Wall clock time and date at job start Fri Apr 10 2020 14:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48494 * 109.47081 * 275.00261 * 3 2 1 5 5 H 1.48504 * 109.46935 * 35.00051 * 3 2 1 6 6 H 1.48499 * 109.47221 * 154.99939 * 3 2 1 7 7 C 1.37878 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00120 * 354.43102 * 7 2 1 9 9 C 1.50695 * 119.99862 * 174.43137 * 7 2 1 10 10 C 1.53001 * 115.54830 * 303.91580 * 9 7 2 11 11 N 1.46899 * 109.47549 * 280.25233 * 10 9 7 12 12 C 1.46417 * 110.99572 * 58.21256 * 11 10 9 13 13 C 1.53276 * 109.77581 * 161.82095 * 12 11 10 14 14 S 1.81898 * 108.41133 * 62.16171 * 13 12 11 15 15 C 1.81774 * 102.00642 * 308.78128 * 14 13 12 16 16 H 1.08995 * 109.62166 * 170.92439 * 15 14 13 17 17 C 1.52951 * 109.51626 * 291.23646 * 15 14 13 18 18 C 1.53054 * 109.31299 * 179.20176 * 17 15 14 19 19 C 1.52968 * 110.06358 * 301.16445 * 18 17 15 20 20 C 1.53011 * 109.63056 * 59.19802 * 19 18 17 21 21 C 1.46610 * 111.00045 * 292.10516 * 11 10 9 22 22 H 1.09000 * 109.60454 * 77.31686 * 21 11 10 23 23 C 1.53000 * 117.52169 * 89.61728 * 9 7 2 24 24 C 1.53001 * 117.50278 * 158.24992 * 9 7 2 25 25 H 0.97006 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.47139 * 160.25515 * 10 9 7 27 27 H 1.08998 * 109.47257 * 40.25586 * 10 9 7 28 28 H 1.08997 * 109.42295 * 281.91427 * 12 11 10 29 29 H 1.09004 * 109.42178 * 41.79349 * 12 11 10 30 30 H 1.08998 * 109.67896 * 181.88581 * 13 12 11 31 31 H 1.08996 * 109.68121 * 302.43344 * 13 12 11 32 32 H 1.08997 * 109.49941 * 299.70956 * 17 15 14 33 33 H 1.08995 * 109.49686 * 59.80977 * 17 15 14 34 34 H 1.08999 * 109.45225 * 180.83139 * 18 17 15 35 35 H 1.08997 * 108.96300 * 61.18170 * 18 17 15 36 36 H 1.09000 * 109.44149 * 299.14626 * 19 18 17 37 37 H 1.09002 * 109.41352 * 179.22946 * 19 18 17 38 38 H 1.09009 * 109.51244 * 179.86937 * 20 19 18 39 39 H 1.08994 * 109.55618 * 59.73937 * 20 19 18 40 40 H 1.08997 * 117.50023 * 214.96859 * 23 9 7 41 41 H 1.09000 * 117.49441 * 359.97438 * 23 9 7 42 42 H 1.09002 * 117.49575 * 359.97438 * 24 9 7 43 43 H 1.08995 * 117.50077 * 144.99153 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 1.4683 -2.1271 0.0917 9 6 3.5061 -1.1973 -0.1261 10 6 4.0658 -0.4854 -1.3594 11 7 3.9542 -1.3690 -2.5276 12 6 2.5621 -1.7590 -2.7593 13 6 2.4013 -2.2813 -4.1913 14 16 3.4411 -3.7614 -4.3832 15 6 5.0503 -3.1744 -3.7749 16 1 5.7366 -4.0163 -3.6841 17 6 5.6231 -2.1480 -4.7536 18 6 6.9683 -1.6422 -4.2270 19 6 6.7872 -1.0109 -2.8454 20 6 6.2101 -2.0469 -1.8785 21 6 4.8504 -2.5224 -2.4016 22 1 4.4184 -3.2476 -1.7120 23 6 4.3246 -1.1233 1.1644 24 6 4.2550 -2.4331 0.3767 25 1 -0.4850 0.8401 -0.0004 26 1 5.1136 -0.2365 -1.1910 27 1 3.4997 0.4284 -1.5396 28 1 2.2830 -2.5422 -2.0545 29 1 1.9145 -0.8941 -2.6151 30 1 1.3581 -2.5398 -4.3728 31 1 2.7187 -1.5156 -4.8991 32 1 5.7570 -2.6121 -5.7306 33 1 4.9364 -1.3061 -4.8412 34 1 7.3716 -0.8996 -4.9154 35 1 7.6588 -2.4825 -4.1543 36 1 6.1047 -0.1643 -2.9200 37 1 7.7529 -0.6670 -2.4749 38 1 6.0840 -1.5957 -0.8942 39 1 6.8895 -2.8961 -1.8055 40 1 5.2618 -0.5675 1.1349 41 1 3.7769 -1.0718 2.1054 42 1 3.6615 -3.2437 0.7996 43 1 5.1462 -2.7390 -0.1710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:15 Heat of formation + Delta-G solvation = 38.009932 kcal Electronic energy + Delta-G solvation = -22395.053709 eV Core-core repulsion = 19567.213516 eV Total energy + Delta-G solvation = -2827.840193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06090 -36.77745 -34.54105 -32.33413 -31.26669 -30.24974 -29.17253 -26.06977 -24.75914 -22.77468 -22.15104 -21.65844 -21.05399 -19.23517 -18.29667 -16.80956 -16.29501 -15.59208 -15.18733 -14.71176 -14.49340 -14.37789 -13.78806 -13.40572 -13.10560 -12.91082 -12.61317 -12.31918 -12.27179 -12.07554 -11.82708 -11.58402 -11.37893 -11.15949 -10.93369 -10.87993 -10.58001 -10.45731 -10.38515 -10.21574 -9.95754 -9.80550 -9.57319 -9.12634 -9.01969 -8.78112 -8.48535 -7.58911 -7.29871 -6.18325 -4.14915 2.17139 2.87905 3.20007 3.33336 3.38656 4.33988 4.36174 4.79670 4.85869 5.02642 5.10113 5.22774 5.33394 5.41747 5.50811 5.53813 5.61264 5.67564 5.73835 5.75722 5.86357 5.91830 5.94266 6.04891 6.10777 6.14883 6.21533 6.26993 6.37501 6.40298 6.43896 6.49321 6.55565 6.60606 6.72773 6.75714 6.94336 7.04282 7.11612 7.63061 7.68710 7.80396 8.43733 8.83954 9.44375 10.92947 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.008200 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.404205 B = 3413.717618 C = 3941.672127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.254 1.254 7 C -0.478 4.478 8 H 0.074 0.926 9 C -0.025 4.025 10 C 0.082 3.918 11 N -0.530 5.530 12 C 0.069 3.931 13 C -0.069 4.069 14 S -0.296 6.296 15 C -0.030 4.030 16 H 0.099 0.901 17 C -0.102 4.102 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.125 4.125 21 C 0.086 3.914 22 H 0.070 0.930 23 C -0.199 4.199 24 C -0.201 4.201 25 H 0.265 0.735 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.927 -2.539 -7.357 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.178 1.178 7 C -0.516 4.516 8 H 0.092 0.908 9 C -0.027 4.027 10 C -0.045 4.045 11 N -0.253 5.253 12 C -0.060 4.060 13 C -0.218 4.218 14 S -0.066 6.066 15 C -0.159 4.159 16 H 0.117 0.883 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.164 4.164 21 C -0.024 4.024 22 H 0.087 0.913 23 C -0.238 4.238 24 C -0.238 4.238 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.546 -3.230 -8.199 14.525 hybrid contribution 0.320 1.588 1.272 2.060 sum 11.866 -1.641 -6.927 13.837 Atomic orbital electron populations 1.69900 1.06288 1.27096 1.49728 1.24904 0.94488 0.98855 0.94228 0.86996 0.81292 0.83729 0.77951 1.20488 1.22278 1.17827 1.20278 0.86785 0.94339 1.50153 0.90767 1.20118 0.94788 0.96658 0.91136 1.22095 0.99259 0.95135 0.88036 1.61535 1.07312 1.17341 1.39150 1.22182 0.89211 1.02394 0.92206 1.23668 1.00435 0.95950 1.01749 1.86578 1.10037 1.24223 1.85801 1.23257 0.94480 1.00391 0.97803 0.88331 1.21695 0.97050 0.98690 0.96714 1.21472 0.96838 0.99679 0.96858 1.21500 1.00134 0.99106 0.94570 1.22004 0.95465 0.99137 0.99802 1.21943 0.93463 0.93221 0.93765 0.91268 1.23054 1.01308 1.00825 0.98589 1.23244 1.02608 0.92155 1.05769 0.92547 0.91684 0.91494 0.91399 0.88835 0.88211 0.90043 0.92099 0.90332 0.92314 0.92831 0.90524 0.92891 0.90028 0.92055 0.91601 0.89938 0.90342 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 2 C 0.08 2.08 5.27 -17.82 -0.09 1.99 16 3 Si 0.87 20.56 24.59 -169.99 -4.18 16.38 16 4 H -0.28 -6.44 6.94 56.52 0.39 -6.05 16 5 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.25 -5.72 6.25 56.52 0.35 -5.37 16 7 C -0.48 -12.30 6.75 -34.44 -0.23 -12.53 16 8 H 0.07 2.15 8.05 -52.49 -0.42 1.73 16 9 C -0.02 -0.53 0.46 -155.66 -0.07 -0.60 16 10 C 0.08 1.59 3.80 -3.82 -0.01 1.58 16 11 N -0.53 -9.31 3.03 -226.74 -0.69 -10.00 16 12 C 0.07 1.32 3.90 -3.94 -0.02 1.31 16 13 C -0.07 -1.14 6.35 37.30 0.24 -0.90 16 14 S -0.30 -4.71 21.79 -107.50 -2.34 -7.05 16 15 C -0.03 -0.43 2.70 -26.59 -0.07 -0.50 16 16 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.10 -1.32 5.02 -26.73 -0.13 -1.46 16 18 C -0.11 -1.25 5.90 -26.72 -0.16 -1.40 16 19 C -0.12 -1.46 5.38 -26.74 -0.14 -1.60 16 20 C -0.13 -1.72 3.70 -26.60 -0.10 -1.81 16 21 C 0.09 1.35 1.33 -67.57 -0.09 1.26 16 22 H 0.07 1.23 5.60 -51.93 -0.29 0.94 16 23 C -0.20 -4.01 8.76 -26.73 -0.23 -4.24 16 24 C -0.20 -3.85 7.65 -26.73 -0.20 -4.06 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.06 1.16 4.52 -51.92 -0.23 0.93 16 27 H 0.07 1.44 4.06 -51.93 -0.21 1.23 16 28 H 0.07 1.48 6.69 -51.93 -0.35 1.13 16 29 H 0.09 2.05 7.29 -51.93 -0.38 1.67 16 30 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.08 1.26 7.57 -51.93 -0.39 0.87 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.15 6.72 -51.93 -0.35 0.80 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.10 6.43 -51.93 -0.33 0.76 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.22 4.22 -51.92 -0.22 1.00 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.09 1.51 3.73 -51.93 -0.19 1.31 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -26.47 305.18 -9.95 -36.42 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.79 Total: 7.56 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.33 Total: -22.97 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.09 Total: -34.94 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.18 Total: 16.38 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -2.34 Total: -7.05 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.47 -9.95 -36.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.431 kcal (2) G-P(sol) polarization free energy of solvation -26.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds