25 C -0.08 -0.63 6.16 -24.29 -0.15 -0.78 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.40 3.15 8.56 -40.82 -0.35 2.80 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.75 7.21 -51.93 -0.37 0.38 16 38 H 0.41 0.90 9.10 45.56 0.41 1.31 16 39 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -35.53 341.28 -7.86 -43.38 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.28 Total: -0.50 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.41 Total: -10.47 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.47 Total: -34.34 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.77 Total: -20.18 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.53 -7.86 -43.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.410 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.77 seconds