Wall clock time and date at job start Fri Apr 10 2020 15:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48498 * 109.47070 * 270.00211 * 3 2 1 5 5 H 1.48504 * 109.46932 * 30.00156 * 3 2 1 6 6 H 1.48497 * 109.47250 * 150.00125 * 3 2 1 7 7 C 1.37882 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 11 16 16 H 1.09003 * 110.43551 * 325.98035 * 15 14 12 17 17 C 1.54888 * 110.48735 * 88.51920 * 15 14 12 18 18 C 1.55031 * 102.68302 * 156.51601 * 17 15 14 19 19 H 1.08995 * 110.36610 * 80.90662 * 18 17 15 20 20 C 1.50706 * 110.63705 * 203.43543 * 18 17 15 21 21 O 1.20822 * 120.00233 * 114.96618 * 20 18 17 22 22 O 1.34229 * 119.99702 * 294.96896 * 20 18 17 23 23 C 1.54262 * 104.28394 * 322.23484 * 18 17 15 24 24 H 1.08996 * 117.41594 * 243.53949 * 23 18 17 25 25 C 1.55471 * 118.30440 * 87.10323 * 23 18 17 26 26 C 1.53003 * 59.83921 * 266.70971 * 25 23 18 27 27 H 1.09004 * 119.29604 * 248.29055 * 26 25 23 28 28 H 0.97004 * 119.99534 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47079 * 59.99497 * 9 7 2 30 30 H 1.09001 * 109.46874 * 299.99485 * 9 7 2 31 31 H 1.09000 * 109.47250 * 59.99058 * 10 9 7 32 32 H 1.09007 * 109.46897 * 299.99936 * 10 9 7 33 33 H 1.09003 * 109.46690 * 59.99829 * 11 10 9 34 34 H 1.08993 * 109.46773 * 300.00165 * 11 10 9 35 35 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 36 36 H 1.08989 * 110.75729 * 274.93300 * 17 15 14 37 37 H 1.08995 * 110.75363 * 38.31064 * 17 15 14 38 38 H 0.96703 * 117.00094 * 180.02562 * 22 20 18 39 39 H 1.08993 * 117.18589 * 159.18414 * 25 23 18 40 40 H 1.09007 * 118.05576 * 13.84224 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4594 -6.1326 0.0031 13 8 3.6518 -5.9110 0.0035 14 7 2.0100 -7.4032 0.0043 15 6 2.9620 -8.5167 -0.0012 16 1 3.8500 -8.2554 -0.5767 17 6 3.3497 -8.9056 1.4471 18 6 3.8095 -10.3780 1.2927 19 1 4.8357 -10.4186 0.9276 20 6 3.6877 -11.1127 2.6029 21 8 2.9062 -12.0276 2.7122 22 8 4.4476 -10.7506 3.6485 23 6 2.8412 -10.9717 0.2489 24 1 2.1869 -11.7804 0.5742 25 6 3.1988 -10.8231 -1.2568 26 6 2.3023 -9.7883 -0.5738 27 1 1.2509 -9.7252 -0.8545 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8712 -3.6040 0.8922 32 1 2.8725 -3.6048 -0.8878 33 1 0.8538 -5.0454 -0.8878 34 1 0.8531 -5.0441 0.8922 35 1 1.0563 -7.5805 0.0043 36 1 4.1652 -8.2801 1.8098 37 1 2.4864 -8.8391 2.1091 38 1 4.3344 -11.2515 4.4679 39 1 2.7262 -11.5171 -1.9518 40 1 4.2127 -10.5173 -1.5152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:54 Heat of formation + Delta-G solvation = -123.174164 kcal Electronic energy + Delta-G solvation = -21276.744741 eV Core-core repulsion = 17863.329116 eV Total energy + Delta-G solvation = -3413.415626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -41.15202 -39.84865 -38.66025 -36.45851 -34.34379 -34.05834 -32.13740 -31.87872 -28.87466 -27.22017 -24.13802 -23.26523 -23.08717 -20.98964 -20.58553 -20.02193 -19.55480 -18.44166 -17.58159 -16.83406 -16.24171 -16.11085 -15.60154 -15.35711 -14.88723 -14.51870 -14.39843 -13.75380 -13.55431 -13.37413 -13.24554 -12.54815 -12.26214 -12.11222 -11.90536 -11.86165 -11.72964 -11.34192 -11.26935 -10.87433 -10.79973 -10.70398 -10.59647 -10.52778 -10.13867 -9.70535 -9.66993 -9.26461 -9.07933 -9.00961 -8.31370 -5.97096 -3.98423 1.81346 2.59593 2.87894 3.11793 3.19385 3.35311 3.41114 3.46005 3.89474 4.28674 4.47692 4.50892 4.60267 4.74807 4.77073 4.96006 4.99549 5.10669 5.17140 5.28802 5.38718 5.39071 5.65589 5.70148 5.71493 5.75210 5.78487 5.87064 6.12767 6.26766 6.47074 6.73386 6.93840 7.17041 7.51876 7.57206 7.71867 7.84574 8.03752 8.42522 8.47880 9.08786 9.65537 11.14452 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.002647 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.429060 B =10577.178891 C =10951.382609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.514 3.486 13 O -0.536 6.536 14 N -0.732 5.732 15 C 0.170 3.830 16 H 0.099 0.901 17 C -0.119 4.119 18 C -0.058 4.058 19 H 0.117 0.883 20 C 0.492 3.508 21 O -0.515 6.515 22 O -0.513 6.513 23 C -0.158 4.158 24 H 0.132 0.868 25 C -0.140 4.140 26 C -0.169 4.169 27 H 0.120 0.880 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.106 0.894 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 -25.363 1.780 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.303 3.697 13 O -0.412 6.412 14 N -0.384 5.384 15 C 0.065 3.935 16 H 0.117 0.883 17 C -0.158 4.158 18 C -0.078 4.078 19 H 0.134 0.866 20 C 0.334 3.666 21 O -0.403 6.403 22 O -0.324 6.324 23 C -0.176 4.176 24 H 0.149 0.851 25 C -0.177 4.177 26 C -0.187 4.187 27 H 0.138 0.862 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.270 0.730 39 H 0.125 0.875 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.195 -25.070 1.460 25.644 hybrid contribution -0.253 0.397 0.610 0.771 sum 4.942 -24.673 2.070 25.248 Atomic orbital electron populations 1.69964 1.06045 1.26530 1.51233 1.25023 0.94856 0.99257 0.95399 0.86592 0.79905 0.83419 0.78100 1.20679 1.21272 1.19826 1.21278 0.93196 0.91027 1.50114 0.92572 1.19131 0.93975 0.91477 0.97112 1.21445 0.98630 0.91529 1.01687 1.21852 0.98152 0.94062 1.03802 1.21307 0.90443 0.83675 0.74303 1.90676 1.17307 1.84660 1.48524 1.46079 1.09774 1.05392 1.77202 1.21255 0.93144 0.84496 0.94651 0.88262 1.23093 1.02599 0.91925 0.98180 1.21345 1.02356 0.95350 0.88703 0.86562 1.23167 0.76518 0.81182 0.85698 1.90703 1.36289 1.29447 1.83860 1.84561 1.62167 1.61954 1.23756 1.23543 1.01996 1.01664 0.90414 0.85057 1.23491 1.00798 1.00476 0.92985 1.23510 1.00403 0.90369 1.04436 0.86221 0.93075 0.96618 0.96621 0.92705 0.92697 0.89311 0.89332 0.76462 0.89068 0.90253 0.73044 0.87536 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.03 4.44 -26.73 -0.12 -2.14 16 11 C -0.14 -2.23 5.70 -27.88 -0.16 -2.39 16 12 C 0.51 7.85 7.83 -10.99 -0.09 7.76 16 13 O -0.54 -10.23 15.66 5.55 0.09 -10.14 16 14 N -0.73 -7.98 5.17 -52.20 -0.27 -8.25 16 15 C 0.17 1.66 2.98 -66.27 -0.20 1.47 16 16 H 0.10 1.12 7.60 -51.93 -0.39 0.73 16 17 C -0.12 -1.12 6.01 -24.66 -0.15 -1.26 16 18 C -0.06 -0.47 3.17 -90.04 -0.29 -0.75 16 19 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 20 C 0.49 4.46 7.63 36.01 0.27 4.73 16 21 O -0.51 -6.00 16.27 -18.75 -0.31 -6.30 16 22 O -0.51 -3.72 13.42 -39.25 -0.53 -4.25 16 23 C -0.16 -1.21 6.30 -88.19 -0.56 -1.77 16 24 H 0.13 1.13 7.06 -51.93 -0.37 0.77 16 25 C -0.14 -0.90 10.21 -25.42 -0.26 -1.16 16 26 C -0.17 -1.28 6.44 -89.50 -0.58 -1.85 16 27 H 0.12 0.80 8.03 -51.93 -0.42 0.38 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.40 3.32 8.55 -40.82 -0.35 2.97 16 36 H 0.09 0.96 8.14 -51.94 -0.42 0.53 16 37 H 0.08 0.76 8.05 -51.93 -0.42 0.35 16 38 H 0.41 1.26 9.10 45.56 0.41 1.68 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -35.43 340.71 -8.12 -43.55 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.30 Total: 0.41 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.66 Total: -10.77 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.47 Total: -34.64 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.75 Total: -20.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.43 -8.12 -43.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.621 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds