Wall clock time and date at job start Fri Apr 10 2020 14:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48499 * 109.47508 * 275.04251 * 3 2 1 5 5 H 1.48503 * 109.46780 * 35.04370 * 3 2 1 6 6 H 1.48498 * 109.47216 * 155.03961 * 3 2 1 7 7 C 1.37876 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00065 * 355.19587 * 7 2 1 9 9 C 1.50707 * 120.00219 * 175.19443 * 7 2 1 10 10 C 1.52998 * 115.54747 * 95.28475 * 9 7 2 11 11 N 1.46901 * 109.47380 * 40.79911 * 10 9 7 12 12 C 1.46264 * 110.99336 * 56.17581 * 11 10 9 13 13 C 1.53271 * 109.76390 * 161.95620 * 12 11 10 14 14 S 1.81872 * 108.44336 * 62.08553 * 13 12 11 15 15 C 1.81968 * 101.97629 * 308.64696 * 14 13 12 16 16 H 1.08993 * 110.43210 * 290.97263 * 15 14 13 17 17 C 1.53019 * 108.94873 * 170.41910 * 15 14 13 18 18 C 1.52948 * 109.61636 * 181.59484 * 17 15 14 19 19 C 1.53029 * 109.33217 * 60.21788 * 18 17 15 20 20 C 1.52939 * 109.34808 * 299.76079 * 19 18 17 21 21 C 1.46613 * 110.99771 * 290.02159 * 11 10 9 22 22 H 1.09001 * 109.46153 * 77.72257 * 21 11 10 23 23 C 1.52997 * 117.52023 * 240.98778 * 9 7 2 24 24 C 1.52997 * 117.49706 * 309.61750 * 9 7 2 25 25 H 0.97004 * 120.00267 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47086 * 280.79734 * 10 9 7 27 27 H 1.09002 * 109.46849 * 160.79794 * 10 9 7 28 28 H 1.08997 * 109.44536 * 41.85035 * 12 11 10 29 29 H 1.08998 * 109.39494 * 282.02562 * 12 11 10 30 30 H 1.09003 * 109.64257 * 302.40096 * 13 12 11 31 31 H 1.09003 * 109.81935 * 181.87606 * 13 12 11 32 32 H 1.08997 * 109.44615 * 61.55657 * 17 15 14 33 33 H 1.09001 * 109.44287 * 301.62605 * 17 15 14 34 34 H 1.09000 * 109.49352 * 180.17606 * 18 17 15 35 35 H 1.08996 * 109.49240 * 300.22992 * 18 17 15 36 36 H 1.08995 * 109.49027 * 59.72183 * 19 18 17 37 37 H 1.08997 * 109.49250 * 179.80226 * 19 18 17 38 38 H 1.09003 * 109.44087 * 180.25633 * 20 19 18 39 39 H 1.09004 * 109.44318 * 300.14337 * 20 19 18 40 40 H 1.09005 * 117.49673 * 214.97521 * 23 9 7 41 41 H 1.09000 * 117.49771 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.50254 * 359.97282 * 24 9 7 43 43 H 1.09002 * 117.49653 * 144.99912 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3901 2.1080 -1.3946 5 1 1.5038 2.6195 0.8040 6 1 3.5958 1.4118 0.5908 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1278 0.0774 9 6 3.5076 -1.1963 -0.1099 10 6 4.2656 -1.2673 1.2172 11 7 3.5928 -2.2154 2.1153 12 6 3.4697 -3.5320 1.4903 13 6 3.1930 -4.5912 2.5631 14 16 1.6099 -4.1963 3.3666 15 6 1.8402 -2.4481 3.8159 16 1 2.5850 -2.3532 4.6060 17 6 0.5036 -1.8781 4.2957 18 6 0.6708 -0.3973 4.6401 19 6 1.1269 0.3643 3.3936 20 6 2.4656 -0.2007 2.9162 21 6 2.3052 -1.6833 2.5718 22 1 1.5649 -1.7941 1.7794 23 6 4.1276 -1.9040 -1.3163 24 6 4.1349 -0.3760 -1.2388 25 1 -0.4851 0.8401 0.0004 26 1 4.2836 -0.2799 1.6787 27 1 5.2868 -1.6018 1.0349 28 1 4.3968 -3.7754 0.9713 29 1 2.6477 -3.5176 0.7748 30 1 3.9926 -4.5801 3.3039 31 1 3.1341 -5.5773 2.1024 32 1 0.1742 -2.4216 5.1812 33 1 -0.2407 -1.9852 3.5066 34 1 -0.2815 0.0058 4.9845 35 1 1.4174 -0.2889 5.4267 36 1 0.3826 0.2511 2.6055 37 1 1.2436 1.4207 3.6353 38 1 2.7941 0.3438 2.0309 39 1 3.2086 -0.0900 3.7061 40 1 5.0755 -2.4203 -1.1645 41 1 3.4483 -2.3686 -2.0311 42 1 3.4606 0.1649 -1.9027 43 1 5.0878 0.1130 -1.0360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:06 Heat of formation + Delta-G solvation = 36.306557 kcal Electronic energy + Delta-G solvation = -22607.428534 eV Core-core repulsion = 19779.514477 eV Total energy + Delta-G solvation = -2827.914057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.40205 -36.83896 -34.86988 -32.31293 -30.94986 -30.03015 -28.57336 -25.96675 -24.81576 -22.55040 -21.97968 -21.65676 -20.23736 -19.35443 -18.48345 -16.47976 -16.29049 -15.35749 -14.83406 -14.51922 -14.33203 -14.06432 -13.70102 -13.37674 -13.07850 -12.86256 -12.84054 -12.59059 -11.85693 -11.81831 -11.57450 -11.48308 -11.07969 -10.96878 -10.68475 -10.64266 -10.46307 -10.37848 -10.31627 -10.03052 -9.67635 -9.53581 -9.49334 -9.06523 -8.87322 -8.71196 -8.46944 -7.40073 -7.08446 -6.20007 -4.14189 2.33134 3.08371 3.19550 3.31166 3.33176 4.30996 4.53971 4.86229 5.12099 5.25290 5.31868 5.48519 5.50655 5.63697 5.71608 5.80532 5.80818 5.91165 5.96311 6.03458 6.08292 6.11580 6.15458 6.18445 6.21761 6.28754 6.42158 6.44028 6.52352 6.63762 6.65041 6.67473 6.72563 6.80915 6.96275 7.00577 7.06335 7.08913 7.52137 7.63910 7.87150 7.99455 8.37930 8.76884 9.40888 10.89252 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.010670 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.819474 B = 2623.551160 C = 3600.854722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.088 3.912 3 Si 0.872 3.128 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.485 4.485 8 H 0.084 0.916 9 C -0.027 4.027 10 C 0.085 3.915 11 N -0.535 5.535 12 C 0.059 3.941 13 C -0.070 4.070 14 S -0.295 6.295 15 C -0.026 4.026 16 H 0.078 0.922 17 C -0.097 4.097 18 C -0.107 4.107 19 C -0.127 4.127 20 C -0.108 4.108 21 C 0.075 3.925 22 H 0.134 0.866 23 C -0.181 4.181 24 C -0.204 4.204 25 H 0.265 0.735 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -2.462 6.087 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.702 3.298 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.522 4.522 8 H 0.102 0.898 9 C -0.030 4.030 10 C -0.043 4.043 11 N -0.258 5.258 12 C -0.071 4.071 13 C -0.219 4.219 14 S -0.066 6.066 15 C -0.155 4.155 16 H 0.096 0.904 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.165 4.165 20 C -0.147 4.147 21 C -0.034 4.034 22 H 0.151 0.849 23 C -0.219 4.219 24 C -0.242 4.242 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.374 -3.160 6.689 8.594 hybrid contribution 1.135 1.829 -1.010 2.378 sum 5.509 -1.331 5.679 8.023 Atomic orbital electron populations 1.69886 1.06008 1.27014 1.49221 1.24850 0.94422 0.98308 0.93974 0.87119 0.80867 0.84170 0.77693 1.21484 1.21963 1.18269 1.20109 0.86602 0.94424 1.51077 0.89814 1.20309 0.95868 0.99457 0.87335 1.21963 0.94849 0.95888 0.91603 1.61532 1.22980 1.02288 1.38958 1.22048 1.01970 0.88543 0.94506 1.23448 0.96225 1.01407 1.00774 1.86576 1.26227 1.16429 1.77335 1.23342 0.99989 0.91236 1.00932 0.90381 1.21332 0.95809 0.95445 1.01076 1.21470 1.00538 0.94651 0.97973 1.21626 0.98983 0.97759 0.98090 1.21716 0.96329 0.96000 1.00623 1.22431 0.93444 0.91886 0.95619 0.84876 1.22882 1.00800 0.93700 1.04492 1.22874 1.01272 0.93962 1.06061 0.92499 0.90817 0.93218 0.91331 0.91543 0.90265 0.88686 0.92208 0.90515 0.92230 0.92668 0.89528 0.93241 0.90307 0.93642 0.91255 0.89818 0.89770 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.96 13.56 55.43 0.75 -23.21 16 2 C 0.09 2.22 4.03 -17.82 -0.07 2.15 16 3 Si 0.87 20.41 21.96 -169.99 -3.73 16.67 16 4 H -0.29 -6.91 7.07 56.52 0.40 -6.51 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -5.73 5.37 56.52 0.30 -5.43 16 7 C -0.49 -11.82 4.96 -34.44 -0.17 -11.99 16 8 H 0.08 2.30 6.08 -52.48 -0.32 1.99 16 9 C -0.03 -0.58 0.24 -155.66 -0.04 -0.62 16 10 C 0.08 1.65 4.93 -3.82 -0.02 1.63 16 11 N -0.54 -10.08 4.48 -227.04 -1.02 -11.10 16 12 C 0.06 1.05 4.50 -4.03 -0.02 1.03 16 13 C -0.07 -1.11 6.69 37.30 0.25 -0.86 16 14 S -0.29 -5.24 21.72 -107.50 -2.34 -7.58 16 15 C -0.03 -0.46 2.67 -26.59 -0.07 -0.53 16 16 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 17 C -0.10 -1.64 5.17 -26.75 -0.14 -1.78 16 18 C -0.11 -1.69 5.93 -26.74 -0.16 -1.85 16 19 C -0.13 -2.35 5.87 -26.75 -0.16 -2.51 16 20 C -0.11 -2.10 3.42 -26.74 -0.09 -2.19 16 21 C 0.07 1.47 0.96 -67.71 -0.06 1.40 16 22 H 0.13 3.14 4.18 -51.93 -0.22 2.92 16 23 C -0.18 -3.50 9.74 -26.73 -0.26 -3.76 16 24 C -0.20 -4.17 7.29 -26.73 -0.19 -4.36 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.07 1.49 4.68 -51.93 -0.24 1.25 16 27 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 28 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 29 H 0.07 1.37 5.86 -51.93 -0.30 1.06 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.87 7.23 -51.93 -0.38 1.49 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.67 1.42 -51.93 -0.07 1.60 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.08 1.86 6.56 -51.93 -0.34 1.51 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 305.55 15.07 4.60 4.60 Total: -1.00 -25.03 305.55 -9.94 -34.97 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.00 Total: 9.87 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -1.20 Total: -24.23 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.27 Total: -34.31 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -3.73 Total: 16.67 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.34 Total: -7.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.03 -9.94 -34.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.279 kcal (2) G-P(sol) polarization free energy of solvation -25.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds