Wall clock time and date at job start Fri Apr 10 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00248 * 2 1 4 4 H 1.48503 * 109.47188 * 270.00239 * 3 2 1 5 5 H 1.48507 * 109.47055 * 30.00118 * 3 2 1 6 6 H 1.48501 * 109.47519 * 149.99807 * 3 2 1 7 7 C 1.37879 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47272 * 184.66550 * 9 7 2 11 11 C 1.46904 * 111.00097 * 71.28018 * 10 9 7 12 12 C 1.52998 * 109.46982 * 190.00239 * 11 10 9 13 13 C 1.52994 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47438 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47483 * 180.02562 * 14 13 12 16 16 O 1.20834 * 120.00113 * 359.97438 * 15 14 13 17 17 O 1.34230 * 120.00277 * 179.97438 * 15 14 13 18 18 C 1.46898 * 111.00163 * 195.23574 * 10 9 7 19 19 C 1.50705 * 109.46857 * 75.57537 * 18 10 9 20 20 C 1.34513 * 125.78802 * 90.00306 * 19 18 10 21 21 C 1.41385 * 106.83918 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.83866 * 0.02562 * 21 20 19 23 23 O 1.34298 * 108.42387 * 359.73144 * 22 21 20 24 24 H 0.96991 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47275 * 64.65718 * 9 7 2 26 26 H 1.09000 * 109.46871 * 304.66185 * 9 7 2 27 27 H 1.09000 * 109.46778 * 310.00052 * 11 10 9 28 28 H 1.08993 * 109.46965 * 70.00038 * 11 10 9 29 29 H 1.08993 * 109.47187 * 300.00210 * 12 11 10 30 30 H 1.09005 * 109.47045 * 60.00096 * 12 11 10 31 31 H 1.09001 * 109.47562 * 300.00173 * 13 12 11 32 32 H 1.09005 * 109.47547 * 59.99830 * 13 12 11 33 33 H 1.09006 * 109.47099 * 300.00226 * 14 13 12 34 34 H 1.09003 * 109.47549 * 59.99895 * 14 13 12 35 35 H 0.96705 * 117.00420 * 179.97438 * 17 15 14 36 36 H 1.08997 * 109.47017 * 315.57469 * 18 10 9 37 37 H 1.08998 * 109.47140 * 195.57625 * 18 10 9 38 38 H 1.07997 * 126.57998 * 0.02978 * 20 19 18 39 39 H 1.07997 * 126.57946 * 179.97438 * 21 20 19 40 40 H 1.08000 * 125.78506 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2016 -3.6134 0.1138 11 6 2.7844 -3.6734 1.4610 12 6 3.9409 -4.6751 1.4722 13 6 4.5474 -4.7381 2.8753 14 6 5.7043 -5.7393 2.8865 15 6 6.3013 -5.8018 4.2687 16 8 5.8484 -5.1155 5.1541 17 8 7.3363 -6.6198 4.5164 18 6 1.5633 -4.8881 -0.2409 19 6 1.4093 -4.9733 -1.7376 20 6 2.3104 -5.4888 -2.5930 21 6 1.7604 -5.3668 -3.8898 22 6 0.5565 -4.7837 -3.7492 23 8 0.3466 -4.5527 -2.4430 24 1 -0.4849 0.8400 0.0004 25 1 0.6888 -2.5941 -0.9284 26 1 0.5629 -2.5214 0.8456 27 1 3.1552 -2.6873 1.7406 28 1 2.0223 -3.9903 2.1727 29 1 3.5701 -5.6612 1.1924 30 1 4.7031 -4.3581 0.7603 31 1 4.9181 -3.7521 3.1556 32 1 3.7851 -5.0553 3.5869 33 1 5.3340 -6.7255 2.6061 34 1 6.4666 -5.4217 2.1750 35 1 7.6857 -6.6252 5.4181 36 1 0.5817 -4.9461 0.2294 37 1 2.1828 -5.7142 0.1083 38 1 3.2694 -5.9149 -2.3381 39 1 2.2194 -5.6808 -4.8156 40 1 -0.1277 -4.5462 -4.5505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:34 Heat of formation + Delta-G solvation = -86.377020 kcal Electronic energy + Delta-G solvation = -21633.900208 eV Core-core repulsion = 18222.080226 eV Total energy + Delta-G solvation = -3411.819982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02292 -40.36908 -37.35704 -36.34966 -34.46373 -32.69624 -32.37044 -30.46023 -29.26128 -26.88485 -25.17383 -23.77396 -21.80466 -21.22305 -20.60137 -20.55874 -19.56209 -18.18146 -16.95543 -16.55891 -16.42476 -16.35510 -15.57820 -15.10612 -14.69492 -14.35029 -14.15228 -13.78326 -13.41968 -12.99308 -12.50826 -12.35782 -12.30959 -12.17433 -11.96084 -11.79449 -11.68026 -11.38628 -11.14568 -11.02608 -10.88963 -10.72366 -10.64671 -10.34938 -10.13388 -9.81714 -9.44694 -9.19835 -8.40111 -7.98337 -7.33471 -5.99356 -4.00680 2.07026 2.24192 2.89825 3.08206 3.34199 3.40011 3.43570 3.53299 4.44842 4.68678 4.86896 4.90491 5.14200 5.25731 5.34608 5.36985 5.43407 5.46678 5.48041 5.66177 5.79188 5.82533 5.89660 6.04325 6.10184 6.23579 6.29226 6.36514 6.37747 6.57076 6.60538 6.73401 6.97042 7.26861 7.33450 7.67427 7.73152 7.81888 8.09500 8.15696 8.51802 9.06918 9.63146 11.11304 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.004925 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.197539 B = 5683.724676 C = 7966.970228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.190 3.810 10 N -0.532 5.532 11 C 0.065 3.935 12 C -0.117 4.117 13 C -0.109 4.109 14 C -0.112 4.112 15 C 0.475 3.525 16 O -0.514 6.514 17 O -0.522 6.522 18 C 0.124 3.876 19 C 0.024 3.976 20 C -0.211 4.211 21 C -0.219 4.219 22 C -0.049 4.049 23 O -0.170 6.170 24 H 0.261 0.739 25 H 0.033 0.967 26 H -0.003 1.003 27 H 0.089 0.911 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.407 0.593 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -14.840 1.339 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.256 5.256 11 C -0.063 4.063 12 C -0.155 4.155 13 C -0.148 4.148 14 C -0.149 4.149 15 C 0.318 3.682 16 O -0.402 6.402 17 O -0.334 6.334 18 C -0.004 4.004 19 C -0.028 4.028 20 C -0.231 4.231 21 C -0.238 4.238 22 C -0.118 4.118 23 O -0.065 6.065 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.014 0.986 27 H 0.107 0.893 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.557 -14.287 0.991 16.683 hybrid contribution 0.142 0.802 0.847 1.175 sum 8.699 -13.485 1.838 16.152 Atomic orbital electron populations 1.69965 1.06041 1.26693 1.51056 1.24981 0.94833 0.99236 0.95513 0.86527 0.79742 0.83221 0.78089 1.20697 1.21349 1.19830 1.21124 0.93497 0.89780 1.49931 0.91849 1.19818 0.89807 0.87227 0.96582 1.62127 1.36133 1.01992 1.25397 1.21963 0.94800 1.00247 0.89286 1.21675 0.98917 0.99543 0.95364 1.21440 0.95951 0.98968 0.98394 1.21452 0.99650 1.03451 0.90373 1.23785 0.76775 0.75546 0.92094 1.90745 1.60265 1.41561 1.47635 1.84558 1.47820 1.62123 1.38923 1.20553 0.98684 0.95299 0.85867 1.22419 0.86430 0.99136 0.94766 1.21379 1.01041 1.08509 0.92161 1.21706 0.96685 1.06898 0.98508 1.23879 0.99659 1.04361 0.83865 1.84088 1.40124 1.64228 1.18051 0.92978 0.94938 0.98556 0.89262 0.95886 0.92363 0.90874 0.90687 0.91180 0.87743 0.87497 0.73443 0.93991 0.88876 0.84065 0.84166 0.78860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -14.22 8.37 -34.44 -0.29 -14.51 16 8 H 0.06 1.77 7.68 -52.49 -0.40 1.37 16 9 C 0.19 4.97 4.55 -4.97 -0.02 4.95 16 10 N -0.53 -11.05 4.38 -237.52 -1.04 -12.09 16 11 C 0.06 1.16 4.81 -3.82 -0.02 1.15 16 12 C -0.12 -1.54 5.19 -26.73 -0.14 -1.68 16 13 C -0.11 -1.29 4.50 -26.74 -0.12 -1.41 16 14 C -0.11 -1.01 5.81 -27.89 -0.16 -1.18 16 15 C 0.48 5.03 8.33 36.00 0.30 5.33 16 16 O -0.51 -7.34 16.74 -18.76 -0.31 -7.65 16 17 O -0.52 -4.18 13.42 -39.26 -0.53 -4.71 16 18 C 0.12 2.20 5.38 -4.97 -0.03 2.17 16 19 C 0.02 0.44 6.23 -35.62 -0.22 0.22 16 20 C -0.21 -3.46 10.81 -39.70 -0.43 -3.89 16 21 C -0.22 -3.31 10.91 -39.70 -0.43 -3.75 16 22 C -0.05 -0.78 12.09 29.42 0.36 -0.43 16 23 O -0.17 -3.33 9.99 5.72 0.06 -3.27 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.93 6.81 -51.93 -0.35 0.58 16 26 H 0.00 -0.10 8.06 -51.93 -0.42 -0.51 16 27 H 0.09 1.80 7.15 -51.93 -0.37 1.43 16 28 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.06 0.67 6.25 -51.93 -0.32 0.35 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.41 1.64 9.10 45.56 0.41 2.05 16 36 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 37 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 38 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 39 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -34.49 341.27 -7.38 -41.87 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.11 Total: 1.63 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.30 Total: -11.54 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.30 Total: -38.36 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.78 Total: -15.63 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.49 -7.38 -41.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.506 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds